Wall clock time and date at job start Sun Mar 29 2020 22:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47193 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47204 * 179.97438 * 333.67849 * 3 2 1 5 5 S 1.81001 * 109.47167 * 311.12901 * 4 3 2 6 6 C 1.76202 * 99.99784 * 180.02562 * 5 4 3 7 7 N 1.32388 * 126.26021 * 359.97438 * 6 5 4 8 8 N 1.28516 * 110.20609 * 180.02562 * 7 6 5 9 9 C 1.33098 * 109.74302 * 0.02562 * 8 7 6 10 10 C 1.39776 * 126.56257 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99778 * 186.09356 * 10 9 8 12 12 C 1.40085 * 120.00068 * 6.08606 * 10 9 8 13 13 N 1.30808 * 119.99942 * 184.12744 * 12 10 9 14 14 Si 1.86799 * 119.99669 * 4.13543 * 12 10 9 15 15 H 1.48509 * 109.46950 * 179.97438 * 14 12 10 16 16 H 1.48495 * 109.47355 * 299.99259 * 14 12 10 17 17 H 1.48501 * 109.47215 * 59.99928 * 14 12 10 18 18 N 1.36669 * 126.25987 * 180.30691 * 6 5 4 19 19 C 1.46505 * 127.15024 * 359.97438 * 18 6 5 20 20 H 1.09001 * 109.47459 * 255.18826 * 1 2 3 21 21 H 1.09002 * 109.47523 * 15.18660 * 1 2 3 22 22 H 1.09006 * 109.47290 * 135.19010 * 1 2 3 23 23 H 1.09003 * 109.46349 * 191.13096 * 4 3 2 24 24 H 1.08993 * 109.47219 * 71.13494 * 4 3 2 25 25 H 0.97000 * 120.00392 * 354.84969 * 13 12 10 26 26 H 1.08991 * 109.47295 * 270.14314 * 19 18 6 27 27 H 1.08996 * 109.46934 * 30.14387 * 19 18 6 28 28 H 1.09000 * 109.46691 * 150.13746 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4719 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1180 0.0006 0.0003 5 16 4.7211 -1.1218 1.2858 6 6 6.4591 -0.9304 1.0682 7 7 7.0559 -0.1531 0.1781 8 7 8.3326 -0.2498 0.2894 9 6 8.6355 -1.1025 1.2654 10 6 9.9183 -1.4680 1.6834 11 1 10.0443 -2.2455 2.4223 12 6 11.0403 -0.8259 1.1438 13 7 12.2424 -1.2221 1.4741 14 14 10.8197 0.5962 -0.0472 15 1 12.1517 1.0991 -0.4697 16 1 10.0649 0.1316 -1.2386 17 1 10.0676 1.6888 0.6204 18 7 7.4377 -1.5621 1.7832 19 6 7.2561 -2.5238 2.8734 20 1 -0.3634 -0.2627 0.9935 21 1 -0.3634 0.9918 -0.2692 22 1 -0.3634 -0.7291 -0.7243 23 1 4.4811 1.0090 0.1988 24 1 4.4815 -0.3317 -0.9720 25 1 12.3583 -1.9097 2.1484 26 1 7.2091 -1.9915 3.8233 27 1 6.3289 -3.0759 2.7200 28 1 8.0951 -3.2194 2.8877 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279826215.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:16 Heat of formation + Delta-G solvation = 77.567611 kcal Electronic energy + Delta-G solvation = -13673.761124 eV Core-core repulsion = 11238.020272 eV Total energy + Delta-G solvation = -2435.740852 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.87961 -35.96662 -35.70236 -35.37066 -32.12772 -31.58418 -28.49922 -27.63623 -26.95180 -23.37849 -22.20037 -20.21402 -18.80129 -17.30411 -17.02020 -16.91459 -16.12305 -15.72200 -15.54401 -15.20525 -14.72855 -14.42508 -14.24316 -14.14855 -14.09162 -13.57047 -13.13136 -12.89492 -12.20099 -11.89888 -11.58279 -11.44234 -11.05513 -10.80136 -10.76568 -10.55915 -10.37957 -9.50298 -8.77174 -6.88501 0.02545 0.92660 0.95562 1.53730 1.58051 1.62920 1.91206 1.98740 2.10389 2.21120 2.41269 3.02841 3.11255 3.91489 4.12973 4.32255 4.40963 4.44416 4.53879 4.62539 4.70577 4.85853 4.86183 5.08318 5.20359 5.35758 5.65032 5.98984 6.37069 6.53150 6.54486 7.91094 8.11453 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.048237 B = 0.005828 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.332821 B = 4803.148321 C = 5351.787655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.136 4.136 3 C -0.229 4.229 4 C 0.024 3.976 5 S 0.018 5.982 6 C 0.077 3.923 7 N -0.308 5.308 8 N -0.447 5.447 9 C 0.325 3.675 10 C -0.506 4.506 11 H 0.085 0.915 12 C 0.042 3.958 13 N -0.820 5.820 14 Si 1.145 2.855 15 H -0.296 1.296 16 H -0.277 1.277 17 H -0.294 1.294 18 N -0.514 5.514 19 C 0.092 3.908 20 H 0.101 0.899 21 H 0.101 0.899 22 H 0.100 0.900 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.287 0.713 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.541 -1.132 1.498 18.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.141 4.141 3 C -0.231 4.231 4 C -0.123 4.123 5 S 0.247 5.753 6 C -0.298 4.298 7 N -0.151 5.151 8 N -0.296 5.296 9 C 0.079 3.921 10 C -0.547 4.547 11 H 0.103 0.897 12 C -0.178 4.178 13 N -0.445 5.445 14 Si 0.973 3.027 15 H -0.225 1.225 16 H -0.204 1.204 17 H -0.222 1.222 18 N -0.214 5.214 19 C -0.050 4.050 20 H 0.119 0.881 21 H 0.120 0.880 22 H 0.118 0.882 23 H 0.126 0.874 24 H 0.126 0.874 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.060 0.129 0.246 18.062 hybrid contribution 0.399 -1.476 1.381 2.061 sum -17.661 -1.347 1.627 17.787 Atomic orbital electron populations 1.19254 0.80894 1.04957 1.04925 1.23375 0.94796 0.98116 0.97787 1.21080 0.92254 1.04804 1.04956 1.19962 0.88574 1.02665 1.01132 1.84667 0.85992 1.58098 1.46585 1.26480 0.97668 1.04567 1.01125 1.74185 1.01344 1.19734 1.19820 1.73871 1.05565 1.27143 1.22977 1.21820 0.87914 0.91753 0.90643 1.19406 0.88157 1.21586 1.25579 0.89691 1.27759 0.90560 1.01013 0.98504 1.70664 1.23461 1.25544 1.24869 0.82220 0.72051 0.72550 0.75833 1.22519 1.20406 1.22208 1.46186 1.04289 1.38935 1.31986 1.21927 1.04146 0.91296 0.87659 0.88078 0.88032 0.88165 0.87391 0.87403 0.90205 0.90207 0.88334 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.49 10.32 70.17 0.72 0.24 15 2 C -0.14 -2.99 14.13 31.12 0.44 -2.55 15 3 C -0.23 -6.25 13.34 31.13 0.42 -5.84 15 4 C 0.02 0.75 5.71 70.18 0.40 1.15 15 5 S 0.02 0.59 21.75 -56.49 -1.23 -0.63 15 6 C 0.08 3.44 8.09 179.18 1.45 4.89 15 7 N -0.31 -15.96 11.62 -56.17 -0.65 -16.61 15 8 N -0.45 -25.30 7.52 -55.02 -0.41 -25.71 15 9 C 0.33 17.54 7.27 133.23 0.97 18.51 15 10 C -0.51 -27.46 9.50 23.09 0.22 -27.24 15 11 H 0.09 4.44 7.46 -2.91 -0.02 4.42 15 12 C 0.04 2.30 5.52 85.29 0.47 2.77 15 13 N -0.82 -44.20 13.65 21.86 0.30 -43.91 15 14 Si 1.14 58.38 25.90 68.60 1.78 60.15 15 15 H -0.30 -14.11 7.11 99.48 0.71 -13.40 15 16 H -0.28 -14.79 6.76 99.48 0.67 -14.12 15 17 H -0.29 -15.52 7.11 99.48 0.71 -14.82 15 18 N -0.51 -23.49 3.26 -543.63 -1.77 -25.26 15 19 C 0.09 3.07 10.89 127.77 1.39 4.46 15 20 H 0.10 0.80 8.14 -2.39 -0.02 0.78 15 21 H 0.10 0.78 8.14 -2.39 -0.02 0.76 15 22 H 0.10 0.78 8.14 -2.38 -0.02 0.76 15 23 H 0.11 3.44 8.14 -2.39 -0.02 3.42 15 24 H 0.11 3.43 8.14 -2.40 -0.02 3.41 15 25 H 0.29 14.68 8.72 -92.71 -0.81 13.87 15 26 H 0.08 2.39 8.14 -2.39 -0.02 2.37 15 27 H 0.10 2.72 7.85 -2.39 -0.02 2.71 15 28 H 0.08 2.77 7.48 -2.39 -0.02 2.75 15 Total: -1.00 -68.25 269.79 5.59 -62.66 By element: Atomic # 1 Polarization: -8.18 SS G_CDS: 1.10 Total: -7.07 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 6.48 Total: -3.62 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -2.54 Total: -111.49 kcal Atomic # 14 Polarization: 58.38 SS G_CDS: 1.78 Total: 60.15 kcal Atomic # 16 Polarization: 0.59 SS G_CDS: -1.23 Total: -0.63 kcal Total: -68.25 5.59 -62.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279826215.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.230 kcal (2) G-P(sol) polarization free energy of solvation -68.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds