Wall clock time and date at job start Sun Mar 29 2020 22:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47617 * 66.55993 * 3 2 1 5 5 C 1.36931 * 120.00346 * 264.11365 * 4 3 2 6 6 H 1.07994 * 120.00408 * 202.13662 * 5 4 3 7 7 C 1.38820 * 120.00047 * 22.13456 * 5 4 3 8 8 N 1.31624 * 119.99723 * 17.72214 * 7 5 4 9 9 Si 1.86792 * 120.00021 * 197.72441 * 7 5 4 10 10 H 1.48497 * 109.47378 * 90.00222 * 9 7 5 11 11 H 1.48513 * 109.46995 * 209.99979 * 9 7 5 12 12 H 1.48499 * 109.47252 * 329.99486 * 9 7 5 13 13 C 1.46504 * 119.99590 * 84.10676 * 4 3 2 14 14 C 1.53000 * 109.46800 * 90.00826 * 13 4 3 15 15 C 1.53005 * 109.46802 * 185.31240 * 14 13 4 16 16 H 1.08998 * 110.42209 * 57.43251 * 15 14 13 17 17 C 1.54915 * 110.37059 * 179.74124 * 15 14 13 18 18 C 1.55143 * 101.65026 * 155.89758 * 17 15 14 19 19 C 1.54322 * 103.02028 * 324.34822 * 18 17 15 20 20 N 1.47447 * 107.23204 * 22.28197 * 19 18 17 21 21 C 1.46899 * 110.99682 * 123.26109 * 20 19 18 22 22 H 4.40644 * 5.51440 * 180.02562 * 4 1 2 23 23 H 1.09007 * 109.47192 * 306.55920 * 3 2 1 24 24 H 1.09002 * 109.46976 * 186.56570 * 3 2 1 25 25 H 0.96996 * 119.99670 * 180.02562 * 8 7 5 26 26 H 1.08998 * 109.47346 * 330.00501 * 13 4 3 27 27 H 1.09005 * 109.47078 * 210.00179 * 13 4 3 28 28 H 1.08997 * 109.47753 * 65.31210 * 14 13 4 29 29 H 1.08999 * 109.47021 * 305.30852 * 14 13 4 30 30 H 1.08995 * 110.98801 * 37.81120 * 17 15 14 31 31 H 1.08996 * 110.98668 * 273.98979 * 17 15 14 32 32 H 1.09002 * 110.70572 * 205.96701 * 18 17 15 33 33 H 1.08997 * 110.70406 * 82.72842 * 18 17 15 34 34 H 1.08999 * 109.88661 * 262.87987 * 19 18 17 35 35 H 1.08997 * 110.02540 * 141.76492 * 19 18 17 36 36 H 1.08996 * 109.47404 * 54.54743 * 21 20 19 37 37 H 1.08997 * 109.47279 * 174.54821 * 21 20 19 38 38 H 1.09001 * 109.46952 * 294.54667 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.5485 -1.2672 5 6 3.4782 -1.8712 -1.3530 6 1 4.1524 -2.2049 -2.1279 7 6 2.9600 -2.7834 -0.4439 8 7 1.8957 -2.4730 0.2657 9 14 3.7730 -4.4511 -0.2276 10 1 4.8107 -4.3625 0.8309 11 1 2.7498 -5.4535 0.1650 12 1 4.4046 -4.8636 -1.5067 13 6 3.2557 0.3175 -2.4426 14 6 4.6505 0.9456 -2.4718 15 6 4.7333 1.9505 -3.6226 16 1 3.9622 2.7137 -3.5173 17 6 6.1368 2.6046 -3.6675 18 6 6.2317 3.0411 -5.1532 19 6 5.4927 1.9083 -5.8963 20 7 4.5979 1.2577 -4.9216 21 6 3.2051 1.2812 -5.3882 22 1 -1.0499 0.0001 -0.0003 23 1 3.0096 -0.6113 0.8255 24 1 3.0088 1.0218 0.1175 25 1 1.5338 -3.1102 0.9012 26 1 2.5036 1.1049 -2.3928 27 1 3.1042 -0.2731 -3.3462 28 1 5.3975 0.1652 -2.6165 29 1 4.8382 1.4577 -1.5281 30 1 6.9133 1.8797 -3.4232 31 1 6.1870 3.4672 -3.0031 32 1 7.2723 3.0968 -5.4729 33 1 5.7284 3.9955 -5.3074 34 1 6.2124 1.1849 -6.2794 35 1 4.9081 2.3206 -6.7187 36 1 3.1474 0.8377 -6.3821 37 1 2.5815 0.7115 -4.6993 38 1 2.8531 2.3120 -5.4293 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281224654.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:08 Heat of formation + Delta-G solvation = 82.578436 kcal Electronic energy + Delta-G solvation = -17074.981263 eV Core-core repulsion = 14533.796926 eV Total energy + Delta-G solvation = -2541.184337 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.06314 -36.04170 -32.46324 -31.93889 -31.43464 -30.10075 -26.89149 -25.86375 -25.47880 -23.14899 -21.12937 -20.47257 -19.54952 -17.37793 -16.29637 -16.05666 -15.44099 -14.72238 -14.08936 -13.82505 -13.54174 -13.31992 -13.07698 -12.71310 -12.56575 -12.10579 -11.69697 -11.48176 -11.28116 -11.10139 -11.02588 -10.82779 -10.74805 -10.48746 -10.37726 -10.19174 -9.89019 -9.80106 -8.81528 -8.65688 -8.33733 -8.08411 -6.79967 -5.66899 -3.13679 3.43184 3.50132 3.51545 4.17794 4.26736 4.47860 4.61936 4.72670 4.80480 5.01901 5.36297 5.46057 5.50462 5.55331 5.60213 5.68709 5.78464 5.81481 5.92109 5.93227 6.00905 6.07469 6.17118 6.29201 6.30661 6.53723 6.56852 6.79467 6.95546 7.13906 7.24260 7.31743 7.36537 7.52299 7.87506 8.43438 9.22390 9.30570 9.89203 10.37513 11.35795 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.025676 B = 0.006735 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.261583 B = 4156.223236 C = 4683.236284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.089 4.089 3 C 0.269 3.731 4 N -0.589 5.589 5 C -0.257 4.257 6 H 0.074 0.926 7 C 0.001 3.999 8 N -0.893 5.893 9 Si 0.901 3.099 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.280 1.280 13 C 0.151 3.849 14 C -0.119 4.119 15 C 0.075 3.925 16 H 0.049 0.951 17 C -0.125 4.125 18 C -0.143 4.143 19 C 0.041 3.959 20 N -0.525 5.525 21 C 0.015 3.985 22 H 0.188 0.812 23 H 0.090 0.910 24 H 0.033 0.967 25 H 0.253 0.747 26 H 0.027 0.973 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.723 10.660 -8.094 14.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 C -0.092 4.092 3 C 0.144 3.856 4 N -0.309 5.309 5 C -0.387 4.387 6 H 0.091 0.909 7 C -0.198 4.198 8 N -0.537 5.537 9 Si 0.731 3.269 10 H -0.215 1.215 11 H -0.220 1.220 12 H -0.205 1.205 13 C 0.024 3.976 14 C -0.159 4.159 15 C -0.034 4.034 16 H 0.067 0.933 17 C -0.163 4.163 18 C -0.181 4.181 19 C -0.087 4.087 20 N -0.249 5.249 21 C -0.134 4.134 22 H 0.206 0.794 23 H 0.108 0.892 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 5.791 9.996 -7.941 14.019 hybrid contribution -0.321 -0.230 -0.007 0.395 sum 5.469 9.766 -7.948 13.728 Atomic orbital electron populations 1.24131 0.95298 1.08689 1.04658 1.24328 0.95331 0.93266 0.96301 1.17690 0.82839 0.94651 0.90447 1.44030 1.75029 1.06774 1.05045 1.19225 1.21564 0.83229 1.14638 0.90862 1.25014 0.96164 0.97719 1.00900 1.70068 1.20298 1.35326 1.27989 0.86304 0.78582 0.83972 0.78013 1.21544 1.21994 1.20507 1.20903 0.92811 0.93067 0.90790 1.22113 1.01569 0.97511 0.94730 1.22697 0.95708 0.94652 0.90310 0.93301 1.22760 0.97767 1.00224 0.95568 1.22771 1.00754 0.98276 0.96312 1.22819 0.96128 0.95062 0.94641 1.63472 1.06439 1.52739 1.02252 1.22716 0.89843 0.99571 1.01251 0.79442 0.89202 0.94878 0.93677 0.95490 0.92517 0.91381 0.92524 0.90496 0.91204 0.91121 0.91950 0.90855 0.93259 0.91971 0.89946 0.96145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.33 19.25 29.55 0.57 -6.76 16 2 C -0.09 -2.25 11.37 -37.12 -0.42 -2.67 16 3 C 0.27 6.56 5.41 -6.83 -0.04 6.52 16 4 N -0.59 -14.71 2.48 -176.57 -0.44 -15.15 16 5 C -0.26 -7.06 9.63 -15.06 -0.15 -7.20 16 6 H 0.07 2.00 7.89 -52.49 -0.41 1.59 16 7 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 8 N -0.89 -26.00 9.41 55.49 0.52 -25.47 16 9 Si 0.90 22.03 29.59 -169.99 -5.03 17.00 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.15 3.15 4.48 -4.04 -0.02 3.13 16 14 C -0.12 -2.10 5.27 -26.73 -0.14 -2.24 16 15 C 0.07 1.09 2.59 -66.18 -0.17 0.92 16 16 H 0.05 0.72 7.70 -51.93 -0.40 0.32 16 17 C -0.12 -1.52 6.50 -24.59 -0.16 -1.68 16 18 C -0.14 -1.51 6.94 -24.90 -0.17 -1.68 16 19 C 0.04 0.49 6.89 -2.83 -0.02 0.47 16 20 N -0.52 -7.68 4.93 -231.60 -1.14 -8.82 16 21 C 0.01 0.20 8.82 60.06 0.53 0.73 16 22 H 0.19 3.76 7.80 -54.10 -0.42 3.33 16 23 H 0.09 2.37 6.67 -51.92 -0.35 2.03 16 24 H 0.03 0.71 8.12 -51.93 -0.42 0.29 16 25 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 27 H 0.06 1.24 6.08 -51.93 -0.32 0.92 16 28 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.53 7.58 -51.93 -0.39 0.14 16 36 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 37 H 0.08 1.29 5.37 -51.93 -0.28 1.01 16 38 H 0.02 0.26 7.98 -51.93 -0.41 -0.16 16 LS Contribution 306.41 15.07 4.62 4.62 Total: -1.00 -30.04 306.41 -8.08 -38.12 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.34 Total: 0.22 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -0.27 Total: -10.52 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -1.06 Total: -49.44 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.04 -8.08 -38.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281224654.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.694 kcal (2) G-P(sol) polarization free energy of solvation -30.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds