Wall clock time and date at job start Sun Mar 29 2020 22:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47617 * 66.55993 * 3 2 1 5 5 C 1.36931 * 120.00346 * 264.11365 * 4 3 2 6 6 H 1.07994 * 120.00408 * 202.13662 * 5 4 3 7 7 C 1.38820 * 120.00047 * 22.13456 * 5 4 3 8 8 N 1.31624 * 119.99723 * 17.72214 * 7 5 4 9 9 Si 1.86792 * 120.00021 * 197.72441 * 7 5 4 10 10 H 1.48497 * 109.47378 * 90.00222 * 9 7 5 11 11 H 1.48513 * 109.46995 * 209.99979 * 9 7 5 12 12 H 1.48499 * 109.47252 * 329.99486 * 9 7 5 13 13 C 1.46504 * 119.99590 * 84.10676 * 4 3 2 14 14 C 1.53000 * 109.46800 * 90.00826 * 13 4 3 15 15 C 1.53005 * 109.46802 * 185.31240 * 14 13 4 16 16 H 1.08998 * 110.42209 * 57.43251 * 15 14 13 17 17 C 1.54915 * 110.37059 * 179.74124 * 15 14 13 18 18 C 1.55143 * 101.65026 * 155.89758 * 17 15 14 19 19 C 1.54322 * 103.02028 * 324.34822 * 18 17 15 20 20 N 1.47447 * 107.23204 * 22.28197 * 19 18 17 21 21 C 1.46899 * 110.99682 * 123.26109 * 20 19 18 22 22 H 4.40644 * 5.51440 * 180.02562 * 4 1 2 23 23 H 1.09007 * 109.47192 * 306.55920 * 3 2 1 24 24 H 1.09002 * 109.46976 * 186.56570 * 3 2 1 25 25 H 0.96996 * 119.99670 * 180.02562 * 8 7 5 26 26 H 1.08998 * 109.47346 * 330.00501 * 13 4 3 27 27 H 1.09005 * 109.47078 * 210.00179 * 13 4 3 28 28 H 1.08997 * 109.47753 * 65.31210 * 14 13 4 29 29 H 1.08999 * 109.47021 * 305.30852 * 14 13 4 30 30 H 1.08995 * 110.98801 * 37.81120 * 17 15 14 31 31 H 1.08996 * 110.98668 * 273.98979 * 17 15 14 32 32 H 1.09002 * 110.70572 * 205.96701 * 18 17 15 33 33 H 1.08997 * 110.70406 * 82.72842 * 18 17 15 34 34 H 1.08999 * 109.88661 * 262.87987 * 19 18 17 35 35 H 1.08997 * 110.02540 * 141.76492 * 19 18 17 36 36 H 1.08996 * 109.47404 * 54.54743 * 21 20 19 37 37 H 1.08997 * 109.47279 * 174.54821 * 21 20 19 38 38 H 1.09001 * 109.46952 * 294.54667 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.5485 -1.2672 5 6 3.4782 -1.8712 -1.3530 6 1 4.1524 -2.2049 -2.1279 7 6 2.9600 -2.7834 -0.4439 8 7 1.8957 -2.4730 0.2657 9 14 3.7730 -4.4511 -0.2276 10 1 4.8107 -4.3625 0.8309 11 1 2.7498 -5.4535 0.1650 12 1 4.4046 -4.8636 -1.5067 13 6 3.2557 0.3175 -2.4426 14 6 4.6505 0.9456 -2.4718 15 6 4.7333 1.9505 -3.6226 16 1 3.9622 2.7137 -3.5173 17 6 6.1368 2.6046 -3.6675 18 6 6.2317 3.0411 -5.1532 19 6 5.4927 1.9083 -5.8963 20 7 4.5979 1.2577 -4.9216 21 6 3.2051 1.2812 -5.3882 22 1 -1.0499 0.0001 -0.0003 23 1 3.0096 -0.6113 0.8255 24 1 3.0088 1.0218 0.1175 25 1 1.5338 -3.1102 0.9012 26 1 2.5036 1.1049 -2.3928 27 1 3.1042 -0.2731 -3.3462 28 1 5.3975 0.1652 -2.6165 29 1 4.8382 1.4577 -1.5281 30 1 6.9133 1.8797 -3.4232 31 1 6.1870 3.4672 -3.0031 32 1 7.2723 3.0968 -5.4729 33 1 5.7284 3.9955 -5.3074 34 1 6.2124 1.1849 -6.2794 35 1 4.9081 2.3206 -6.7187 36 1 3.1474 0.8377 -6.3821 37 1 2.5815 0.7115 -4.6993 38 1 2.8531 2.3120 -5.4293 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281224654.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:08 Heat of formation + Delta-G solvation = 65.096773 kcal Electronic energy + Delta-G solvation = -17075.739324 eV Core-core repulsion = 14533.796926 eV Total energy + Delta-G solvation = -2541.942399 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.16293 -37.89234 -34.11369 -33.41603 -32.95133 -31.77586 -28.36232 -27.78132 -26.60133 -24.81686 -22.45141 -21.78815 -20.76431 -19.33005 -18.10009 -17.32688 -16.95826 -16.23596 -15.63873 -15.33755 -15.07509 -14.86940 -14.56661 -13.95142 -13.73882 -13.44231 -13.25423 -13.15937 -13.03764 -12.70619 -12.33438 -12.23292 -12.11758 -11.97741 -11.84003 -11.71526 -11.46534 -11.39369 -10.72475 -10.65502 -10.30362 -9.17132 -8.79535 -7.78381 -5.26506 1.47992 1.49288 1.57689 2.35219 2.53800 2.62114 3.12261 3.32117 3.69571 3.82823 3.94327 4.13144 4.13946 4.29150 4.48581 4.51545 4.54799 4.59996 4.65298 4.83222 4.87970 4.93894 4.99193 5.04601 5.08295 5.12508 5.21880 5.31012 5.36187 5.43932 5.60104 5.68769 5.69915 6.19064 6.25625 6.36269 7.15305 7.38365 7.87859 8.31936 9.21663 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.025676 B = 0.006735 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.261583 B = 4156.223236 C = 4683.236284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.128 4.128 3 C 0.272 3.728 4 N -0.603 5.603 5 C -0.263 4.263 6 H 0.068 0.932 7 C -0.048 4.048 8 N -0.917 5.917 9 Si 0.962 3.038 10 H -0.285 1.285 11 H -0.299 1.299 12 H -0.274 1.274 13 C 0.157 3.843 14 C -0.104 4.104 15 C 0.077 3.923 16 H 0.052 0.948 17 C -0.122 4.122 18 C -0.133 4.133 19 C 0.039 3.961 20 N -0.549 5.549 21 C 0.018 3.982 22 H 0.221 0.779 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.246 0.754 26 H 0.030 0.970 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.425 11.807 -9.074 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 C -0.131 4.131 3 C 0.147 3.853 4 N -0.324 5.324 5 C -0.393 4.393 6 H 0.085 0.915 7 C -0.244 4.244 8 N -0.562 5.562 9 Si 0.791 3.209 10 H -0.211 1.211 11 H -0.226 1.226 12 H -0.199 1.199 13 C 0.032 3.968 14 C -0.144 4.144 15 C -0.032 4.032 16 H 0.070 0.930 17 C -0.161 4.161 18 C -0.171 4.171 19 C -0.089 4.089 20 N -0.274 5.274 21 C -0.130 4.130 22 H 0.237 0.763 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 6.513 11.168 -8.948 15.723 hybrid contribution -0.578 -0.562 0.253 0.845 sum 5.935 10.605 -8.695 14.943 Atomic orbital electron populations 1.24963 0.96343 1.07334 1.03220 1.24721 0.96202 0.94551 0.97670 1.17627 0.82860 0.95449 0.89406 1.44248 1.75192 1.06588 1.06381 1.19410 1.21046 0.84577 1.14302 0.91457 1.25672 0.96785 1.00842 1.01065 1.70236 1.21442 1.36004 1.28512 0.85344 0.77442 0.80097 0.77989 1.21135 1.22588 1.19866 1.20955 0.94796 0.92339 0.88754 1.21885 0.98449 0.97557 0.96535 1.22591 0.97602 0.93672 0.89289 0.93006 1.22738 0.95602 1.00375 0.97337 1.22746 1.01827 0.98068 0.94504 1.22880 0.95905 0.95544 0.94523 1.63383 1.07138 1.53883 1.02959 1.22637 0.89331 0.99969 1.01062 0.76260 0.91862 0.92092 0.94461 0.95192 0.93946 0.93419 0.92299 0.91258 0.89678 0.89334 0.90740 0.90930 0.91927 0.90845 0.92456 0.94897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.96 19.25 74.32 1.43 -12.53 16 2 C -0.13 -6.48 11.37 31.12 0.35 -6.13 16 3 C 0.27 13.39 5.41 84.57 0.46 13.85 16 4 N -0.60 -30.51 2.48 -712.55 -1.77 -32.28 16 5 C -0.26 -14.66 9.63 84.04 0.81 -13.85 16 6 H 0.07 3.74 7.89 -2.91 -0.02 3.72 16 7 C -0.05 -2.69 4.92 84.86 0.42 -2.27 16 8 N -0.92 -54.10 9.41 21.65 0.20 -53.90 16 9 Si 0.96 45.85 29.59 68.60 2.03 47.88 16 10 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 11 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 12 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 13 C 0.16 6.59 4.48 86.38 0.39 6.98 16 14 C -0.10 -3.65 5.27 30.60 0.16 -3.48 16 15 C 0.08 2.14 2.59 45.39 0.12 2.26 16 16 H 0.05 1.42 7.70 -2.39 -0.02 1.40 16 17 C -0.12 -2.69 6.50 31.98 0.21 -2.48 16 18 C -0.13 -2.38 6.94 31.78 0.22 -2.16 16 19 C 0.04 0.83 6.89 86.65 0.60 1.43 16 20 N -0.55 -15.35 4.93 -886.63 -4.37 -19.72 16 21 C 0.02 0.49 8.82 127.69 1.13 1.62 16 22 H 0.22 8.33 7.80 -4.42 -0.03 8.29 16 23 H 0.06 3.43 6.67 -2.38 -0.02 3.41 16 24 H 0.06 2.59 8.12 -2.39 -0.02 2.57 16 25 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 26 H 0.03 1.23 8.07 -2.39 -0.02 1.21 16 27 H 0.04 1.89 6.08 -2.38 -0.01 1.88 16 28 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 1.63 8.06 -2.39 -0.02 1.61 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.17 7.58 -2.39 -0.02 1.16 16 36 H 0.07 1.74 8.13 -2.39 -0.02 1.72 16 37 H 0.06 1.80 5.37 -2.39 -0.01 1.79 16 38 H 0.03 0.78 7.98 -2.39 -0.02 0.76 16 Total: -1.00 -63.94 306.41 3.38 -60.55 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 1.00 Total: 14.23 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 6.29 Total: -16.77 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -5.93 Total: -105.90 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -63.94 3.38 -60.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281224654.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.651 kcal (2) G-P(sol) polarization free energy of solvation -63.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds