Wall clock time and date at job start Sun Mar 29 2020 21:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46961 * 269.39885 * 3 2 1 5 5 C 1.36944 * 120.00074 * 263.91506 * 4 3 2 6 6 H 1.07998 * 120.00111 * 199.40382 * 5 4 3 7 7 C 1.38813 * 119.99758 * 19.40340 * 5 4 3 8 8 N 1.31614 * 120.00398 * 22.27409 * 7 5 4 9 9 Si 1.86798 * 119.99660 * 202.27856 * 7 5 4 10 10 H 1.48498 * 109.47771 * 89.99845 * 9 7 5 11 11 H 1.48500 * 109.47074 * 209.99783 * 9 7 5 12 12 H 1.48504 * 109.47267 * 329.99669 * 9 7 5 13 13 C 1.46500 * 119.99907 * 83.91917 * 4 3 2 14 14 C 1.53001 * 109.47155 * 89.99797 * 13 4 3 15 15 N 1.46900 * 109.46737 * 179.97438 * 14 13 4 16 16 C 1.46842 * 111.00241 * 45.78975 * 15 14 13 17 17 C 1.53038 * 109.52653 * 185.83574 * 16 15 14 18 18 C 1.53116 * 109.27886 * 300.82251 * 17 16 15 19 19 C 1.53127 * 109.16167 * 57.65090 * 18 17 16 20 20 C 1.46851 * 110.99926 * 170.00151 * 15 14 13 21 21 H 4.40639 * 5.51418 * 180.02562 * 4 1 2 22 22 H 1.09008 * 109.46982 * 149.40245 * 3 2 1 23 23 H 1.08997 * 109.47221 * 29.40411 * 3 2 1 24 24 H 0.97001 * 120.00427 * 180.02562 * 8 7 5 25 25 H 1.08995 * 109.46979 * 329.99240 * 13 4 3 26 26 H 1.08999 * 109.46843 * 209.99804 * 13 4 3 27 27 H 1.09002 * 109.47002 * 60.00403 * 14 13 4 28 28 H 1.08996 * 109.46790 * 299.99956 * 14 13 4 29 29 H 1.09011 * 109.46192 * 65.81963 * 16 15 14 30 30 H 1.08999 * 109.46427 * 305.85871 * 16 15 14 31 31 H 1.09000 * 109.50338 * 180.88460 * 17 16 15 32 32 H 1.08994 * 109.49882 * 60.76428 * 17 16 15 33 33 H 1.08998 * 109.52171 * 177.55832 * 18 17 16 34 34 H 1.09003 * 109.52540 * 297.74931 * 18 17 16 35 35 H 1.08998 * 109.49637 * 62.28432 * 19 18 17 36 36 H 1.08992 * 109.50068 * 182.40472 * 19 18 17 37 37 H 1.09000 * 109.46249 * 54.14174 * 20 15 14 38 38 H 1.09001 * 109.45776 * 294.17699 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0154 1.3812 5 6 3.4805 1.2011 1.9724 6 1 4.1191 1.2040 2.8434 7 6 3.0106 2.3992 1.4523 8 7 1.9261 2.4127 0.7067 9 14 3.9177 3.9924 1.8104 10 1 4.9423 4.2254 0.7611 11 1 2.9522 5.1207 1.8186 12 1 4.5798 3.8978 3.1363 13 6 3.2523 -1.2384 2.1297 14 6 4.6457 -1.8321 1.9138 15 7 4.7642 -3.0890 2.6650 16 6 3.5778 -3.9322 2.4704 17 6 3.6696 -5.1614 3.3774 18 6 4.9388 -5.9473 3.0369 19 6 6.1557 -5.0324 3.2010 20 6 5.9918 -3.8070 2.2992 21 1 -1.0500 -0.0002 0.0000 22 1 3.0089 0.8855 -0.5231 23 1 3.0097 -0.8944 -0.5045 24 1 1.5980 3.2499 0.3429 25 1 2.4986 -1.9433 1.7789 26 1 3.1009 -1.0432 3.1914 27 1 5.3994 -1.1271 2.2648 28 1 4.7970 -2.0272 0.8522 29 1 3.5262 -4.2519 1.4295 30 1 2.6826 -3.3627 2.7199 31 1 2.7964 -5.7949 3.2212 32 1 3.7072 -4.8429 4.4191 33 1 5.0307 -6.8000 3.7096 34 1 4.8840 -6.2992 2.0067 35 1 6.2324 -4.7120 4.2400 36 1 7.0586 -5.5738 2.9189 37 1 6.8498 -3.1466 2.4243 38 1 5.9289 -4.1273 1.2592 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281357980.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:41 Heat of formation + Delta-G solvation = 77.603918 kcal Electronic energy + Delta-G solvation = -16981.889660 eV Core-core repulsion = 14440.489612 eV Total energy + Delta-G solvation = -2541.400048 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.85991 -36.14228 -33.58777 -31.52839 -31.11375 -30.63771 -27.71160 -25.95421 -24.48861 -22.94423 -22.17790 -20.17975 -19.44433 -17.43593 -16.27773 -16.01850 -14.93638 -14.65841 -14.40216 -14.24845 -13.61085 -13.51379 -13.36924 -12.96303 -12.67092 -12.25584 -11.98155 -11.37434 -11.22724 -11.15487 -11.04967 -10.80286 -10.71715 -10.42322 -10.25218 -10.18757 -10.05352 -9.80755 -8.91675 -8.72177 -8.42237 -7.94311 -6.94815 -5.75780 -3.18568 3.39577 3.47138 3.48223 4.07051 4.33024 4.40504 4.57466 4.89123 4.94671 4.99430 5.31399 5.37372 5.51246 5.61317 5.70172 5.70535 5.76423 5.83063 5.89133 5.92334 5.97109 6.00337 6.16464 6.19233 6.25844 6.38266 6.42550 6.67029 6.77041 6.91094 7.20697 7.42805 7.45784 7.49338 7.80924 8.32927 9.13258 9.21962 9.80671 10.27590 11.27783 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.029654 B = 0.006232 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.992332 B = 4491.561702 C = 5175.841419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.096 4.096 3 C 0.269 3.731 4 N -0.586 5.586 5 C -0.265 4.265 6 H 0.075 0.925 7 C 0.004 3.996 8 N -0.888 5.888 9 Si 0.899 3.101 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.279 1.279 13 C 0.148 3.852 14 C 0.039 3.961 15 N -0.537 5.537 16 C 0.049 3.951 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.116 4.116 20 C 0.056 3.944 21 H 0.190 0.810 22 H 0.092 0.908 23 H 0.034 0.966 24 H 0.254 0.746 25 H 0.038 0.962 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.025 0.975 29 H 0.027 0.973 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.104 -13.542 1.764 14.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 C -0.099 4.099 3 C 0.144 3.856 4 N -0.306 5.306 5 C -0.394 4.394 6 H 0.093 0.907 7 C -0.195 4.195 8 N -0.531 5.531 9 Si 0.729 3.271 10 H -0.215 1.215 11 H -0.220 1.220 12 H -0.205 1.205 13 C 0.021 3.979 14 C -0.091 4.091 15 N -0.262 5.262 16 C -0.079 4.079 17 C -0.155 4.155 18 C -0.158 4.158 19 C -0.154 4.154 20 C -0.072 4.072 21 H 0.207 0.793 22 H 0.109 0.891 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 5.078 -13.251 2.205 14.361 hybrid contribution 0.030 0.874 -0.707 1.125 sum 5.108 -12.377 1.498 13.473 Atomic orbital electron populations 1.24173 0.95329 1.08084 1.04408 1.24301 0.95323 0.93871 0.96403 1.17707 0.82910 0.98749 0.86272 1.44011 1.74874 1.02276 1.09480 1.19220 1.24380 0.83037 1.12756 0.90675 1.24937 0.96097 0.97859 1.00657 1.70136 1.19384 1.25656 1.37881 0.86337 0.79248 0.83469 0.78047 1.21474 1.21957 1.20457 1.20895 0.92412 0.87932 0.96636 1.22851 1.02030 0.89557 0.94669 1.61989 1.01600 1.05099 1.57533 1.22189 0.94537 0.93998 0.97216 1.21599 0.97138 0.96072 1.00671 1.21574 0.95391 0.97835 1.01005 1.21576 0.97351 0.95594 1.00836 1.22047 0.93463 0.95217 0.96505 0.79274 0.89053 0.94837 0.93582 0.94332 0.92600 0.90643 0.95706 0.95450 0.89777 0.91986 0.91206 0.92273 0.92582 0.91214 0.92102 0.91056 0.95474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.01 19.25 29.55 0.57 -6.44 16 2 C -0.10 -2.38 11.50 -37.12 -0.43 -2.81 16 3 C 0.27 6.47 5.41 -6.83 -0.04 6.44 16 4 N -0.59 -14.44 2.49 -176.57 -0.44 -14.88 16 5 C -0.27 -7.16 9.63 -15.06 -0.14 -7.30 16 6 H 0.08 2.01 7.92 -52.49 -0.42 1.59 16 7 C 0.00 0.10 4.82 -17.43 -0.08 0.02 16 8 N -0.89 -25.50 9.61 55.49 0.53 -24.97 16 9 Si 0.90 21.63 29.61 -169.99 -5.03 16.59 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 C 0.15 3.08 4.92 -4.04 -0.02 3.06 16 14 C 0.04 0.70 5.60 -3.82 -0.02 0.67 16 15 N -0.54 -8.33 4.81 -234.67 -1.13 -9.46 16 16 C 0.05 0.69 4.85 -3.84 -0.02 0.68 16 17 C -0.12 -1.37 6.09 -26.65 -0.16 -1.53 16 18 C -0.12 -1.27 6.00 -26.61 -0.16 -1.43 16 19 C -0.12 -1.27 6.09 -26.65 -0.16 -1.44 16 20 C 0.06 0.74 5.42 -3.84 -0.02 0.72 16 21 H 0.19 3.70 7.80 -54.09 -0.42 3.28 16 22 H 0.09 2.38 6.59 -51.92 -0.34 2.04 16 23 H 0.03 0.71 8.12 -51.93 -0.42 0.29 16 24 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.04 0.78 6.14 -51.93 -0.32 0.46 16 26 H 0.06 1.22 8.04 -51.93 -0.42 0.80 16 27 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.02 0.45 8.08 -51.93 -0.42 0.03 16 29 H 0.03 0.40 8.14 -51.92 -0.42 -0.03 16 30 H 0.08 1.29 5.81 -51.93 -0.30 0.99 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 38 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 305.63 15.07 4.61 4.61 Total: -1.00 -29.18 305.63 -8.57 -37.76 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.42 Total: -0.29 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -0.69 Total: -9.36 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -1.03 Total: -49.31 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.18 -8.57 -37.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281357980.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.359 kcal (2) G-P(sol) polarization free energy of solvation -29.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds