Wall clock time and date at job start Sun Mar 29 2020 21:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46961 * 269.39885 * 3 2 1 5 5 C 1.36944 * 120.00074 * 263.91506 * 4 3 2 6 6 H 1.07998 * 120.00111 * 199.40382 * 5 4 3 7 7 C 1.38813 * 119.99758 * 19.40340 * 5 4 3 8 8 N 1.31614 * 120.00398 * 22.27409 * 7 5 4 9 9 Si 1.86798 * 119.99660 * 202.27856 * 7 5 4 10 10 H 1.48498 * 109.47771 * 89.99845 * 9 7 5 11 11 H 1.48500 * 109.47074 * 209.99783 * 9 7 5 12 12 H 1.48504 * 109.47267 * 329.99669 * 9 7 5 13 13 C 1.46500 * 119.99907 * 83.91917 * 4 3 2 14 14 C 1.53001 * 109.47155 * 89.99797 * 13 4 3 15 15 N 1.46900 * 109.46737 * 179.97438 * 14 13 4 16 16 C 1.46842 * 111.00241 * 45.78975 * 15 14 13 17 17 C 1.53038 * 109.52653 * 185.83574 * 16 15 14 18 18 C 1.53116 * 109.27886 * 300.82251 * 17 16 15 19 19 C 1.53127 * 109.16167 * 57.65090 * 18 17 16 20 20 C 1.46851 * 110.99926 * 170.00151 * 15 14 13 21 21 H 4.40639 * 5.51418 * 180.02562 * 4 1 2 22 22 H 1.09008 * 109.46982 * 149.40245 * 3 2 1 23 23 H 1.08997 * 109.47221 * 29.40411 * 3 2 1 24 24 H 0.97001 * 120.00427 * 180.02562 * 8 7 5 25 25 H 1.08995 * 109.46979 * 329.99240 * 13 4 3 26 26 H 1.08999 * 109.46843 * 209.99804 * 13 4 3 27 27 H 1.09002 * 109.47002 * 60.00403 * 14 13 4 28 28 H 1.08996 * 109.46790 * 299.99956 * 14 13 4 29 29 H 1.09011 * 109.46192 * 65.81963 * 16 15 14 30 30 H 1.08999 * 109.46427 * 305.85871 * 16 15 14 31 31 H 1.09000 * 109.50338 * 180.88460 * 17 16 15 32 32 H 1.08994 * 109.49882 * 60.76428 * 17 16 15 33 33 H 1.08998 * 109.52171 * 177.55832 * 18 17 16 34 34 H 1.09003 * 109.52540 * 297.74931 * 18 17 16 35 35 H 1.08998 * 109.49637 * 62.28432 * 19 18 17 36 36 H 1.08992 * 109.50068 * 182.40472 * 19 18 17 37 37 H 1.09000 * 109.46249 * 54.14174 * 20 15 14 38 38 H 1.09001 * 109.45776 * 294.17699 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0154 1.3812 5 6 3.4805 1.2011 1.9724 6 1 4.1191 1.2040 2.8434 7 6 3.0106 2.3992 1.4523 8 7 1.9261 2.4127 0.7067 9 14 3.9177 3.9924 1.8104 10 1 4.9423 4.2254 0.7611 11 1 2.9522 5.1207 1.8186 12 1 4.5798 3.8978 3.1363 13 6 3.2523 -1.2384 2.1297 14 6 4.6457 -1.8321 1.9138 15 7 4.7642 -3.0890 2.6650 16 6 3.5778 -3.9322 2.4704 17 6 3.6696 -5.1614 3.3774 18 6 4.9388 -5.9473 3.0369 19 6 6.1557 -5.0324 3.2010 20 6 5.9918 -3.8070 2.2992 21 1 -1.0500 -0.0002 0.0000 22 1 3.0089 0.8855 -0.5231 23 1 3.0097 -0.8944 -0.5045 24 1 1.5980 3.2499 0.3429 25 1 2.4986 -1.9433 1.7789 26 1 3.1009 -1.0432 3.1914 27 1 5.3994 -1.1271 2.2648 28 1 4.7970 -2.0272 0.8522 29 1 3.5262 -4.2519 1.4295 30 1 2.6826 -3.3627 2.7199 31 1 2.7964 -5.7949 3.2212 32 1 3.7072 -4.8429 4.4191 33 1 5.0307 -6.8000 3.7096 34 1 4.8840 -6.2992 2.0067 35 1 6.2324 -4.7120 4.2400 36 1 7.0586 -5.5738 2.9189 37 1 6.8498 -3.1466 2.4243 38 1 5.9289 -4.1273 1.2592 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281357980.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:41 Heat of formation + Delta-G solvation = 61.104365 kcal Electronic energy + Delta-G solvation = -16982.605135 eV Core-core repulsion = 14440.489612 eV Total energy + Delta-G solvation = -2542.115522 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.03557 -37.91973 -34.90807 -33.49416 -32.78999 -31.74681 -29.29178 -27.91174 -25.90024 -24.15420 -23.61469 -21.68143 -20.52054 -19.36618 -18.14220 -17.43571 -16.58195 -16.05110 -15.83485 -15.30667 -15.23992 -15.07509 -14.85497 -14.27752 -14.00485 -13.73790 -13.23270 -13.12901 -12.94093 -12.76094 -12.64619 -12.25407 -12.11573 -12.00996 -11.81834 -11.52766 -11.20827 -11.12914 -10.81111 -10.69736 -10.35955 -9.19548 -8.92944 -7.83872 -5.27980 1.47910 1.50058 1.58015 2.28213 2.50244 2.58516 3.01247 3.27860 3.84452 3.97354 3.98146 4.07281 4.08541 4.27842 4.29092 4.44983 4.57933 4.60370 4.70380 4.73742 4.84979 4.90163 4.99347 5.09573 5.11386 5.13584 5.20413 5.26311 5.31840 5.36344 5.52830 5.62068 5.66967 6.16963 6.28316 6.30997 7.09326 7.33460 7.81387 8.25122 9.17525 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.029654 B = 0.006232 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.992332 B = 4491.561702 C = 5175.841419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.136 4.136 3 C 0.273 3.727 4 N -0.600 5.600 5 C -0.272 4.272 6 H 0.072 0.928 7 C -0.044 4.044 8 N -0.913 5.913 9 Si 0.961 3.039 10 H -0.285 1.285 11 H -0.299 1.299 12 H -0.272 1.272 13 C 0.155 3.845 14 C 0.057 3.943 15 N -0.544 5.544 16 C 0.047 3.953 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.111 4.111 20 C 0.053 3.947 21 H 0.223 0.777 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.247 0.753 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.022 0.978 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.652 -14.981 2.174 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.139 4.139 3 C 0.147 3.853 4 N -0.321 5.321 5 C -0.401 4.401 6 H 0.090 0.910 7 C -0.240 4.240 8 N -0.557 5.557 9 Si 0.790 3.210 10 H -0.212 1.212 11 H -0.226 1.226 12 H -0.197 1.197 13 C 0.029 3.971 14 C -0.073 4.073 15 N -0.270 5.270 16 C -0.081 4.081 17 C -0.151 4.151 18 C -0.156 4.156 19 C -0.149 4.149 20 C -0.075 4.075 21 H 0.240 0.760 22 H 0.084 0.916 23 H 0.077 0.923 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 5.646 -14.728 2.629 15.990 hybrid contribution -0.174 1.253 -0.817 1.506 sum 5.472 -13.474 1.812 14.655 Atomic orbital electron populations 1.25015 0.96368 1.06606 1.02937 1.24674 0.96172 0.95253 0.97820 1.17624 0.82985 0.98644 0.86006 1.44192 1.75090 1.02807 1.10004 1.19440 1.23857 0.84226 1.12600 0.91015 1.25600 0.96781 1.00510 1.01127 1.70290 1.20589 1.25708 1.39136 0.85365 0.77862 0.79700 0.78075 1.21157 1.22630 1.19718 1.20902 0.94247 0.86749 0.95197 1.22460 0.99452 0.90682 0.94733 1.61994 1.03125 1.04773 1.57061 1.22222 0.93324 0.94699 0.97840 1.21587 0.98756 0.95148 0.99605 1.21580 0.94167 0.98062 1.01747 1.21569 0.98679 0.94697 0.99948 1.22159 0.92134 0.96026 0.97212 0.76030 0.91628 0.92350 0.94328 0.93710 0.94151 0.92087 0.95940 0.95606 0.91383 0.90422 0.91667 0.90250 0.92231 0.91621 0.89936 0.91148 0.95392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -13.25 19.25 74.32 1.43 -11.82 16 2 C -0.14 -6.77 11.50 31.13 0.36 -6.41 16 3 C 0.27 13.27 5.41 84.58 0.46 13.72 16 4 N -0.60 -29.89 2.49 -712.54 -1.77 -31.67 16 5 C -0.27 -14.83 9.63 84.03 0.81 -14.02 16 6 H 0.07 3.88 7.92 -2.91 -0.02 3.85 16 7 C -0.04 -2.41 4.82 84.86 0.41 -2.00 16 8 N -0.91 -53.09 9.61 21.65 0.21 -52.88 16 9 Si 0.96 44.94 29.61 68.60 2.03 46.97 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 C 0.15 6.49 4.92 86.38 0.43 6.92 16 14 C 0.06 2.04 5.60 86.30 0.48 2.52 16 15 N -0.54 -16.44 4.81 -896.36 -4.31 -20.75 16 16 C 0.05 1.29 4.85 86.33 0.42 1.71 16 17 C -0.11 -2.41 6.09 30.65 0.19 -2.22 16 18 C -0.12 -2.13 6.00 30.68 0.18 -1.94 16 19 C -0.11 -2.16 6.09 30.65 0.19 -1.97 16 20 C 0.05 1.31 5.42 86.32 0.47 1.78 16 21 H 0.22 8.17 7.80 -4.42 -0.03 8.14 16 22 H 0.07 3.51 6.59 -2.38 -0.02 3.49 16 23 H 0.06 2.48 8.12 -2.39 -0.02 2.46 16 24 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 25 H 0.04 1.81 6.14 -2.39 -0.01 1.80 16 26 H 0.04 1.79 8.04 -2.39 -0.02 1.77 16 27 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.02 0.81 8.08 -2.39 -0.02 0.79 16 29 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.07 2.06 5.81 -2.39 -0.01 2.05 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 1.75 8.12 -2.39 -0.02 1.73 16 38 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -61.73 305.63 2.97 -58.76 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 1.00 Total: 13.31 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 5.82 Total: -13.74 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -5.87 Total: -105.30 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -61.73 2.97 -58.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281357980.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.864 kcal (2) G-P(sol) polarization free energy of solvation -61.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds