Wall clock time and date at job start Sun Mar 29 2020 21:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47418 * 56.61060 * 3 2 1 5 5 C 1.36929 * 119.99999 * 264.23093 * 4 3 2 6 6 H 1.08004 * 120.00219 * 196.87388 * 5 4 3 7 7 C 1.38811 * 120.00262 * 16.86675 * 5 4 3 8 8 N 1.31622 * 120.00003 * 22.14743 * 7 5 4 9 9 Si 1.86800 * 120.00109 * 202.14958 * 7 5 4 10 10 H 1.48504 * 109.47197 * 59.99943 * 9 7 5 11 11 H 1.48504 * 109.46978 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47083 * 299.99583 * 9 7 5 13 13 C 1.46500 * 119.99840 * 84.22262 * 4 3 2 14 14 C 1.53002 * 109.47464 * 270.00397 * 13 4 3 15 15 C 1.52999 * 109.47158 * 180.02562 * 14 13 4 16 16 N 1.46905 * 109.47028 * 180.02562 * 15 14 13 17 17 C 1.48533 * 111.00349 * 52.59763 * 16 15 14 18 18 C 1.54930 * 103.22935 * 159.72134 * 17 16 15 19 19 C 1.54602 * 102.92141 * 322.58969 * 18 17 16 20 20 C 1.47903 * 111.00027 * 169.99881 * 16 15 14 21 21 H 4.40647 * 5.51421 * 179.97438 * 4 1 2 22 22 H 1.08993 * 109.47402 * 296.61057 * 3 2 1 23 23 H 1.09005 * 109.46706 * 176.60605 * 3 2 1 24 24 H 0.96999 * 120.00041 * 180.02562 * 8 7 5 25 25 H 1.09004 * 109.47445 * 30.00072 * 13 4 3 26 26 H 1.09005 * 109.46818 * 150.00143 * 13 4 3 27 27 H 1.09004 * 109.46956 * 299.99921 * 14 13 4 28 28 H 1.08996 * 109.47160 * 60.00238 * 14 13 4 29 29 H 1.09004 * 109.46755 * 299.99594 * 15 14 13 30 30 H 1.08996 * 109.47258 * 59.99848 * 15 14 13 31 31 H 1.09000 * 110.66988 * 278.16399 * 17 16 15 32 32 H 1.09004 * 110.66266 * 41.28707 * 17 16 15 33 33 H 1.08998 * 110.72867 * 204.22948 * 18 17 16 34 34 H 1.09001 * 110.72320 * 80.94266 * 18 17 16 35 35 H 1.09003 * 110.30465 * 263.03888 * 19 18 17 36 36 H 1.09003 * 110.31000 * 140.87104 * 19 18 17 37 37 H 1.08997 * 109.91168 * 333.50577 * 20 16 15 38 38 H 1.08992 * 109.91586 * 94.60133 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.7592 -1.1532 5 6 3.4760 -2.0775 -1.0097 6 1 4.0812 -2.5636 -1.7607 7 6 3.0442 -2.7893 0.1010 8 7 1.9904 -2.3808 0.7756 9 14 3.9586 -4.3270 0.6384 10 1 5.3660 -3.9789 0.9603 11 1 3.3026 -4.8977 1.8423 12 1 3.9345 -5.3264 -0.4596 13 6 3.2583 -0.1087 -2.4601 14 6 1.9483 -0.2672 -3.2346 15 6 2.0776 0.4116 -4.5996 16 7 0.8197 0.2599 -5.3430 17 6 -0.3367 0.7203 -4.5324 18 6 -1.4312 0.9876 -5.5958 19 6 -0.6284 1.5798 -6.7769 20 6 0.8187 1.1000 -6.5603 21 1 -1.0499 -0.0003 -0.0001 22 1 3.0096 -0.4595 0.9187 23 1 3.0088 1.0268 -0.0608 24 1 1.6889 -2.8779 1.5520 25 1 3.4713 0.9511 -2.3197 26 1 4.0704 -0.5714 -3.0209 27 1 1.7353 -1.3270 -3.3750 28 1 1.1363 0.1955 -2.6738 29 1 2.2909 1.4714 -4.4596 30 1 2.8895 -0.0514 -5.1603 31 1 -0.6553 -0.0585 -3.8396 32 1 -0.0898 1.6364 -3.9957 33 1 -2.1609 1.7078 -5.2258 34 1 -1.9194 0.0582 -5.8889 35 1 -0.6730 2.6687 -6.7564 36 1 -1.0144 1.2022 -7.7238 37 1 1.4772 1.9572 -6.4203 38 1 1.1506 0.5131 -7.4167 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281531898.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:12 Heat of formation + Delta-G solvation = 79.818476 kcal Electronic energy + Delta-G solvation = -16931.374463 eV Core-core repulsion = 14390.070445 eV Total energy + Delta-G solvation = -2541.304018 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.80819 -36.29398 -33.43680 -31.50695 -31.14521 -29.17995 -28.56050 -26.02299 -24.85363 -22.41090 -21.01567 -20.56857 -19.72931 -17.41138 -16.42261 -15.89388 -15.70316 -14.75070 -14.58184 -13.91664 -13.59758 -13.41592 -13.13195 -12.64077 -12.41835 -12.07228 -11.47880 -11.38663 -11.33923 -11.06178 -10.98219 -10.85619 -10.73627 -10.60106 -10.47236 -10.23787 -10.03721 -9.70898 -8.84383 -8.71616 -8.36101 -8.18817 -6.94667 -5.73827 -3.13523 3.41567 3.47846 3.48693 4.18007 4.25866 4.43061 4.58658 4.72750 4.78421 4.99040 5.37379 5.39365 5.47102 5.57637 5.58493 5.74831 5.78378 5.84092 5.87516 5.89343 6.06033 6.12616 6.18210 6.21897 6.25061 6.45167 6.51111 6.72718 6.97012 7.09838 7.20138 7.27827 7.36373 7.48314 7.80372 8.34537 9.15931 9.24226 9.83519 10.29835 11.30230 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.031952 B = 0.005950 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.108624 B = 4704.697698 C = 5015.375640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C -0.090 4.090 3 C 0.266 3.734 4 N -0.587 5.587 5 C -0.261 4.261 6 H 0.075 0.925 7 C 0.002 3.998 8 N -0.890 5.890 9 Si 0.899 3.101 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.284 1.284 13 C 0.151 3.849 14 C -0.139 4.139 15 C 0.050 3.950 16 N -0.518 5.518 17 C 0.038 3.962 18 C -0.125 4.125 19 C -0.130 4.130 20 C 0.034 3.966 21 H 0.188 0.812 22 H 0.096 0.904 23 H 0.034 0.966 24 H 0.254 0.746 25 H 0.036 0.964 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.040 0.960 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.953 8.489 -10.239 13.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 C -0.093 4.093 3 C 0.141 3.859 4 N -0.306 5.306 5 C -0.390 4.390 6 H 0.092 0.908 7 C -0.197 4.197 8 N -0.534 5.534 9 Si 0.729 3.271 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.210 1.210 13 C 0.024 3.976 14 C -0.179 4.179 15 C -0.079 4.079 16 N -0.242 5.242 17 C -0.090 4.090 18 C -0.163 4.163 19 C -0.168 4.168 20 C -0.095 4.095 21 H 0.205 0.795 22 H 0.114 0.886 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.993 7.838 -10.215 13.219 hybrid contribution 0.030 -0.199 0.499 0.538 sum -2.964 7.639 -9.716 12.709 Atomic orbital electron populations 1.24128 0.95282 1.07915 1.05254 1.24341 0.95298 0.93793 0.95860 1.17825 0.82878 0.92365 0.92838 1.44177 1.74675 1.08939 1.02829 1.19181 1.26079 0.86890 1.06882 0.90763 1.24889 0.96520 0.98060 1.00240 1.70122 1.21578 1.40833 1.20854 0.86412 0.79672 0.83006 0.77995 1.21094 1.21782 1.21042 1.20846 0.94604 0.95338 0.86830 1.22352 1.01284 1.01466 0.92794 1.22368 0.91344 0.98252 0.95886 1.64813 1.03484 1.50686 1.05244 1.23195 0.90643 0.99350 0.95797 1.22501 0.97457 1.00967 0.95415 1.22390 0.95240 1.00063 0.99147 1.22869 0.96337 0.95511 0.94735 0.79463 0.88622 0.94763 0.93572 0.94584 0.93424 0.91335 0.92160 0.95500 0.91169 0.89633 0.93910 0.91368 0.90896 0.91864 0.91327 0.94155 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.06 19.25 29.55 0.57 -6.49 16 2 C -0.09 -2.20 10.54 -37.12 -0.39 -2.59 16 3 C 0.27 6.39 5.45 -6.83 -0.04 6.35 16 4 N -0.59 -14.42 2.50 -176.57 -0.44 -14.86 16 5 C -0.26 -7.06 9.66 -15.06 -0.15 -7.21 16 6 H 0.07 1.98 7.90 -52.48 -0.41 1.56 16 7 C 0.00 0.05 4.85 -17.43 -0.08 -0.04 16 8 N -0.89 -25.52 9.50 55.49 0.53 -24.99 16 9 Si 0.90 21.68 29.61 -169.99 -5.03 16.65 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.15 3.09 5.70 -4.04 -0.02 3.06 16 14 C -0.14 -2.71 5.05 -26.73 -0.14 -2.84 16 15 C 0.05 0.80 5.03 -3.82 -0.02 0.78 16 16 N -0.52 -7.97 5.40 -230.46 -1.24 -9.21 16 17 C 0.04 0.56 5.10 -1.90 -0.01 0.55 16 18 C -0.13 -1.47 7.06 -24.87 -0.18 -1.65 16 19 C -0.13 -1.39 6.93 -25.37 -0.18 -1.56 16 20 C 0.03 0.42 6.70 -2.75 -0.02 0.40 16 21 H 0.19 3.66 7.80 -54.10 -0.42 3.23 16 22 H 0.10 2.50 6.42 -51.93 -0.33 2.16 16 23 H 0.03 0.72 7.98 -51.93 -0.41 0.31 16 24 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.04 0.67 7.95 -51.93 -0.41 0.26 16 26 H 0.05 0.94 8.03 -51.93 -0.42 0.53 16 27 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.06 1.26 5.86 -51.93 -0.30 0.96 16 29 H 0.03 0.41 7.81 -51.93 -0.41 0.00 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.09 1.42 7.66 -51.93 -0.40 1.02 16 32 H 0.04 0.64 8.00 -51.93 -0.42 0.22 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.04 0.48 7.57 -51.93 -0.39 0.09 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 307.92 15.07 4.64 4.64 Total: -1.00 -29.38 307.92 -8.62 -38.01 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.42 Total: 1.00 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -0.65 Total: -11.23 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -1.16 Total: -49.07 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.38 -8.62 -38.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281531898.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.824 kcal (2) G-P(sol) polarization free energy of solvation -29.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds