Wall clock time and date at job start Sun Mar 29 2020 21:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47418 * 56.61060 * 3 2 1 5 5 C 1.36929 * 119.99999 * 264.23093 * 4 3 2 6 6 H 1.08004 * 120.00219 * 196.87388 * 5 4 3 7 7 C 1.38811 * 120.00262 * 16.86675 * 5 4 3 8 8 N 1.31622 * 120.00003 * 22.14743 * 7 5 4 9 9 Si 1.86800 * 120.00109 * 202.14958 * 7 5 4 10 10 H 1.48504 * 109.47197 * 59.99943 * 9 7 5 11 11 H 1.48504 * 109.46978 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47083 * 299.99583 * 9 7 5 13 13 C 1.46500 * 119.99840 * 84.22262 * 4 3 2 14 14 C 1.53002 * 109.47464 * 270.00397 * 13 4 3 15 15 C 1.52999 * 109.47158 * 180.02562 * 14 13 4 16 16 N 1.46905 * 109.47028 * 180.02562 * 15 14 13 17 17 C 1.48533 * 111.00349 * 52.59763 * 16 15 14 18 18 C 1.54930 * 103.22935 * 159.72134 * 17 16 15 19 19 C 1.54602 * 102.92141 * 322.58969 * 18 17 16 20 20 C 1.47903 * 111.00027 * 169.99881 * 16 15 14 21 21 H 4.40647 * 5.51421 * 179.97438 * 4 1 2 22 22 H 1.08993 * 109.47402 * 296.61057 * 3 2 1 23 23 H 1.09005 * 109.46706 * 176.60605 * 3 2 1 24 24 H 0.96999 * 120.00041 * 180.02562 * 8 7 5 25 25 H 1.09004 * 109.47445 * 30.00072 * 13 4 3 26 26 H 1.09005 * 109.46818 * 150.00143 * 13 4 3 27 27 H 1.09004 * 109.46956 * 299.99921 * 14 13 4 28 28 H 1.08996 * 109.47160 * 60.00238 * 14 13 4 29 29 H 1.09004 * 109.46755 * 299.99594 * 15 14 13 30 30 H 1.08996 * 109.47258 * 59.99848 * 15 14 13 31 31 H 1.09000 * 110.66988 * 278.16399 * 17 16 15 32 32 H 1.09004 * 110.66266 * 41.28707 * 17 16 15 33 33 H 1.08998 * 110.72867 * 204.22948 * 18 17 16 34 34 H 1.09001 * 110.72320 * 80.94266 * 18 17 16 35 35 H 1.09003 * 110.30465 * 263.03888 * 19 18 17 36 36 H 1.09003 * 110.31000 * 140.87104 * 19 18 17 37 37 H 1.08997 * 109.91168 * 333.50577 * 20 16 15 38 38 H 1.08992 * 109.91586 * 94.60133 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.7592 -1.1532 5 6 3.4760 -2.0775 -1.0097 6 1 4.0812 -2.5636 -1.7607 7 6 3.0442 -2.7893 0.1010 8 7 1.9904 -2.3808 0.7756 9 14 3.9586 -4.3270 0.6384 10 1 5.3660 -3.9789 0.9603 11 1 3.3026 -4.8977 1.8423 12 1 3.9345 -5.3264 -0.4596 13 6 3.2583 -0.1087 -2.4601 14 6 1.9483 -0.2672 -3.2346 15 6 2.0776 0.4116 -4.5996 16 7 0.8197 0.2599 -5.3430 17 6 -0.3367 0.7203 -4.5324 18 6 -1.4312 0.9876 -5.5958 19 6 -0.6284 1.5798 -6.7769 20 6 0.8187 1.1000 -6.5603 21 1 -1.0499 -0.0003 -0.0001 22 1 3.0096 -0.4595 0.9187 23 1 3.0088 1.0268 -0.0608 24 1 1.6889 -2.8779 1.5520 25 1 3.4713 0.9511 -2.3197 26 1 4.0704 -0.5714 -3.0209 27 1 1.7353 -1.3270 -3.3750 28 1 1.1363 0.1955 -2.6738 29 1 2.2909 1.4714 -4.4596 30 1 2.8895 -0.0514 -5.1603 31 1 -0.6553 -0.0585 -3.8396 32 1 -0.0898 1.6364 -3.9957 33 1 -2.1609 1.7078 -5.2258 34 1 -1.9194 0.0582 -5.8889 35 1 -0.6730 2.6687 -6.7564 36 1 -1.0144 1.2022 -7.7238 37 1 1.4772 1.9572 -6.4203 38 1 1.1506 0.5131 -7.4167 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281531898.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:11 Heat of formation + Delta-G solvation = 62.688233 kcal Electronic energy + Delta-G solvation = -16932.117286 eV Core-core repulsion = 14390.070445 eV Total energy + Delta-G solvation = -2542.046841 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.93511 -38.09504 -34.89878 -33.44902 -32.80208 -30.60333 -29.68974 -27.94559 -26.46517 -23.92509 -22.47058 -21.64469 -21.09368 -19.33610 -18.26431 -17.13660 -16.94866 -16.49330 -16.04895 -15.49577 -15.14210 -15.02744 -14.69819 -13.93000 -13.77336 -13.39132 -13.26681 -13.11258 -12.71390 -12.63405 -12.32936 -12.25595 -12.21952 -12.04989 -12.00259 -11.81453 -11.50103 -11.34969 -10.73807 -10.65468 -10.28179 -9.34300 -8.92486 -7.81853 -5.22247 1.48663 1.50854 1.57231 2.35166 2.53954 2.61926 3.07738 3.30720 3.69735 3.79094 3.89079 4.07680 4.12029 4.18885 4.35031 4.41454 4.58299 4.65066 4.67324 4.75709 4.84199 4.90407 4.92666 4.97528 4.99232 5.06653 5.17557 5.31536 5.32759 5.37452 5.52321 5.67962 5.69991 5.99785 6.15116 6.31926 7.12488 7.37259 7.86029 8.28147 9.20007 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.031952 B = 0.005950 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.108624 B = 4704.697698 C = 5015.375640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.123 4.123 3 C 0.267 3.733 4 N -0.601 5.601 5 C -0.268 4.268 6 H 0.073 0.927 7 C -0.047 4.047 8 N -0.915 5.915 9 Si 0.960 3.040 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.282 1.282 13 C 0.148 3.852 14 C -0.119 4.119 15 C 0.061 3.939 16 N -0.539 5.539 17 C 0.036 3.964 18 C -0.121 4.121 19 C -0.124 4.124 20 C 0.031 3.969 21 H 0.217 0.783 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.246 0.754 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.028 0.972 28 H 0.043 0.957 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.039 0.961 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.971 9.541 -11.756 15.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 C -0.126 4.126 3 C 0.142 3.858 4 N -0.321 5.321 5 C -0.398 4.398 6 H 0.091 0.909 7 C -0.243 4.243 8 N -0.560 5.560 9 Si 0.789 3.211 10 H -0.203 1.203 11 H -0.225 1.225 12 H -0.209 1.209 13 C 0.022 3.978 14 C -0.160 4.160 15 C -0.068 4.068 16 N -0.263 5.263 17 C -0.092 4.092 18 C -0.159 4.159 19 C -0.162 4.162 20 C -0.097 4.097 21 H 0.234 0.766 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.998 8.908 -11.762 15.056 hybrid contribution 0.020 -0.494 0.927 1.051 sum -2.978 8.414 -10.835 14.038 Atomic orbital electron populations 1.24889 0.96265 1.06781 1.04003 1.24661 0.96045 0.94879 0.97037 1.17777 0.82940 0.93416 0.91682 1.44364 1.74770 1.08406 1.04530 1.19447 1.25519 0.88056 1.06749 0.90897 1.25551 0.97284 1.00912 1.00596 1.70287 1.22835 1.41934 1.20979 0.85452 0.78638 0.79914 0.77072 1.20318 1.22463 1.20857 1.21012 0.95068 0.96413 0.85316 1.22051 1.00050 0.99061 0.94805 1.22191 0.92195 0.98536 0.93880 1.64769 1.03105 1.52216 1.06232 1.23137 0.91718 0.98035 0.96283 1.22492 0.96940 1.01503 0.94948 1.22394 0.93614 1.01012 0.99164 1.22969 0.97912 0.95484 0.93327 0.76604 0.91318 0.91852 0.94475 0.92156 0.92806 0.95272 0.93847 0.94061 0.90463 0.92554 0.94264 0.89684 0.91175 0.90257 0.89748 0.93350 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.74 19.25 74.32 1.43 -12.31 16 2 C -0.12 -6.07 10.54 31.13 0.33 -5.74 16 3 C 0.27 12.88 5.45 84.57 0.46 13.34 16 4 N -0.60 -29.61 2.50 -712.54 -1.78 -31.39 16 5 C -0.27 -14.60 9.66 84.03 0.81 -13.78 16 6 H 0.07 3.90 7.90 -2.91 -0.02 3.88 16 7 C -0.05 -2.63 4.85 84.86 0.41 -2.22 16 8 N -0.92 -53.44 9.50 21.65 0.21 -53.23 16 9 Si 0.96 45.16 29.61 68.60 2.03 47.19 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 C 0.15 5.94 5.70 86.38 0.49 6.43 16 14 C -0.12 -4.67 5.05 30.59 0.15 -4.52 16 15 C 0.06 1.86 5.03 86.30 0.43 2.30 16 16 N -0.54 -15.92 5.40 -883.03 -4.76 -20.69 16 17 C 0.04 1.04 5.10 86.65 0.44 1.48 16 18 C -0.12 -2.60 7.06 31.80 0.22 -2.38 16 19 C -0.12 -2.25 6.93 31.47 0.22 -2.03 16 20 C 0.03 0.68 6.70 86.45 0.58 1.26 16 21 H 0.22 8.17 7.80 -4.42 -0.03 8.13 16 22 H 0.07 3.67 6.42 -2.39 -0.02 3.65 16 23 H 0.06 2.61 7.98 -2.38 -0.02 2.60 16 24 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 25 H 0.06 2.13 7.95 -2.39 -0.02 2.11 16 26 H 0.05 2.08 8.03 -2.38 -0.02 2.06 16 27 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.04 1.83 5.86 -2.39 -0.01 1.82 16 29 H 0.04 1.16 7.81 -2.38 -0.02 1.14 16 30 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.06 1.92 7.66 -2.39 -0.02 1.90 16 32 H 0.04 1.14 8.00 -2.38 -0.02 1.12 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.05 1.00 7.57 -2.39 -0.02 0.99 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -63.14 307.92 2.67 -60.47 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 1.00 Total: 15.81 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 5.99 Total: -18.16 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -6.34 Total: -105.31 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -63.14 2.67 -60.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281531898.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.160 kcal (2) G-P(sol) polarization free energy of solvation -63.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds