Wall clock time and date at job start Sun Mar 29 2020 22:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47124 * 328.99729 * 3 2 1 5 5 C 1.36903 * 119.99870 * 97.45090 * 4 3 2 6 6 H 1.08007 * 119.99983 * 157.85816 * 5 4 3 7 7 C 1.39023 * 120.00595 * 337.86782 * 5 4 3 8 8 N 1.31389 * 119.99347 * 356.97675 * 7 5 4 9 9 Si 1.86792 * 120.00590 * 176.98586 * 7 5 4 10 10 H 1.48505 * 109.47056 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47456 * 119.99593 * 9 7 5 12 12 H 1.48502 * 109.47032 * 239.99623 * 9 7 5 13 13 C 1.34774 * 120.00188 * 277.45834 * 4 3 2 14 14 O 1.21597 * 120.00206 * 176.27438 * 13 4 3 15 15 C 1.47646 * 120.00056 * 356.54368 * 13 4 3 16 16 C 1.39414 * 124.13027 * 187.72826 * 15 13 4 17 17 N 1.30079 * 112.13781 * 179.78001 * 16 15 13 18 18 S 1.55916 * 108.77156 * 0.46547 * 17 16 15 19 19 N 1.31541 * 124.12448 * 8.02139 * 15 13 4 20 20 H 4.40640 * 5.51393 * 180.02562 * 4 1 2 21 21 H 1.09002 * 109.47132 * 208.99986 * 3 2 1 22 22 H 1.08995 * 109.46829 * 88.99973 * 3 2 1 23 23 H 0.96997 * 119.99319 * 180.02562 * 8 7 5 24 24 H 1.08000 * 123.92529 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1830 0.7114 5 6 3.5085 -2.2976 0.0098 6 1 4.1827 -3.0148 0.4543 7 6 3.0203 -2.5063 -1.2751 8 7 2.1543 -1.6651 -1.7934 9 14 3.5952 -3.9827 -2.2644 10 1 4.5647 -4.7700 -1.4608 11 1 2.4279 -4.8347 -2.6062 12 1 4.2506 -3.5171 -3.5130 13 6 3.2167 -1.1748 2.0567 14 8 3.5577 -2.1791 2.6512 15 6 2.8864 0.0521 2.8088 16 6 3.0874 0.2070 4.1797 17 7 2.7190 1.3819 4.5994 18 16 2.1662 2.1961 3.3901 19 7 2.3616 1.1303 2.2683 20 1 -1.0498 -0.0004 0.0000 21 1 3.0090 0.8997 0.4982 22 1 3.0093 -0.0171 -1.0275 23 1 1.8134 -1.8110 -2.6897 24 1 3.5035 -0.5581 4.8182 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281538380.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:43 Heat of formation + Delta-G solvation = 108.717724 kcal Electronic energy + Delta-G solvation = -14404.660243 eV Core-core repulsion = 11834.437067 eV Total energy + Delta-G solvation = -2570.223176 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.031 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.48495 -38.08939 -35.29374 -33.18634 -31.91609 -31.22216 -27.06670 -26.41402 -24.73218 -22.16397 -19.47221 -18.82188 -17.87067 -16.86699 -16.11864 -15.40535 -15.22125 -14.55747 -14.09722 -13.85852 -12.91197 -12.59954 -12.34018 -11.68363 -11.55515 -11.18127 -10.82302 -10.80570 -10.58460 -10.43861 -10.10322 -9.47100 -9.28552 -8.84614 -8.67306 -8.59923 -7.97477 -6.47120 -4.06725 0.95614 1.93718 2.16415 2.17395 3.09435 3.17225 3.23317 3.75537 4.00256 4.11820 4.29404 4.67053 4.99036 5.21361 5.59416 5.69771 5.83004 5.90421 6.65292 6.92284 6.97108 7.15715 7.35715 7.87944 8.26138 8.91028 8.93185 9.12743 9.70351 10.47224 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.039499 B = 0.008795 C = 0.007552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.701081 B = 3182.864178 C = 3706.603758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.079 4.079 3 C 0.219 3.781 4 N -0.402 5.402 5 C -0.299 4.299 6 H 0.110 0.890 7 C 0.031 3.969 8 N -0.856 5.856 9 Si 0.937 3.063 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.506 3.494 14 O -0.577 6.577 15 C 0.047 3.953 16 C 0.078 3.922 17 N -0.580 5.580 18 S 0.623 5.377 19 N -0.534 5.534 20 H 0.196 0.804 21 H 0.087 0.913 22 H 0.122 0.878 23 H 0.273 0.727 24 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.169 6.922 3.303 7.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 C -0.081 4.081 3 C 0.096 3.904 4 N -0.118 5.118 5 C -0.428 4.428 6 H 0.128 0.872 7 C -0.174 4.174 8 N -0.494 5.494 9 Si 0.763 3.237 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.291 3.709 14 O -0.461 6.461 15 C -0.128 4.128 16 C -0.119 4.119 17 N -0.420 5.420 18 S 0.667 5.333 19 N -0.381 5.381 20 H 0.213 0.787 21 H 0.105 0.895 22 H 0.140 0.860 23 H 0.084 0.916 24 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.857 8.463 3.357 9.145 hybrid contribution 0.370 -2.328 -0.533 2.417 sum -0.487 6.135 2.824 6.771 Atomic orbital electron populations 1.24163 0.95317 1.04647 1.06542 1.22933 0.94002 0.96131 0.95013 1.18892 0.84668 0.87001 0.99851 1.43631 1.51620 1.13187 1.03324 1.19934 1.25793 1.00429 0.96676 0.87248 1.25548 0.95158 0.98958 0.97776 1.70002 1.27284 1.35322 1.16769 0.85685 0.78707 0.80338 0.78994 1.18888 1.20454 1.20404 1.16625 0.87189 0.84893 0.82227 1.90650 1.54872 1.32791 1.67806 1.23067 1.01495 0.94842 0.93384 1.23749 1.00423 0.93908 0.93810 1.72205 1.21089 1.11557 1.37188 1.78922 1.45831 1.24448 0.84104 1.73408 1.21597 1.08144 1.34990 0.78720 0.89539 0.86012 0.91592 0.77632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.29 19.25 29.55 0.57 -5.72 14 2 C -0.08 -1.86 10.48 -37.12 -0.39 -2.25 14 3 C 0.22 5.09 4.75 -6.83 -0.03 5.06 14 4 N -0.40 -10.23 2.61 -119.08 -0.31 -10.54 14 5 C -0.30 -7.93 9.31 -15.00 -0.14 -8.07 14 6 H 0.11 2.97 7.41 -52.48 -0.39 2.58 14 7 C 0.03 0.78 5.26 -17.45 -0.09 0.69 14 8 N -0.86 -21.64 8.86 55.50 0.49 -21.15 14 9 Si 0.94 19.68 29.55 -169.99 -5.02 14.66 14 10 H -0.26 -5.55 7.11 56.52 0.40 -5.15 14 11 H -0.28 -5.92 7.11 56.52 0.40 -5.52 14 12 H -0.28 -5.68 7.11 56.52 0.40 -5.28 14 13 C 0.51 12.51 7.53 -12.42 -0.09 12.41 14 14 O -0.58 -15.50 16.53 5.28 0.09 -15.42 14 15 C 0.05 0.97 6.54 -83.71 -0.55 0.42 14 16 C 0.08 1.38 11.23 -17.86 -0.20 1.18 14 17 N -0.58 -9.58 11.41 19.45 0.22 -9.35 14 18 S 0.62 9.29 23.69 -107.50 -2.55 6.74 14 19 N -0.53 -10.10 6.83 23.21 0.16 -9.94 14 20 H 0.20 3.52 7.80 -54.10 -0.42 3.10 14 21 H 0.09 1.85 5.45 -51.93 -0.28 1.56 14 22 H 0.12 2.94 6.06 -51.93 -0.31 2.63 14 23 H 0.27 6.55 8.31 -40.82 -0.34 6.21 14 24 H 0.21 3.28 8.06 -52.49 -0.42 2.86 14 LS Contribution 238.22 15.07 3.59 3.59 Total: -1.00 -29.48 238.22 -5.22 -34.70 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -0.97 Total: 2.99 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -0.93 Total: 3.72 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 0.56 Total: -50.99 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.09 Total: -15.42 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 16 Polarization: 9.29 SS G_CDS: -2.55 Total: 6.74 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.48 -5.22 -34.70 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281538380.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.419 kcal (2) G-P(sol) polarization free energy of solvation -29.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds