Wall clock time and date at job start Sun Mar 29 2020 22:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47124 * 328.99729 * 3 2 1 5 5 C 1.36903 * 119.99870 * 97.45090 * 4 3 2 6 6 H 1.08007 * 119.99983 * 157.85816 * 5 4 3 7 7 C 1.39023 * 120.00595 * 337.86782 * 5 4 3 8 8 N 1.31389 * 119.99347 * 356.97675 * 7 5 4 9 9 Si 1.86792 * 120.00590 * 176.98586 * 7 5 4 10 10 H 1.48505 * 109.47056 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47456 * 119.99593 * 9 7 5 12 12 H 1.48502 * 109.47032 * 239.99623 * 9 7 5 13 13 C 1.34774 * 120.00188 * 277.45834 * 4 3 2 14 14 O 1.21597 * 120.00206 * 176.27438 * 13 4 3 15 15 C 1.47646 * 120.00056 * 356.54368 * 13 4 3 16 16 C 1.39414 * 124.13027 * 187.72826 * 15 13 4 17 17 N 1.30079 * 112.13781 * 179.78001 * 16 15 13 18 18 S 1.55916 * 108.77156 * 0.46547 * 17 16 15 19 19 N 1.31541 * 124.12448 * 8.02139 * 15 13 4 20 20 H 4.40640 * 5.51393 * 180.02562 * 4 1 2 21 21 H 1.09002 * 109.47132 * 208.99986 * 3 2 1 22 22 H 1.08995 * 109.46829 * 88.99973 * 3 2 1 23 23 H 0.96997 * 119.99319 * 180.02562 * 8 7 5 24 24 H 1.08000 * 123.92529 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1830 0.7114 5 6 3.5085 -2.2976 0.0098 6 1 4.1827 -3.0148 0.4543 7 6 3.0203 -2.5063 -1.2751 8 7 2.1543 -1.6651 -1.7934 9 14 3.5952 -3.9827 -2.2644 10 1 4.5647 -4.7700 -1.4608 11 1 2.4279 -4.8347 -2.6062 12 1 4.2506 -3.5171 -3.5130 13 6 3.2167 -1.1748 2.0567 14 8 3.5577 -2.1791 2.6512 15 6 2.8864 0.0521 2.8088 16 6 3.0874 0.2070 4.1797 17 7 2.7190 1.3819 4.5994 18 16 2.1662 2.1961 3.3901 19 7 2.3616 1.1303 2.2683 20 1 -1.0498 -0.0004 0.0000 21 1 3.0090 0.8997 0.4982 22 1 3.0093 -0.0171 -1.0275 23 1 1.8134 -1.8110 -2.6897 24 1 3.5035 -0.5581 4.8182 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281538380.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:43 Heat of formation + Delta-G solvation = 89.267018 kcal Electronic energy + Delta-G solvation = -14405.503689 eV Core-core repulsion = 11834.437067 eV Total energy + Delta-G solvation = -2571.066622 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.031 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.01390 -39.86815 -37.19228 -34.74110 -33.66838 -33.04122 -28.75915 -28.15686 -26.48749 -23.77378 -21.11781 -20.25484 -19.67231 -18.64459 -17.86971 -17.03519 -16.85571 -16.12941 -15.83473 -15.59154 -14.71145 -14.33236 -14.16555 -13.34673 -13.09186 -12.88101 -12.64207 -12.23171 -12.12560 -12.08164 -11.64883 -11.29940 -11.06028 -10.70022 -10.42808 -10.05715 -9.82389 -8.33838 -6.05134 -0.49319 0.53536 0.63866 0.82529 1.42498 1.44451 1.57837 2.01097 2.22713 2.35187 2.52347 3.01352 3.09071 3.66707 3.91472 4.06095 4.28054 4.54920 4.91641 5.12255 5.38455 5.46300 5.49535 5.98806 6.36534 7.00410 7.17607 7.26397 7.81551 8.59069 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.039499 B = 0.008795 C = 0.007552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.701081 B = 3182.864178 C = 3706.603758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.116 4.116 3 C 0.228 3.772 4 N -0.419 5.419 5 C -0.340 4.340 6 H 0.088 0.912 7 C 0.001 3.999 8 N -0.872 5.872 9 Si 1.000 3.000 10 H -0.269 1.269 11 H -0.278 1.278 12 H -0.264 1.264 13 C 0.501 3.499 14 O -0.612 6.612 15 C 0.020 3.980 16 C 0.078 3.922 17 N -0.587 5.587 18 S 0.745 5.255 19 N -0.559 5.559 20 H 0.229 0.771 21 H 0.103 0.897 22 H 0.105 0.895 23 H 0.276 0.724 24 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.101 8.417 3.650 9.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.117 4.117 3 C 0.105 3.895 4 N -0.134 5.134 5 C -0.469 4.469 6 H 0.106 0.894 7 C -0.203 4.203 8 N -0.509 5.509 9 Si 0.823 3.177 10 H -0.193 1.193 11 H -0.203 1.203 12 H -0.189 1.189 13 C 0.287 3.713 14 O -0.499 6.499 15 C -0.153 4.153 16 C -0.115 4.115 17 N -0.429 5.429 18 S 0.787 5.213 19 N -0.409 5.409 20 H 0.246 0.754 21 H 0.120 0.880 22 H 0.123 0.877 23 H 0.087 0.913 24 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -1.779 9.945 3.688 10.755 hybrid contribution 0.548 -2.518 -0.496 2.624 sum -1.231 7.428 3.192 8.177 Atomic orbital electron populations 1.25008 0.96274 1.03153 1.05039 1.23214 0.94602 0.97529 0.96404 1.18795 0.85011 0.86861 0.98824 1.43780 1.52259 1.13570 1.03805 1.19895 1.27504 1.01528 0.97955 0.89370 1.26255 0.94906 1.01192 0.97928 1.70102 1.27584 1.36174 1.17004 0.84775 0.78084 0.77126 0.77756 1.19346 1.20341 1.18901 1.17158 0.85899 0.86011 0.82240 1.90595 1.55981 1.34695 1.68620 1.22444 1.04428 0.94308 0.94070 1.23672 1.00474 0.94558 0.92761 1.72109 1.21428 1.11285 1.38119 1.78507 1.41001 1.20639 0.81110 1.72954 1.21197 1.08702 1.38062 0.75416 0.88002 0.87735 0.91344 0.76623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -11.59 19.25 74.32 1.43 -10.16 14 2 C -0.12 -5.38 10.48 31.12 0.33 -5.05 14 3 C 0.23 10.72 4.75 84.57 0.40 11.12 14 4 N -0.42 -21.97 2.61 -648.93 -1.69 -23.66 14 5 C -0.34 -18.79 9.31 84.09 0.78 -18.00 14 6 H 0.09 5.08 7.41 -2.91 -0.02 5.06 14 7 C 0.00 0.05 5.26 84.95 0.45 0.50 14 8 N -0.87 -44.49 8.86 21.68 0.19 -44.30 14 9 Si 1.00 40.92 29.55 68.60 2.03 42.95 14 10 H -0.27 -11.08 7.11 99.48 0.71 -10.37 14 11 H -0.28 -11.26 7.11 99.48 0.71 -10.55 14 12 H -0.26 -10.14 7.11 99.48 0.71 -9.43 14 13 C 0.50 25.42 7.53 86.73 0.65 26.07 14 14 O -0.61 -34.16 16.53 -4.02 -0.07 -34.23 14 15 C 0.02 0.80 6.54 41.96 0.27 1.07 14 16 C 0.08 2.67 11.23 85.24 0.96 3.63 14 17 N -0.59 -17.57 11.41 -92.37 -1.05 -18.62 14 18 S 0.74 19.45 23.69 -56.49 -1.34 18.11 14 19 N -0.56 -20.07 6.83 -80.48 -0.55 -20.62 14 20 H 0.23 7.54 7.80 -4.43 -0.03 7.51 14 21 H 0.10 4.34 5.45 -2.39 -0.01 4.33 14 22 H 0.11 5.19 6.06 -2.39 -0.01 5.18 14 23 H 0.28 13.24 8.31 -92.71 -0.77 12.47 14 24 H 0.22 6.71 8.06 -2.91 -0.02 6.68 14 Total: -1.00 -64.36 238.22 4.04 -60.32 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.24 Total: 10.87 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 5.27 Total: 9.18 kcal Atomic # 7 Polarization: -104.10 SS G_CDS: -3.10 Total: -107.20 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.07 Total: -34.23 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 16 Polarization: 19.45 SS G_CDS: -1.34 Total: 18.11 kcal Total: -64.36 4.04 -60.32 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281538380.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.590 kcal (2) G-P(sol) polarization free energy of solvation -64.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds