Wall clock time and date at job start Sun Mar 29 2020 22:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47082 * 271.34591 * 3 2 1 5 5 C 1.36844 * 119.99841 * 98.09615 * 4 3 2 6 6 H 1.07998 * 119.99608 * 156.66967 * 5 4 3 7 7 C 1.39055 * 120.00254 * 336.94746 * 5 4 3 8 8 N 1.31361 * 119.99774 * 357.44427 * 7 5 4 9 9 Si 1.86797 * 120.00153 * 177.43920 * 7 5 4 10 10 H 1.48497 * 109.47245 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47119 * 120.00397 * 9 7 5 12 12 H 1.48504 * 109.47220 * 240.00197 * 9 7 5 13 13 C 1.34780 * 120.00502 * 278.10174 * 4 3 2 14 14 O 1.21660 * 120.00102 * 175.49862 * 13 4 3 15 15 C 1.47034 * 119.99599 * 355.49272 * 13 4 3 16 16 C 1.38363 * 128.48283 * 186.81098 * 15 13 4 17 17 N 1.31220 * 111.86312 * 179.97438 * 16 15 13 18 18 N 1.27323 * 120.05767 * 0.02562 * 17 16 15 19 19 S 1.56648 * 109.75950 * 359.73475 * 18 17 16 20 20 H 4.40638 * 5.51304 * 179.97438 * 4 1 2 21 21 H 1.08997 * 109.46988 * 151.35360 * 3 2 1 22 22 H 1.08999 * 109.47211 * 31.34808 * 3 2 1 23 23 H 0.96994 * 120.00402 * 179.97438 * 8 7 5 24 24 H 1.08002 * 124.06459 * 359.97006 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 -0.0316 1.3808 5 6 3.5203 -1.2182 1.9425 6 1 4.2090 -1.2231 2.7744 7 6 3.0302 -2.4180 1.4386 8 7 2.1582 -2.4104 0.4562 9 14 3.6120 -4.0406 2.1584 10 1 4.5872 -3.7778 3.2470 11 1 2.4491 -4.7848 2.7052 12 1 4.2617 -4.8490 1.0956 13 6 3.2034 1.1075 2.0981 14 8 3.5306 1.0700 3.2692 15 6 2.8834 2.3953 1.4650 16 6 3.0178 3.6691 1.9884 17 7 2.6332 4.5904 1.1370 18 7 2.2007 4.2556 -0.0128 19 16 2.2368 2.6963 -0.1587 20 1 -1.0500 0.0002 -0.0001 21 1 3.0089 0.9027 -0.4927 22 1 3.0097 -0.8768 -0.5346 23 1 1.8165 -3.2472 0.1044 24 1 3.3941 3.8795 2.9787 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281566407.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:41 Heat of formation + Delta-G solvation = 98.077479 kcal Electronic energy + Delta-G solvation = -14329.603668 eV Core-core repulsion = 11758.919097 eV Total energy + Delta-G solvation = -2570.684571 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.031 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.63411 -40.55908 -37.28510 -34.36208 -33.23573 -32.77969 -28.97179 -28.39440 -26.53120 -23.82086 -21.06537 -20.24638 -19.85945 -18.66947 -17.95810 -17.09007 -16.76839 -16.24792 -15.87502 -15.63888 -14.98062 -14.40888 -14.30989 -13.55042 -13.42791 -12.92724 -12.87128 -12.69555 -12.11131 -11.54217 -11.25374 -11.10708 -10.92920 -10.87481 -10.73113 -10.36304 -9.97200 -8.44061 -6.09835 -1.18930 -0.08559 0.64038 1.01753 1.43073 1.46170 1.57939 1.85229 2.07815 2.28053 2.30914 2.84517 2.99535 3.18867 3.60282 3.86517 3.89761 4.38485 4.71124 4.92471 5.31107 5.33454 5.86369 6.24753 6.73499 6.92333 6.99143 7.11015 7.68333 8.50987 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.038609 B = 0.009269 C = 0.007900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.038626 B = 3020.162324 C = 3543.550577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.168 4.168 3 C 0.220 3.780 4 N -0.421 5.421 5 C -0.331 4.331 6 H 0.090 0.910 7 C 0.007 3.993 8 N -0.863 5.863 9 Si 0.999 3.001 10 H -0.272 1.272 11 H -0.277 1.277 12 H -0.262 1.262 13 C 0.500 3.500 14 O -0.609 6.609 15 C -0.272 4.272 16 C 0.041 3.959 17 N -0.266 5.266 18 N -0.330 5.330 19 S 0.474 5.526 20 H 0.239 0.761 21 H 0.076 0.924 22 H 0.135 0.865 23 H 0.283 0.717 24 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.211 1.765 -4.966 5.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.170 4.170 3 C 0.096 3.904 4 N -0.137 5.137 5 C -0.460 4.460 6 H 0.108 0.892 7 C -0.198 4.198 8 N -0.499 5.499 9 Si 0.822 3.178 10 H -0.196 1.196 11 H -0.203 1.203 12 H -0.187 1.187 13 C 0.290 3.710 14 O -0.497 6.497 15 C -0.412 4.412 16 C -0.126 4.126 17 N -0.130 5.130 18 N -0.308 5.308 19 S 0.611 5.389 20 H 0.256 0.744 21 H 0.092 0.908 22 H 0.152 0.848 23 H 0.093 0.907 24 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -1.826 2.515 -6.222 6.955 hybrid contribution 0.531 -1.147 1.797 2.197 sum -1.295 1.367 -4.424 4.808 Atomic orbital electron populations 1.25268 0.96338 1.03361 0.98682 1.22980 0.94490 0.98125 1.01442 1.18803 0.85644 1.02217 0.83779 1.43824 1.52565 1.06331 1.10952 1.19905 1.26196 0.82493 1.17387 0.89199 1.26210 0.94762 1.02484 0.96334 1.69950 1.26609 1.29506 1.23871 0.84777 0.78146 0.76403 0.78508 1.19625 1.20264 1.18665 1.16781 0.85983 0.82462 0.85808 1.90632 1.56004 1.86386 1.16666 1.28124 1.11839 0.99672 1.01577 1.24508 1.00181 0.85509 1.02389 1.70747 1.12604 1.32383 0.97225 1.78344 1.21511 1.15457 1.15530 1.82936 1.43824 1.01792 1.10313 0.74416 0.90767 0.84791 0.90663 0.76083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.64 19.25 74.32 1.43 -6.21 14 2 C -0.17 -6.65 9.71 31.13 0.30 -6.34 14 3 C 0.22 8.97 4.73 84.57 0.40 9.38 14 4 N -0.42 -20.24 2.61 -649.60 -1.69 -21.93 14 5 C -0.33 -16.91 9.28 84.11 0.78 -16.13 14 6 H 0.09 4.87 7.44 -2.91 -0.02 4.85 14 7 C 0.01 0.35 5.26 84.96 0.45 0.79 14 8 N -0.86 -39.48 8.90 21.68 0.19 -39.28 14 9 Si 1.00 37.80 29.55 68.60 2.03 39.83 14 10 H -0.27 -10.55 7.11 99.48 0.71 -9.84 14 11 H -0.28 -10.45 7.11 99.48 0.71 -9.74 14 12 H -0.26 -9.26 7.11 99.48 0.71 -8.55 14 13 C 0.50 24.17 7.51 86.55 0.65 24.82 14 14 O -0.61 -33.40 16.72 -4.22 -0.07 -33.47 14 15 C -0.27 -10.80 6.48 24.61 0.16 -10.64 14 16 C 0.04 1.49 11.56 84.81 0.98 2.47 14 17 N -0.27 -9.62 11.54 -57.80 -0.67 -10.28 14 18 N -0.33 -11.58 12.51 37.02 0.46 -11.12 14 19 S 0.47 15.65 17.63 -56.49 -1.00 14.66 14 20 H 0.24 6.24 7.80 -4.42 -0.03 6.20 14 21 H 0.08 2.63 4.40 -20.26 -0.09 2.54 14 22 H 0.13 5.69 6.07 -2.39 -0.01 5.68 14 23 H 0.28 12.08 8.31 -92.71 -0.77 11.31 14 24 H 0.22 7.01 8.06 -2.91 -0.02 6.98 14 Total: -1.00 -59.60 236.63 5.57 -54.03 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 1.17 Total: 9.43 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 5.15 Total: -1.85 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -1.70 Total: -82.62 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -0.07 Total: -33.47 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Atomic # 16 Polarization: 15.65 SS G_CDS: -1.00 Total: 14.66 kcal Total: -59.60 5.57 -54.03 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281566407.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.103 kcal (2) G-P(sol) polarization free energy of solvation -59.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds