Wall clock time and date at job start Sun Mar 29 2020 22:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29428 * 121.49628 * 2 1 4 4 S 1.69453 * 108.06115 * 180.23838 * 3 2 1 5 5 C 1.72016 * 96.09829 * 359.73888 * 4 3 2 6 6 N 1.38190 * 127.35653 * 179.97438 * 5 4 3 7 7 C 1.46497 * 120.00394 * 0.02562 * 6 5 4 8 8 C 1.52992 * 109.47373 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47438 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99632 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00020 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00235 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99635 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47535 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46785 * 120.00143 * 13 11 9 16 16 H 1.48500 * 109.47361 * 240.00073 * 13 11 9 17 17 C 1.39003 * 105.28124 * 0.02562 * 5 4 3 18 18 C 1.43205 * 123.22651 * 179.97438 * 17 5 4 19 19 N 3.52965 * 84.00483 * 179.76807 * 2 1 3 20 20 H 1.09010 * 109.47231 * 270.23154 * 1 2 3 21 21 H 1.08997 * 109.47063 * 30.22730 * 1 2 3 22 22 H 1.08998 * 109.47451 * 150.23029 * 1 2 3 23 23 H 0.97003 * 119.99714 * 180.02562 * 6 5 4 24 24 H 1.09000 * 109.47202 * 300.00395 * 7 6 5 25 25 H 1.09010 * 109.46738 * 59.99657 * 7 6 5 26 26 H 1.09003 * 109.47239 * 299.99821 * 8 7 6 27 27 H 1.09002 * 109.47334 * 59.99998 * 8 7 6 28 28 H 0.96999 * 119.99799 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1832 1.1036 0.0000 4 16 3.8313 0.7099 -0.0067 5 6 3.6117 -0.9962 -0.0018 6 7 4.5941 -1.9681 -0.0047 7 6 6.0071 -1.5815 -0.0121 8 6 6.8797 -2.8381 -0.0132 9 6 8.3333 -2.4404 -0.0202 10 1 8.6073 -1.3957 -0.0239 11 6 9.3134 -3.4102 -0.0229 12 7 8.9798 -4.6822 -0.0189 13 14 11.1151 -2.9171 -0.0323 14 1 11.2230 -1.4360 -0.0351 15 1 11.7830 -3.4593 1.1782 16 1 11.7717 -3.4639 -1.2468 17 6 2.2350 -1.1883 0.0043 18 6 1.6234 -2.4832 0.0093 19 7 1.1383 -3.5103 0.0142 20 1 -0.3634 0.0042 1.0277 21 1 -0.3633 0.8879 -0.5173 22 1 -0.3634 -0.8920 -0.5102 23 1 4.3480 -2.9064 -0.0017 24 1 6.2177 -0.9916 -0.9041 25 1 6.2260 -0.9882 0.8758 26 1 6.6690 -3.4276 0.8792 27 1 6.6608 -3.4317 -0.9008 28 1 9.6693 -5.3644 -0.0211 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286765961.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:08 Heat of formation + Delta-G solvation = 45.913533 kcal Electronic energy + Delta-G solvation = -13493.721605 eV Core-core repulsion = 11056.608130 eV Total energy + Delta-G solvation = -2437.113475 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.063 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.37406 -36.73474 -36.00352 -33.41507 -31.19726 -29.68424 -28.83883 -24.96644 -23.42552 -21.64945 -20.49362 -18.75549 -17.33780 -16.60346 -15.55113 -15.31837 -14.76318 -14.42956 -14.30047 -13.65159 -13.16853 -12.83130 -12.76669 -12.46739 -12.40747 -12.36619 -11.55705 -11.48037 -11.07750 -10.98572 -10.78162 -10.40333 -10.18543 -9.88097 -9.49738 -8.61620 -8.56907 -7.77978 -6.25283 -4.30737 0.93106 1.15213 1.89172 1.94122 2.87131 3.18609 3.20026 3.27854 3.32008 3.58648 4.28146 4.32278 4.66043 5.12255 5.21074 5.30608 5.42338 5.47068 5.71490 5.81639 5.97228 6.28052 6.62472 6.78133 7.28884 7.30667 7.32151 7.70328 7.73735 8.04405 8.74595 9.35773 10.86094 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.040819 B = 0.005122 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.785451 B = 5465.148992 C = 6125.179222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.204 3.796 3 N -0.502 5.502 4 S 0.270 5.730 5 C 0.182 3.818 6 N -0.655 5.655 7 C 0.104 3.896 8 C 0.013 3.987 9 C -0.528 4.528 10 H 0.063 0.937 11 C 0.061 3.939 12 N -0.890 5.890 13 Si 0.899 3.101 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.263 4.263 18 C 0.295 3.705 19 N -0.445 5.445 20 H 0.085 0.915 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.412 0.588 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.111 9.520 0.033 14.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.025 3.975 3 N -0.323 5.323 4 S 0.413 5.587 5 C -0.065 4.065 6 N -0.278 5.278 7 C -0.017 4.017 8 C -0.025 4.025 9 C -0.567 4.567 10 H 0.081 0.919 11 C -0.142 4.142 12 N -0.528 5.528 13 Si 0.727 3.273 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.289 4.289 18 C -0.020 4.020 19 N -0.124 5.124 20 H 0.104 0.896 21 H 0.102 0.898 22 H 0.095 0.905 23 H 0.250 0.750 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.660 9.833 0.035 14.503 hybrid contribution 0.370 -1.630 0.009 1.671 sum -10.290 8.204 0.044 13.160 Atomic orbital electron populations 1.20609 0.86750 1.03845 1.03787 1.20682 0.98008 0.86561 0.92253 1.76356 0.98983 1.24480 1.32462 1.84375 1.10914 0.90367 1.73027 1.23562 0.91402 0.99248 0.92268 1.44902 1.05181 1.06824 1.70884 1.22358 0.75688 1.02128 1.01568 1.19326 0.93961 0.90675 0.98505 1.20973 0.89855 0.93330 1.52501 0.91909 1.25009 0.99691 0.94843 0.94642 1.69957 1.33703 0.99634 1.49489 0.86415 0.84268 0.78872 0.77779 1.19457 1.20824 1.20819 1.15621 0.89234 0.89013 1.35020 1.24545 0.93563 0.91654 0.92250 1.81253 1.07808 1.10486 1.12824 0.89603 0.89773 0.90491 0.75043 0.91140 0.91144 0.95503 0.95502 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 9.95 36.01 0.36 -0.46 15 2 C 0.20 2.57 6.75 -83.19 -0.56 2.01 15 3 N -0.50 -6.77 11.95 32.62 0.39 -6.38 15 4 S 0.27 3.54 23.03 -107.50 -2.48 1.06 15 5 C 0.18 2.60 7.30 -14.40 -0.11 2.49 15 6 N -0.65 -10.10 5.69 -59.78 -0.34 -10.44 15 7 C 0.10 1.80 5.65 -4.05 -0.02 1.78 15 8 C 0.01 0.29 5.09 -27.88 -0.14 0.15 15 9 C -0.53 -13.43 9.11 -34.44 -0.31 -13.75 15 10 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 12 N -0.89 -25.01 13.29 55.43 0.74 -24.27 15 13 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 15 14 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 16 H -0.28 -6.34 7.11 56.52 0.40 -5.93 15 17 C -0.26 -3.65 5.76 -107.27 -0.62 -4.27 15 18 C 0.30 4.41 14.06 -22.47 -0.32 4.09 15 19 N -0.45 -7.35 18.54 41.83 0.78 -6.58 15 20 H 0.09 0.69 8.14 -51.92 -0.42 0.27 15 21 H 0.08 0.68 8.14 -51.93 -0.42 0.25 15 22 H 0.08 0.70 7.39 -51.93 -0.38 0.31 15 23 H 0.41 6.39 8.19 -40.82 -0.33 6.06 15 24 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 25 H 0.07 1.17 8.14 -51.92 -0.42 0.75 15 26 H 0.03 0.65 8.14 -51.93 -0.42 0.22 15 27 H 0.03 0.65 8.14 -51.93 -0.42 0.22 15 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 LS Contribution 272.96 15.07 4.11 4.11 Total: -1.00 -28.04 272.96 -6.43 -34.47 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -2.80 Total: -0.73 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -1.82 Total: -6.45 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 1.56 Total: -47.67 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -2.48 Total: 1.06 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.04 -6.43 -34.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286765961.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.383 kcal (2) G-P(sol) polarization free energy of solvation -28.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds