Wall clock time and date at job start Sun Mar 29 2020 22:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00012 * 2 1 4 4 H 1.48505 * 109.46782 * 269.99621 * 3 2 1 5 5 H 1.48493 * 109.47457 * 29.99687 * 3 2 1 6 6 H 1.48500 * 109.47000 * 149.99994 * 3 2 1 7 7 C 1.37876 * 119.99625 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00074 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99689 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.46617 * 180.02562 * 9 7 2 11 11 C 1.48055 * 111.00196 * 75.00324 * 10 9 7 12 12 C 1.51175 * 105.67292 * 146.95386 * 11 10 9 13 13 C 1.38199 * 131.76495 * 162.49158 * 12 11 10 14 14 C 1.38227 * 120.05749 * 180.02562 * 13 12 11 15 15 C 1.38239 * 120.01637 * 359.97438 * 14 13 12 16 16 C 1.38342 * 119.98819 * 0.02562 * 15 14 13 17 17 Cl 1.73597 * 120.00116 * 179.97438 * 16 15 14 18 18 C 1.38144 * 120.05923 * 0.04102 * 16 15 14 19 19 C 1.48060 * 110.99381 * 189.99997 * 10 9 7 20 20 H 0.97003 * 119.99755 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46843 * 59.99993 * 9 7 2 22 22 H 1.08998 * 109.46787 * 299.99952 * 9 7 2 23 23 H 1.08999 * 110.20047 * 266.00336 * 11 10 9 24 24 H 1.08999 * 110.20884 * 27.81955 * 11 10 9 25 25 H 1.08001 * 119.97257 * 359.97438 * 13 12 11 26 26 H 1.07993 * 119.99607 * 180.02562 * 14 13 12 27 27 H 1.07996 * 120.01040 * 180.02562 * 15 14 13 28 28 H 1.09002 * 110.21037 * 332.09359 * 19 10 9 29 29 H 1.08995 * 110.20926 * 93.91199 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 4.0011 -2.5791 0.0001 11 6 3.8402 -3.1989 -1.3348 12 6 5.0050 -4.1506 -1.4864 13 6 5.2215 -5.2111 -2.3456 14 6 6.3983 -5.9325 -2.2722 15 6 7.3603 -5.5934 -1.3392 16 6 7.1449 -4.5321 -0.4784 17 17 8.3525 -4.1063 0.6938 18 6 5.9687 -3.8110 -0.5497 19 6 5.4615 -2.6256 0.2396 20 1 -0.4850 0.8401 -0.0004 21 1 3.8752 -0.6797 0.8894 22 1 3.8745 -0.6809 -0.8905 23 1 2.8985 -3.7455 -1.3850 24 1 3.8733 -2.4347 -2.1113 25 1 4.4702 -5.4769 -3.0746 26 1 6.5666 -6.7608 -2.9445 27 1 8.2798 -6.1569 -1.2822 28 1 5.9306 -1.7078 -0.1150 29 1 5.6647 -2.7658 1.3012 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287467071.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:06 Heat of formation + Delta-G solvation = 31.932054 kcal Electronic energy + Delta-G solvation = -14114.793382 eV Core-core repulsion = 11642.737166 eV Total energy + Delta-G solvation = -2472.056215 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.16723 -36.95684 -36.19520 -32.86987 -31.10286 -30.97481 -27.50548 -27.18214 -23.65743 -21.42532 -21.27180 -20.45190 -16.88645 -16.51969 -15.70563 -15.35139 -15.07465 -14.22476 -13.83330 -13.61073 -13.08156 -12.80243 -12.62193 -12.25330 -12.18590 -11.53731 -11.49065 -11.19893 -11.01972 -10.75223 -10.69767 -10.40626 -9.88385 -9.40641 -8.78840 -8.62933 -8.59757 -7.61940 -6.09802 -4.08230 1.19136 1.27326 2.17202 3.24703 3.33113 3.34370 3.62503 4.37438 4.47533 4.64900 4.76797 4.96996 5.22120 5.28918 5.38804 5.57135 5.70719 5.87082 6.03335 6.05132 6.18905 6.25006 6.35380 6.61849 6.63739 6.72263 6.81508 7.40762 7.70276 7.74053 8.56597 8.99308 9.50855 11.03212 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.036349 B = 0.006350 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.129507 B = 4408.422688 C = 4975.942116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.511 4.511 8 H 0.082 0.918 9 C 0.151 3.849 10 N -0.488 5.488 11 C 0.084 3.916 12 C -0.079 4.079 13 C -0.101 4.101 14 C -0.110 4.110 15 C -0.119 4.119 16 C -0.017 4.017 17 Cl -0.078 7.078 18 C -0.090 4.090 19 C 0.071 3.929 20 H 0.264 0.736 21 H 0.034 0.966 22 H -0.008 1.008 23 H 0.094 0.906 24 H 0.065 0.935 25 H 0.129 0.871 26 H 0.132 0.868 27 H 0.132 0.868 28 H 0.058 0.942 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.897 -9.320 -3.939 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.549 4.549 8 H 0.100 0.900 9 C 0.024 3.976 10 N -0.211 5.211 11 C -0.044 4.044 12 C -0.080 4.080 13 C -0.120 4.120 14 C -0.129 4.129 15 C -0.138 4.138 16 C -0.044 4.044 17 Cl -0.049 7.049 18 C -0.092 4.092 19 C -0.056 4.056 20 H 0.074 0.926 21 H 0.052 0.948 22 H 0.009 0.991 23 H 0.113 0.887 24 H 0.082 0.918 25 H 0.147 0.853 26 H 0.149 0.851 27 H 0.150 0.850 28 H 0.076 0.924 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.512 -9.400 -3.392 17.620 hybrid contribution 0.958 1.429 -0.511 1.795 sum 15.470 -7.971 -3.903 17.836 Atomic orbital electron populations 1.69889 1.06104 1.26926 1.50705 1.24889 0.94754 0.98814 0.94741 0.86882 0.80410 0.84070 0.78545 1.20256 1.20997 1.19139 1.20945 0.88310 0.94925 1.50715 0.90019 1.20497 0.97744 0.83580 0.95730 1.65346 1.09372 1.21248 1.25172 1.21642 0.95667 0.95026 0.92043 1.21025 0.96480 0.95936 0.94554 1.20632 0.97676 0.94652 0.99025 1.20973 0.93344 1.00002 0.98540 1.20894 1.00441 0.96618 0.95823 1.20295 0.90619 0.98326 0.95162 1.98351 1.55593 1.92999 1.57974 1.20586 0.92683 0.97759 0.98125 1.21722 0.90597 0.93418 0.99904 0.92559 0.94803 0.99079 0.88750 0.91762 0.85334 0.85050 0.85040 0.92448 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.96 55.43 0.77 -26.41 15 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 15 3 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 15 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.27 -6.21 6.54 56.52 0.37 -5.84 15 7 C -0.51 -14.35 9.54 -34.44 -0.33 -14.68 15 8 H 0.08 2.50 8.06 -52.49 -0.42 2.08 15 9 C 0.15 3.62 3.51 -4.97 -0.02 3.60 15 10 N -0.49 -10.36 5.43 -236.35 -1.28 -11.64 15 11 C 0.08 1.57 6.24 -4.11 -0.03 1.55 15 12 C -0.08 -1.27 6.27 -104.26 -0.65 -1.92 15 13 C -0.10 -1.31 10.04 -39.60 -0.40 -1.71 15 14 C -0.11 -1.23 10.05 -39.59 -0.40 -1.63 15 15 C -0.12 -1.41 9.83 -39.54 -0.39 -1.80 15 16 C -0.02 -0.24 6.31 -39.58 -0.25 -0.49 15 17 Cl -0.08 -1.02 28.79 -51.86 -1.49 -2.51 15 18 C -0.09 -1.47 6.14 -104.28 -0.64 -2.11 15 19 C 0.07 1.28 6.37 -4.10 -0.03 1.26 15 20 H 0.26 7.49 8.31 -40.82 -0.34 7.15 15 21 H 0.03 0.82 7.14 -51.93 -0.37 0.45 15 22 H -0.01 -0.20 7.10 -51.93 -0.37 -0.57 15 23 H 0.09 1.79 8.14 -51.93 -0.42 1.37 15 24 H 0.06 1.22 7.52 -51.93 -0.39 0.83 15 25 H 0.13 1.38 8.06 -52.49 -0.42 0.96 15 26 H 0.13 1.04 8.06 -52.49 -0.42 0.62 15 27 H 0.13 1.24 8.06 -52.49 -0.42 0.82 15 28 H 0.06 1.01 7.81 -51.93 -0.41 0.60 15 29 H 0.09 1.54 8.14 -51.93 -0.42 1.11 15 LS Contribution 262.55 15.07 3.96 3.96 Total: -1.00 -29.99 262.55 -9.18 -39.17 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -3.24 Total: -3.02 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -3.22 Total: -16.02 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.51 Total: -38.06 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.49 Total: -2.51 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.99 -9.18 -39.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287467071.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.102 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds