Wall clock time and date at job start Sun Mar 29 2020 22:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00012 * 2 1 4 4 H 1.48505 * 109.46782 * 269.99621 * 3 2 1 5 5 H 1.48493 * 109.47457 * 29.99687 * 3 2 1 6 6 H 1.48500 * 109.47000 * 149.99994 * 3 2 1 7 7 C 1.37876 * 119.99625 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00074 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99689 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.46617 * 180.02562 * 9 7 2 11 11 C 1.48055 * 111.00196 * 75.00324 * 10 9 7 12 12 C 1.51175 * 105.67292 * 146.95386 * 11 10 9 13 13 C 1.38199 * 131.76495 * 162.49158 * 12 11 10 14 14 C 1.38227 * 120.05749 * 180.02562 * 13 12 11 15 15 C 1.38239 * 120.01637 * 359.97438 * 14 13 12 16 16 C 1.38342 * 119.98819 * 0.02562 * 15 14 13 17 17 Cl 1.73597 * 120.00116 * 179.97438 * 16 15 14 18 18 C 1.38144 * 120.05923 * 0.04102 * 16 15 14 19 19 C 1.48060 * 110.99381 * 189.99997 * 10 9 7 20 20 H 0.97003 * 119.99755 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46843 * 59.99993 * 9 7 2 22 22 H 1.08998 * 109.46787 * 299.99952 * 9 7 2 23 23 H 1.08999 * 110.20047 * 266.00336 * 11 10 9 24 24 H 1.08999 * 110.20884 * 27.81955 * 11 10 9 25 25 H 1.08001 * 119.97257 * 359.97438 * 13 12 11 26 26 H 1.07993 * 119.99607 * 180.02562 * 14 13 12 27 27 H 1.07996 * 120.01040 * 180.02562 * 15 14 13 28 28 H 1.09002 * 110.21037 * 332.09359 * 19 10 9 29 29 H 1.08995 * 110.20926 * 93.91199 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 4.0011 -2.5791 0.0001 11 6 3.8402 -3.1989 -1.3348 12 6 5.0050 -4.1506 -1.4864 13 6 5.2215 -5.2111 -2.3456 14 6 6.3983 -5.9325 -2.2722 15 6 7.3603 -5.5934 -1.3392 16 6 7.1449 -4.5321 -0.4784 17 17 8.3525 -4.1063 0.6938 18 6 5.9687 -3.8110 -0.5497 19 6 5.4615 -2.6256 0.2396 20 1 -0.4850 0.8401 -0.0004 21 1 3.8752 -0.6797 0.8894 22 1 3.8745 -0.6809 -0.8905 23 1 2.8985 -3.7455 -1.3850 24 1 3.8733 -2.4347 -2.1113 25 1 4.4702 -5.4769 -3.0746 26 1 6.5666 -6.7608 -2.9445 27 1 8.2798 -6.1569 -1.2822 28 1 5.9306 -1.7078 -0.1150 29 1 5.6647 -2.7658 1.3012 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287467071.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:06 Heat of formation + Delta-G solvation = 12.566102 kcal Electronic energy + Delta-G solvation = -14115.633152 eV Core-core repulsion = 11642.737166 eV Total energy + Delta-G solvation = -2472.895986 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.38624 -38.24838 -37.29301 -34.91380 -32.54601 -32.20735 -29.22180 -28.52492 -25.25766 -22.79104 -22.38934 -22.09376 -19.00687 -17.65955 -16.92748 -16.71923 -16.51098 -15.84164 -15.20958 -15.13640 -14.48568 -14.33854 -14.11346 -13.69824 -13.66342 -13.07707 -12.68520 -12.63701 -12.41475 -12.19249 -12.06987 -11.85653 -11.75130 -11.52964 -10.82368 -10.00319 -9.66218 -9.15977 -8.30990 -6.35752 0.15515 0.21629 1.13663 1.33508 1.35796 1.46313 2.32271 2.58850 3.00278 3.13410 3.34901 3.51473 4.02619 4.23587 4.30102 4.40499 4.41800 4.57818 4.70063 4.73683 4.76956 4.87735 4.93675 5.19867 5.35834 5.42161 5.49729 5.81530 5.85122 5.98790 6.48287 6.70001 7.27801 8.85614 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.036349 B = 0.006350 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.129507 B = 4408.422688 C = 4975.942116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.946 3.054 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.250 1.250 7 C -0.519 4.519 8 H 0.037 0.963 9 C 0.163 3.837 10 N -0.513 5.513 11 C 0.086 3.914 12 C -0.100 4.100 13 C -0.100 4.100 14 C -0.095 4.095 15 C -0.110 4.110 16 C -0.026 4.026 17 Cl -0.072 7.072 18 C -0.111 4.111 19 C 0.075 3.925 20 H 0.268 0.732 21 H 0.035 0.965 22 H -0.002 1.002 23 H 0.077 0.923 24 H 0.055 0.945 25 H 0.149 0.851 26 H 0.175 0.825 27 H 0.163 0.837 28 H 0.059 0.941 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.648 -10.076 -4.867 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.769 3.231 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.173 1.173 7 C -0.558 4.558 8 H 0.056 0.944 9 C 0.035 3.965 10 N -0.236 5.236 11 C -0.042 4.042 12 C -0.101 4.101 13 C -0.118 4.118 14 C -0.113 4.113 15 C -0.129 4.129 16 C -0.053 4.053 17 Cl -0.043 7.043 18 C -0.112 4.112 19 C -0.053 4.053 20 H 0.077 0.923 21 H 0.053 0.947 22 H 0.015 0.985 23 H 0.095 0.905 24 H 0.073 0.927 25 H 0.167 0.833 26 H 0.192 0.808 27 H 0.180 0.820 28 H 0.077 0.923 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 17.283 -10.177 -4.319 20.516 hybrid contribution 0.100 1.495 -0.239 1.518 sum 17.382 -8.681 -4.559 19.957 Atomic orbital electron populations 1.70043 1.08101 1.28256 1.52114 1.25828 0.95622 1.03075 0.94125 0.85728 0.79471 0.78580 0.79292 1.19004 1.20477 1.17326 1.21141 0.90643 0.93438 1.50540 0.94447 1.20225 0.94902 0.85575 0.95758 1.65151 1.12033 1.19482 1.26934 1.21483 0.96612 0.95415 0.90656 1.20836 0.95384 0.97306 0.96597 1.20966 0.99034 0.93410 0.98408 1.21459 0.91703 0.99983 0.98121 1.21348 1.01623 0.95389 0.94524 1.20464 0.90121 0.98785 0.95913 1.98352 1.55033 1.93080 1.57876 1.20437 0.94084 0.98038 0.98634 1.21628 0.88462 0.94823 1.00369 0.92262 0.94738 0.98474 0.90466 0.92692 0.83310 0.80800 0.81951 0.92282 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.04 13.96 21.45 0.30 -58.74 15 2 C 0.01 0.66 5.47 84.65 0.46 1.12 15 3 Si 0.95 43.76 27.47 68.60 1.88 45.65 15 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 6 H -0.25 -10.77 6.54 99.48 0.65 -10.12 15 7 C -0.52 -30.36 9.54 25.60 0.24 -30.11 15 8 H 0.04 2.44 8.06 -2.91 -0.02 2.42 15 9 C 0.16 7.92 3.51 85.56 0.30 8.22 15 10 N -0.51 -22.38 5.43 -901.69 -4.89 -27.27 15 11 C 0.09 3.34 6.24 85.49 0.53 3.87 15 12 C -0.10 -3.15 6.27 -19.63 -0.12 -3.27 15 13 C -0.10 -2.31 10.04 22.26 0.22 -2.09 15 14 C -0.09 -1.68 10.05 22.27 0.22 -1.45 15 15 C -0.11 -2.16 9.83 22.29 0.22 -1.94 15 16 C -0.03 -0.67 6.31 22.27 0.14 -0.53 15 17 Cl -0.07 -1.74 28.79 -2.72 -0.08 -1.82 15 18 C -0.11 -3.49 6.14 -19.64 -0.12 -3.61 15 19 C 0.07 2.69 6.37 85.49 0.54 3.23 15 20 H 0.27 15.57 8.31 -92.71 -0.77 14.80 15 21 H 0.03 1.66 7.14 -2.39 -0.02 1.65 15 22 H 0.00 -0.11 7.10 -2.39 -0.02 -0.13 15 23 H 0.08 3.14 8.14 -2.39 -0.02 3.12 15 24 H 0.06 2.17 7.52 -2.39 -0.02 2.15 15 25 H 0.15 2.77 8.06 -2.91 -0.02 2.75 15 26 H 0.17 1.65 8.06 -2.91 -0.02 1.63 15 27 H 0.16 2.19 8.06 -2.91 -0.02 2.17 15 28 H 0.06 2.06 7.81 -2.39 -0.02 2.04 15 29 H 0.09 3.08 8.14 -2.39 -0.02 3.06 15 Total: -1.00 -67.09 262.55 0.95 -66.14 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: 1.09 Total: 2.60 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 2.65 Total: -26.56 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -4.59 Total: -86.01 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.65 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.08 Total: -1.82 kcal Total: -67.09 0.95 -66.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287467071.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.702 kcal (2) G-P(sol) polarization free energy of solvation -67.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds