Wall clock time and date at job start Sun Mar 29 2020 22:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29433 * 121.49212 * 2 1 4 4 S 1.69449 * 108.06423 * 180.02562 * 3 2 1 5 5 C 1.72022 * 96.09689 * 0.02562 * 4 3 2 6 6 N 1.38190 * 127.36067 * 179.97438 * 5 4 3 7 7 C 1.46499 * 120.00051 * 0.03408 * 6 5 4 8 8 H 1.09000 * 109.47197 * 34.98863 * 7 6 5 9 9 C 1.53005 * 109.46437 * 274.99372 * 7 6 5 10 10 C 1.50701 * 109.47260 * 154.99857 * 7 6 5 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 7 6 12 12 C 1.37871 * 119.99694 * 180.27562 * 10 7 6 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 7 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 7 15 15 H 1.48504 * 109.47209 * 89.99886 * 14 12 10 16 16 H 1.48501 * 109.47358 * 209.99377 * 14 12 10 17 17 H 1.48496 * 109.47341 * 329.99989 * 14 12 10 18 18 C 1.39014 * 105.27710 * 0.22650 * 5 4 3 19 19 C 1.43208 * 123.22320 * 179.75222 * 18 5 4 20 20 N 3.52960 * 84.00705 * 180.29660 * 2 1 3 21 21 H 1.08995 * 109.47177 * 89.97192 * 1 2 3 22 22 H 1.08995 * 109.46750 * 209.97011 * 1 2 3 23 23 H 1.09001 * 109.47192 * 329.97141 * 1 2 3 24 24 H 0.97000 * 119.99995 * 180.02562 * 6 5 4 25 25 H 1.09004 * 109.46658 * 179.97438 * 9 7 6 26 26 H 1.08995 * 109.47438 * 299.99560 * 9 7 6 27 27 H 1.08996 * 109.47069 * 60.00420 * 9 7 6 28 28 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1832 1.1037 0.0000 4 16 3.8313 0.7102 -0.0007 5 6 3.6118 -0.9960 -0.0018 6 7 4.5942 -1.9678 -0.0032 7 6 6.0072 -1.5811 -0.0032 8 1 6.1356 -0.6738 0.5871 9 6 6.4654 -1.3237 -1.4402 10 6 6.8319 -2.6911 0.5958 11 1 6.3514 -3.5942 0.9422 12 6 8.1990 -2.5512 0.7072 13 7 8.7840 -1.4514 0.2856 14 14 9.2203 -3.9239 1.4568 15 1 9.6528 -4.8596 0.3877 16 1 10.4156 -3.3454 2.1213 17 1 8.4046 -4.6583 2.4570 18 6 2.2350 -1.1881 -0.0068 19 6 1.6236 -2.4831 -0.0145 20 7 1.1385 -3.5103 -0.0182 21 1 -0.3633 0.0005 -1.0276 22 1 -0.3633 -0.8902 0.5134 23 1 -0.3634 0.8897 0.5143 24 1 4.3482 -2.9061 -0.0041 25 1 7.5167 -1.0355 -1.4402 26 1 6.3371 -2.2309 -2.0305 27 1 5.8690 -0.5208 -1.8734 28 1 9.7457 -1.3528 0.3643 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288864670.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:11 Heat of formation + Delta-G solvation = 49.648541 kcal Electronic energy + Delta-G solvation = -13987.738760 eV Core-core repulsion = 11550.787247 eV Total energy + Delta-G solvation = -2436.951513 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.063 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.06939 -36.64377 -35.78635 -33.26790 -30.65547 -29.44453 -28.18506 -25.60187 -23.35429 -21.43855 -20.19475 -18.50362 -17.55270 -16.11276 -15.47987 -14.97176 -14.84828 -14.00134 -13.46137 -13.12900 -12.93251 -12.73136 -12.60273 -12.44526 -12.17062 -12.02617 -11.45682 -11.29665 -11.03981 -10.82243 -10.58844 -10.43168 -10.21013 -10.05799 -9.41661 -8.76911 -8.26693 -7.35099 -6.40889 -4.52001 1.30093 1.51200 2.19364 2.23541 3.09167 3.11146 3.18926 3.21012 3.68973 3.81553 4.17217 4.59477 4.93164 4.95235 5.40761 5.59248 5.61548 5.72549 6.16624 6.30468 6.57108 6.60489 6.86216 6.99369 7.33217 7.40283 7.49867 7.77531 7.95676 8.01061 8.51203 9.16835 10.65107 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.034997 B = 0.006870 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.874874 B = 4074.850400 C = 4633.343578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.203 3.797 3 N -0.512 5.512 4 S 0.267 5.733 5 C 0.192 3.808 6 N -0.635 5.635 7 C 0.253 3.747 8 H 0.054 0.946 9 C -0.156 4.156 10 C -0.543 4.543 11 H 0.066 0.934 12 C 0.072 3.928 13 N -0.880 5.880 14 Si 0.907 3.093 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C -0.282 4.282 19 C 0.303 3.697 20 N -0.460 5.460 21 H 0.083 0.917 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.405 0.595 25 H 0.101 0.899 26 H 0.036 0.964 27 H 0.020 0.980 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.886 3.692 -1.108 8.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.024 3.976 3 N -0.333 5.333 4 S 0.410 5.590 5 C -0.057 4.057 6 N -0.255 5.255 7 C 0.152 3.848 8 H 0.072 0.928 9 C -0.215 4.215 10 C -0.581 4.581 11 H 0.084 0.916 12 C -0.132 4.132 13 N -0.517 5.517 14 Si 0.734 3.266 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.197 1.197 18 C -0.308 4.308 19 C -0.012 4.012 20 N -0.139 5.139 21 H 0.101 0.899 22 H 0.093 0.907 23 H 0.100 0.900 24 H 0.241 0.759 25 H 0.119 0.881 26 H 0.055 0.945 27 H 0.039 0.961 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.302 4.273 -1.121 8.534 hybrid contribution -0.019 -2.430 0.360 2.456 sum -7.321 1.843 -0.761 7.587 Atomic orbital electron populations 1.20572 0.87207 1.03559 1.03485 1.20605 0.97706 0.86745 0.92526 1.76279 0.99659 1.24638 1.32763 1.84464 1.09879 0.90940 1.73735 1.23605 0.91317 0.99390 0.91412 1.45409 1.05927 1.06209 1.67944 1.19359 0.72559 0.97930 0.94967 0.92800 1.22221 1.04371 0.98524 0.96374 1.21043 0.92054 1.02448 1.42520 0.91606 1.24844 0.97471 0.96206 0.94706 1.69842 1.11126 1.25631 1.45055 0.86343 0.79551 0.81347 0.79380 1.20295 1.20754 1.19680 1.15584 0.89368 0.88849 1.36953 1.24589 0.93196 0.91632 0.91772 1.81205 1.08242 1.10642 1.13791 0.89881 0.90733 0.90004 0.75881 0.88061 0.94487 0.96086 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 9.95 36.01 0.36 -0.62 15 2 C 0.20 3.05 6.75 -83.19 -0.56 2.49 15 3 N -0.51 -8.27 11.95 32.62 0.39 -7.88 15 4 S 0.27 4.44 22.57 -107.50 -2.43 2.01 15 5 C 0.19 3.38 7.27 -14.40 -0.10 3.27 15 6 N -0.64 -12.06 5.20 -54.41 -0.28 -12.35 15 7 C 0.25 5.50 2.58 -69.08 -0.18 5.32 15 8 H 0.05 1.25 7.42 -51.93 -0.39 0.87 15 9 C -0.16 -3.29 9.28 37.16 0.34 -2.95 15 10 C -0.54 -13.12 8.72 -34.44 -0.30 -13.43 15 11 H 0.07 1.58 7.74 -52.49 -0.41 1.17 15 12 C 0.07 1.78 5.31 -17.82 -0.09 1.69 15 13 N -0.88 -22.25 11.33 55.43 0.63 -21.62 15 14 Si 0.91 19.42 29.54 -169.99 -5.02 14.40 15 15 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 16 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 18 C -0.28 -4.63 5.76 -107.27 -0.62 -5.25 15 19 C 0.30 5.13 14.06 -22.47 -0.32 4.81 15 20 N -0.46 -8.31 18.54 41.84 0.78 -7.53 15 21 H 0.08 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.07 0.81 7.40 -51.93 -0.38 0.43 15 23 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.40 7.49 8.26 -40.82 -0.34 7.15 15 25 H 0.10 2.35 6.08 -51.93 -0.32 2.04 15 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 15 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 15 28 H 0.27 6.50 8.31 -40.82 -0.34 6.16 15 LS Contribution 267.90 15.07 4.04 4.04 Total: -1.00 -25.25 267.90 -6.02 -31.27 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -2.65 Total: 2.32 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.47 Total: -4.65 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 1.51 Total: -49.38 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -2.43 Total: 2.01 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -25.25 -6.02 -31.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288864670.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.919 kcal (2) G-P(sol) polarization free energy of solvation -25.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds