Wall clock time and date at job start Sun Mar 29 2020 21:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 119.99802 * 2 1 4 4 N 1.46901 * 109.47010 * 124.12241 * 3 2 1 5 5 C 1.46900 * 111.00134 * 299.15674 * 4 3 2 6 6 C 1.50696 * 109.46972 * 288.12641 * 5 4 3 7 7 H 1.07994 * 120.00199 * 354.71844 * 6 5 4 8 8 C 1.37881 * 119.99686 * 174.71290 * 6 5 4 9 9 N 1.31512 * 119.99818 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99975 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47218 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46857 * 120.00507 * 10 8 6 13 13 H 1.48493 * 109.47627 * 240.00219 * 10 8 6 14 14 C 1.46905 * 110.99923 * 63.11624 * 4 3 2 15 15 C 1.53000 * 109.47185 * 66.04223 * 14 4 3 16 16 N 1.46500 * 109.46828 * 180.02562 * 15 14 4 17 17 C 1.34424 * 126.82408 * 125.00268 * 16 15 14 18 18 N 1.30832 * 108.08041 * 180.02562 * 17 16 15 19 19 C 1.33246 * 109.82596 * 359.97438 * 18 17 16 20 20 N 1.30705 * 108.94702 * 0.27076 * 19 18 17 21 21 H 1.08005 * 120.00191 * 179.97438 * 1 2 3 22 22 H 1.08004 * 120.00236 * 0.02562 * 1 2 3 23 23 H 1.07995 * 120.00082 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47154 * 4.12459 * 3 2 1 25 25 H 1.09000 * 109.46820 * 244.12452 * 3 2 1 26 26 H 1.09001 * 109.46797 * 48.12556 * 5 4 3 27 27 H 1.09003 * 109.47051 * 168.12510 * 5 4 3 28 28 H 0.97005 * 120.00187 * 179.97438 * 9 8 6 29 29 H 1.09002 * 109.46641 * 306.04253 * 14 4 3 30 30 H 1.08998 * 109.46575 * 186.04276 * 14 4 3 31 31 H 1.08995 * 109.46934 * 60.00403 * 15 14 4 32 32 H 1.08997 * 109.47156 * 300.00285 * 15 14 4 33 33 H 1.07995 * 125.96251 * 359.96842 * 17 16 15 34 34 H 1.07999 * 125.52670 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9811 1.3407 1.1466 5 6 2.2446 1.2412 2.4137 6 6 1.5051 2.5295 2.6674 7 1 1.6422 3.3705 2.0039 8 6 0.6534 2.6344 3.7466 9 7 0.4868 1.6104 4.5548 10 14 -0.2627 4.2316 4.0616 11 1 0.0963 5.2227 3.0157 12 1 -1.7256 3.9791 4.0226 13 1 0.1124 4.7625 5.3967 14 6 3.9951 0.2829 1.0424 15 6 4.9015 0.5617 -0.1582 16 7 5.9123 -0.4937 -0.2624 17 6 6.1649 -1.2643 -1.3345 18 7 7.1378 -2.0828 -1.0260 19 6 7.5307 -1.8653 0.2285 20 7 6.8062 -0.9050 0.7397 21 1 -0.5401 -0.9353 -0.0004 22 1 -0.5401 0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3574 2.1323 0.0739 25 1 2.6335 1.3955 -0.9246 26 1 1.5319 0.4185 2.3559 27 1 2.9456 1.0581 3.2280 28 1 -0.1121 1.6843 5.3143 29 1 3.5026 -0.6805 0.9099 30 1 4.5939 0.2627 1.9529 31 1 5.3939 1.5250 -0.0257 32 1 4.3026 0.5819 -1.0687 33 1 5.6533 -1.2168 -2.2844 34 1 8.3174 -2.3988 0.7412 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292136307.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:31 Heat of formation + Delta-G solvation = 119.876360 kcal Electronic energy + Delta-G solvation = -16386.170290 eV Core-core repulsion = 13743.062969 eV Total energy + Delta-G solvation = -2643.107321 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.98253 -37.82304 -34.30700 -32.89109 -32.01033 -31.15959 -28.97442 -26.84119 -25.28296 -23.10641 -21.93282 -21.30041 -20.90741 -18.79621 -17.28357 -16.31735 -15.89763 -15.26995 -15.02206 -14.47576 -14.30472 -14.18422 -13.97615 -13.16382 -13.04748 -12.32036 -12.18412 -11.85491 -11.29112 -11.06450 -10.91228 -10.80512 -10.57178 -10.54349 -10.05706 -9.95023 -9.76110 -9.66008 -9.24889 -8.83830 -8.46003 -7.42788 -6.05467 -4.07067 1.69510 2.37309 2.77683 2.99218 3.28105 3.36086 3.40037 4.31373 4.36034 4.49621 4.83670 5.01715 5.21613 5.29925 5.32157 5.40387 5.43251 5.64227 5.88758 6.01430 6.22144 6.28680 6.31876 6.47137 6.52096 6.84916 7.04958 7.15373 7.21809 7.34588 7.73959 7.97802 8.07391 8.10895 8.44251 9.00580 9.57085 11.05175 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.035224 B = 0.005466 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.729697 B = 5121.576468 C = 5508.537004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.187 4.187 3 C 0.085 3.915 4 N -0.526 5.526 5 C 0.192 3.808 6 C -0.504 4.504 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.044 3.956 15 C 0.129 3.871 16 N -0.368 5.368 17 C 0.248 3.752 18 N -0.554 5.554 19 C 0.188 3.812 20 N -0.311 5.311 21 H 0.085 0.915 22 H 0.099 0.901 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.060 0.940 26 H 0.008 0.992 27 H 0.024 0.976 28 H 0.260 0.740 29 H 0.032 0.968 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.216 0.784 34 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.534 -4.144 -11.613 13.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.207 4.207 3 C -0.043 4.043 4 N -0.250 5.250 5 C 0.067 3.933 6 C -0.543 4.543 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.724 3.276 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.085 4.085 15 C 0.007 3.993 16 N -0.159 5.159 17 C -0.049 4.049 18 N -0.282 5.282 19 C -0.115 4.115 20 N -0.140 5.140 21 H 0.104 0.896 22 H 0.117 0.883 23 H 0.112 0.888 24 H 0.107 0.893 25 H 0.078 0.922 26 H 0.026 0.974 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.232 0.768 34 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 6.852 -3.620 -10.909 13.381 hybrid contribution -1.214 -0.043 0.257 1.241 sum 5.638 -3.662 -10.653 12.597 Atomic orbital electron populations 1.23737 0.96033 1.01300 0.99960 1.23510 0.96810 0.99626 1.00752 1.21346 0.94915 0.94782 0.93249 1.62421 1.14729 1.42986 1.04830 1.19791 0.92218 0.97459 0.83823 1.21129 1.24189 0.98245 1.10753 0.91838 1.24972 0.96872 0.96570 0.96086 1.69968 1.37747 1.30158 1.15806 0.86476 0.79360 0.83586 0.78208 1.19640 1.21148 1.21031 1.22240 0.94489 0.94401 0.97414 1.22015 0.87441 0.88311 1.01504 1.50656 1.27428 1.28569 1.09259 1.26010 0.95277 0.89014 0.94626 1.70504 1.15053 1.26843 1.15820 1.25976 0.99816 0.95381 0.90321 1.78102 1.05676 1.17355 1.12837 0.89614 0.88301 0.88755 0.89309 0.92153 0.97443 0.95788 0.92986 0.94976 0.89930 0.88370 0.88255 0.76769 0.76948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 14.32 29.02 0.42 -2.45 16 2 C -0.19 -3.14 7.45 -36.02 -0.27 -3.41 16 3 C 0.09 1.46 5.46 -4.98 -0.03 1.43 16 4 N -0.53 -10.41 4.66 -237.51 -1.11 -11.51 16 5 C 0.19 4.80 4.59 -4.98 -0.02 4.78 16 6 C -0.50 -13.68 8.51 -34.44 -0.29 -13.97 16 7 H 0.06 1.70 7.67 -52.49 -0.40 1.30 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 10 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.04 0.75 4.99 -3.82 -0.02 0.73 16 15 C 0.13 1.68 6.48 -4.04 -0.03 1.65 16 16 N -0.37 -4.96 3.69 -62.64 -0.23 -5.19 16 17 C 0.25 2.86 12.63 -90.66 -1.14 1.71 16 18 N -0.55 -7.40 11.19 -15.84 -0.18 -7.58 16 19 C 0.19 2.46 13.03 -91.82 -1.20 1.27 16 20 N -0.31 -4.76 12.56 29.29 0.37 -4.39 16 21 H 0.09 1.29 8.06 -52.48 -0.42 0.87 16 22 H 0.10 1.67 7.84 -52.48 -0.41 1.26 16 23 H 0.09 1.52 6.76 -52.49 -0.36 1.16 16 24 H 0.09 1.68 7.02 -51.93 -0.36 1.32 16 25 H 0.06 0.82 6.33 -51.93 -0.33 0.49 16 26 H 0.01 0.21 6.75 -51.93 -0.35 -0.14 16 27 H 0.02 0.66 7.81 -51.93 -0.41 0.25 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.03 0.56 6.29 -51.93 -0.33 0.23 16 30 H 0.08 1.58 7.86 -51.93 -0.41 1.17 16 31 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.10 1.02 6.43 -51.93 -0.33 0.68 16 33 H 0.22 1.48 8.06 -52.49 -0.42 1.05 16 34 H 0.21 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 290.56 15.07 4.38 4.38 Total: -1.00 -31.77 290.56 -8.25 -40.01 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.51 Total: 0.46 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -2.68 Total: -6.80 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -0.41 Total: -54.26 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.77 -8.25 -40.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292136307.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.887 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds