Wall clock time and date at job start Sun Mar 29 2020 21:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 119.99802 * 2 1 4 4 N 1.46901 * 109.47010 * 124.12241 * 3 2 1 5 5 C 1.46900 * 111.00134 * 299.15674 * 4 3 2 6 6 C 1.50696 * 109.46972 * 288.12641 * 5 4 3 7 7 H 1.07994 * 120.00199 * 354.71844 * 6 5 4 8 8 C 1.37881 * 119.99686 * 174.71290 * 6 5 4 9 9 N 1.31512 * 119.99818 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99975 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47218 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46857 * 120.00507 * 10 8 6 13 13 H 1.48493 * 109.47627 * 240.00219 * 10 8 6 14 14 C 1.46905 * 110.99923 * 63.11624 * 4 3 2 15 15 C 1.53000 * 109.47185 * 66.04223 * 14 4 3 16 16 N 1.46500 * 109.46828 * 180.02562 * 15 14 4 17 17 C 1.34424 * 126.82408 * 125.00268 * 16 15 14 18 18 N 1.30832 * 108.08041 * 180.02562 * 17 16 15 19 19 C 1.33246 * 109.82596 * 359.97438 * 18 17 16 20 20 N 1.30705 * 108.94702 * 0.27076 * 19 18 17 21 21 H 1.08005 * 120.00191 * 179.97438 * 1 2 3 22 22 H 1.08004 * 120.00236 * 0.02562 * 1 2 3 23 23 H 1.07995 * 120.00082 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47154 * 4.12459 * 3 2 1 25 25 H 1.09000 * 109.46820 * 244.12452 * 3 2 1 26 26 H 1.09001 * 109.46797 * 48.12556 * 5 4 3 27 27 H 1.09003 * 109.47051 * 168.12510 * 5 4 3 28 28 H 0.97005 * 120.00187 * 179.97438 * 9 8 6 29 29 H 1.09002 * 109.46641 * 306.04253 * 14 4 3 30 30 H 1.08998 * 109.46575 * 186.04276 * 14 4 3 31 31 H 1.08995 * 109.46934 * 60.00403 * 15 14 4 32 32 H 1.08997 * 109.47156 * 300.00285 * 15 14 4 33 33 H 1.07995 * 125.96251 * 359.96842 * 17 16 15 34 34 H 1.07999 * 125.52670 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9811 1.3407 1.1466 5 6 2.2446 1.2412 2.4137 6 6 1.5051 2.5295 2.6674 7 1 1.6422 3.3705 2.0039 8 6 0.6534 2.6344 3.7466 9 7 0.4868 1.6104 4.5548 10 14 -0.2627 4.2316 4.0616 11 1 0.0963 5.2227 3.0157 12 1 -1.7256 3.9791 4.0226 13 1 0.1124 4.7625 5.3967 14 6 3.9951 0.2829 1.0424 15 6 4.9015 0.5617 -0.1582 16 7 5.9123 -0.4937 -0.2624 17 6 6.1649 -1.2643 -1.3345 18 7 7.1378 -2.0828 -1.0260 19 6 7.5307 -1.8653 0.2285 20 7 6.8062 -0.9050 0.7397 21 1 -0.5401 -0.9353 -0.0004 22 1 -0.5401 0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3574 2.1323 0.0739 25 1 2.6335 1.3955 -0.9246 26 1 1.5319 0.4185 2.3559 27 1 2.9456 1.0581 3.2280 28 1 -0.1121 1.6843 5.3143 29 1 3.5026 -0.6805 0.9099 30 1 4.5939 0.2627 1.9529 31 1 5.3939 1.5250 -0.0257 32 1 4.3026 0.5819 -1.0687 33 1 5.6533 -1.2168 -2.2844 34 1 8.3174 -2.3988 0.7412 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292136307.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:31 Heat of formation + Delta-G solvation = 100.063889 kcal Electronic energy + Delta-G solvation = -16387.029423 eV Core-core repulsion = 13743.062969 eV Total energy + Delta-G solvation = -2643.966454 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.95172 -39.32738 -35.50253 -34.79283 -33.49487 -32.15289 -30.46412 -28.49545 -26.78144 -24.63381 -22.89640 -22.72709 -22.20148 -20.19261 -18.39986 -18.28481 -17.18431 -16.72208 -16.21909 -16.09155 -15.59249 -15.53323 -15.06453 -14.56388 -14.41446 -14.05837 -13.62511 -13.08430 -13.00641 -12.70600 -12.59643 -12.35450 -12.18910 -12.11319 -11.82936 -11.32059 -10.97911 -10.77841 -10.61843 -10.60421 -10.19100 -9.07050 -8.18167 -6.27662 0.74942 1.36610 1.41083 1.42820 1.48354 1.55334 2.04400 2.41200 3.15322 3.24193 3.55072 3.62056 3.99851 4.05095 4.10477 4.17071 4.30732 4.40803 4.56119 4.78826 4.85150 4.98065 5.08659 5.20906 5.29472 5.32071 5.52367 5.65290 5.73439 5.88419 5.95155 6.07917 6.31179 6.54749 6.88904 7.15045 7.41900 8.92759 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.035224 B = 0.005466 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.729697 B = 5121.576468 C = 5508.537004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.192 4.192 3 C 0.085 3.915 4 N -0.530 5.530 5 C 0.208 3.792 6 C -0.513 4.513 7 H 0.065 0.935 8 C 0.003 3.997 9 N -0.936 5.936 10 Si 0.965 3.035 11 H -0.260 1.260 12 H -0.280 1.280 13 H -0.283 1.283 14 C 0.052 3.948 15 C 0.143 3.857 16 N -0.380 5.380 17 C 0.261 3.739 18 N -0.577 5.577 19 C 0.190 3.810 20 N -0.360 5.360 21 H 0.101 0.899 22 H 0.092 0.908 23 H 0.104 0.896 24 H 0.069 0.931 25 H 0.106 0.894 26 H -0.017 1.017 27 H -0.013 1.013 28 H 0.262 0.738 29 H 0.028 0.972 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.138 0.862 33 H 0.263 0.737 34 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.531 -3.643 -13.772 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.212 4.212 3 C -0.042 4.042 4 N -0.253 5.253 5 C 0.082 3.918 6 C -0.552 4.552 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.577 5.577 10 Si 0.790 3.210 11 H -0.184 1.184 12 H -0.206 1.206 13 H -0.209 1.209 14 C -0.077 4.077 15 C 0.021 3.979 16 N -0.171 5.171 17 C -0.034 4.034 18 N -0.305 5.305 19 C -0.112 4.112 20 N -0.188 5.188 21 H 0.119 0.881 22 H 0.110 0.890 23 H 0.122 0.878 24 H 0.087 0.913 25 H 0.124 0.876 26 H 0.001 0.999 27 H 0.005 0.995 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.156 0.844 33 H 0.278 0.722 34 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 6.864 -3.116 -13.095 15.110 hybrid contribution -1.169 -0.272 0.890 1.494 sum 5.695 -3.388 -12.205 13.888 Atomic orbital electron populations 1.23883 0.96284 1.01772 0.99767 1.23563 0.96936 0.99777 1.00884 1.21424 0.94802 0.94291 0.93699 1.62268 1.15079 1.44333 1.03577 1.19377 0.90979 0.95890 0.85569 1.21439 1.24150 0.98896 1.10698 0.91664 1.25857 0.97846 0.99948 0.95841 1.70102 1.38699 1.32435 1.16469 0.85399 0.77998 0.79489 0.78140 1.18381 1.20575 1.20915 1.22115 0.93889 0.93384 0.98294 1.21879 0.86959 0.88211 1.00835 1.50630 1.27565 1.29242 1.09653 1.26959 0.94163 0.87035 0.95292 1.70560 1.16189 1.27830 1.15966 1.26561 0.99649 0.94604 0.90422 1.78065 1.07184 1.18940 1.14649 0.88117 0.89012 0.87826 0.91281 0.87569 0.99937 0.99482 0.92913 0.95391 0.93127 0.88508 0.84394 0.72184 0.74443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.79 14.32 67.78 0.97 -4.82 16 2 C -0.19 -6.17 7.45 25.65 0.19 -5.98 16 3 C 0.09 2.77 5.46 85.56 0.47 3.23 16 4 N -0.53 -20.82 4.66 -905.35 -4.22 -25.03 16 5 C 0.21 10.75 4.59 85.56 0.39 11.14 16 6 C -0.51 -28.18 8.51 25.60 0.22 -27.96 16 7 H 0.07 3.49 7.67 -2.91 -0.02 3.47 16 8 C 0.00 0.16 5.46 84.66 0.46 0.62 16 9 N -0.94 -56.12 13.29 21.45 0.28 -55.83 16 10 Si 0.96 43.62 29.54 68.60 2.03 45.64 16 11 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 14 C 0.05 1.77 4.99 86.30 0.43 2.20 16 15 C 0.14 3.37 6.48 86.38 0.56 3.93 16 16 N -0.38 -9.49 3.69 -352.08 -1.30 -10.79 16 17 C 0.26 5.19 12.63 180.36 2.28 7.47 16 18 N -0.58 -14.16 11.19 -204.01 -2.28 -16.44 16 19 C 0.19 4.76 13.03 180.77 2.36 7.12 16 20 N -0.36 -10.80 12.56 -61.25 -0.77 -11.57 16 21 H 0.10 2.90 8.06 -2.91 -0.02 2.88 16 22 H 0.09 3.07 7.84 -2.91 -0.02 3.05 16 23 H 0.10 3.15 6.76 -2.91 -0.02 3.13 16 24 H 0.07 2.54 7.02 -2.39 -0.02 2.52 16 25 H 0.11 2.47 6.33 -2.39 -0.02 2.45 16 26 H -0.02 -0.96 6.75 -2.39 -0.02 -0.98 16 27 H -0.01 -0.75 7.81 -2.39 -0.02 -0.77 16 28 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 29 H 0.03 0.96 6.29 -2.39 -0.02 0.95 16 30 H 0.05 2.01 7.86 -2.39 -0.02 2.00 16 31 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.14 2.17 6.43 -2.39 -0.02 2.16 16 33 H 0.26 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.24 4.16 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -70.69 290.56 3.15 -67.54 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 1.08 Total: 9.53 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 8.33 Total: -3.04 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -8.28 Total: -119.67 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -70.69 3.15 -67.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292136307.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.602 kcal (2) G-P(sol) polarization free energy of solvation -70.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds