Wall clock time and date at job start Sun Mar 29 2020 21:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 120.00377 * 2 1 4 4 N 1.46896 * 109.47577 * 126.06371 * 3 2 1 5 5 C 1.46896 * 111.00166 * 299.16279 * 4 3 2 6 6 C 1.50699 * 109.47027 * 287.89089 * 5 4 3 7 7 H 1.08000 * 119.99983 * 4.68001 * 6 5 4 8 8 C 1.37881 * 120.00069 * 184.67238 * 6 5 4 9 9 N 1.31509 * 120.00201 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99943 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46945 * 59.99930 * 10 8 6 12 12 H 1.48496 * 109.47133 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47267 * 300.00195 * 10 8 6 14 14 C 1.46909 * 110.99753 * 63.11332 * 4 3 2 15 15 C 1.50696 * 109.46915 * 70.98616 * 14 4 3 16 16 C 1.35352 * 126.90924 * 94.27151 * 15 14 4 17 17 N 1.33772 * 106.49271 * 179.97438 * 16 15 14 18 18 N 1.28634 * 108.89002 * 359.97438 * 17 16 15 19 19 N 1.28717 * 110.17333 * 359.75600 * 18 17 16 20 20 C 1.46505 * 125.86551 * 180.24101 * 19 18 17 21 21 H 1.08000 * 119.99715 * 0.02562 * 1 2 3 22 22 H 1.07995 * 120.00209 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.99715 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.47031 * 6.06519 * 3 2 1 25 25 H 1.08995 * 109.47400 * 246.06796 * 3 2 1 26 26 H 1.09000 * 109.47615 * 47.89324 * 5 4 3 27 27 H 1.09001 * 109.47532 * 167.89363 * 5 4 3 28 28 H 0.97000 * 120.00181 * 179.97438 * 9 8 6 29 29 H 1.08995 * 109.47215 * 190.99032 * 14 4 3 30 30 H 1.09002 * 109.46659 * 310.98863 * 14 4 3 31 31 H 1.07993 * 126.75232 * 359.97438 * 16 15 14 32 32 H 1.09000 * 109.46928 * 275.22738 * 20 19 18 33 33 H 1.08996 * 109.46945 * 35.22185 * 20 19 18 34 34 H 1.08995 * 109.47128 * 155.22692 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0145 1.3215 1.1195 5 6 2.3155 1.2003 2.4058 6 6 1.5888 2.4860 2.7057 7 1 1.5782 3.2829 1.9769 8 6 0.9374 2.6448 3.9105 9 7 0.9506 1.6746 4.7982 10 14 0.0360 4.2383 4.2820 11 1 -1.0274 4.4533 3.2680 12 1 -0.5761 4.1575 5.6325 13 1 0.9955 5.3709 4.2408 14 6 4.0246 0.2656 0.9677 15 6 4.9576 0.6216 -0.1609 16 6 6.1461 1.2617 -0.0619 17 7 6.6271 1.3641 -1.3059 18 7 5.7921 0.8228 -2.1211 19 7 4.7789 0.3598 -1.4763 20 6 3.6279 -0.3286 -2.0659 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9352 -0.0004 23 1 1.8499 -0.9353 0.0004 24 1 1.3602 2.1307 0.1086 25 1 2.6063 1.4113 -0.9393 26 1 1.5983 0.3811 2.3539 27 1 3.0397 0.9996 3.1954 28 1 0.4926 1.7865 5.6459 29 1 4.5930 0.1709 1.8929 30 1 3.5307 -0.6805 0.7462 31 1 6.6140 1.6193 0.8434 32 1 2.9001 0.4075 -2.4075 33 1 3.9591 -0.9314 -2.9114 34 1 3.1681 -0.9740 -1.3175 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292184041.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:32 Heat of formation + Delta-G solvation = 133.267727 kcal Electronic energy + Delta-G solvation = -16963.277474 eV Core-core repulsion = 14320.750846 eV Total energy + Delta-G solvation = -2642.526628 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.01246 -37.75732 -34.40287 -33.04415 -32.74063 -30.92590 -27.98991 -27.42018 -26.26660 -24.06419 -22.23469 -21.33366 -20.48354 -19.15563 -16.95378 -16.65813 -16.30383 -15.46949 -14.77852 -14.53946 -14.32698 -13.90588 -13.68408 -13.25450 -12.91656 -12.52162 -12.26376 -11.87422 -11.46461 -11.23845 -11.04793 -10.91981 -10.78641 -10.66321 -10.52770 -10.02176 -9.83660 -9.40195 -9.00894 -8.85038 -8.47827 -7.46528 -6.08801 -4.09841 1.82040 2.54180 2.62250 2.86753 3.29441 3.34177 3.37236 4.36829 4.51071 4.68763 4.89482 4.99174 5.05592 5.18095 5.28151 5.28333 5.38477 5.51851 5.77924 5.82634 5.92224 6.08557 6.17796 6.42612 6.48162 6.78151 6.89683 7.05815 7.08430 7.23055 7.68534 7.92491 8.04652 8.39898 8.75390 8.95885 9.54108 11.01799 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.030166 B = 0.006989 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.969194 B = 4005.440813 C = 4485.321603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.194 4.194 3 C 0.082 3.918 4 N -0.521 5.521 5 C 0.193 3.807 6 C -0.505 4.505 7 H 0.061 0.939 8 C 0.058 3.942 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.118 3.882 15 C 0.011 3.989 16 C -0.042 4.042 17 N -0.276 5.276 18 N -0.102 5.102 19 N -0.292 5.292 20 C 0.076 3.924 21 H 0.099 0.901 22 H 0.088 0.912 23 H 0.097 0.903 24 H 0.088 0.912 25 H 0.058 0.942 26 H 0.001 0.999 27 H 0.033 0.967 28 H 0.262 0.738 29 H 0.100 0.900 30 H 0.041 0.959 31 H 0.188 0.812 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.937 -5.923 -9.608 11.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.213 4.213 3 C -0.046 4.046 4 N -0.244 5.244 5 C 0.068 3.932 6 C -0.544 4.544 7 H 0.079 0.921 8 C -0.143 4.143 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.201 1.201 14 C -0.012 4.012 15 C -0.121 4.121 16 C -0.200 4.200 17 N -0.141 5.141 18 N -0.082 5.082 19 N -0.086 5.086 20 C -0.065 4.065 21 H 0.117 0.883 22 H 0.107 0.893 23 H 0.115 0.885 24 H 0.106 0.894 25 H 0.076 0.924 26 H 0.019 0.981 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.059 0.941 31 H 0.205 0.795 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.774 -5.334 -10.817 12.376 hybrid contribution -1.654 -0.188 1.420 2.188 sum 1.120 -5.522 -9.398 10.958 Atomic orbital electron populations 1.23772 0.95959 1.01491 0.99394 1.23579 0.96871 0.99511 1.01353 1.21439 0.94528 0.94778 0.93899 1.62460 1.14252 1.43003 1.04724 1.19814 0.92828 0.97149 0.83387 1.21039 1.31444 1.00501 1.01401 0.92092 1.24938 0.96632 0.96691 0.96087 1.69928 1.43764 1.32253 1.07809 0.86587 0.79902 0.83797 0.77297 1.20347 1.21336 1.20130 1.20607 0.92902 0.93831 0.93883 1.22366 0.99384 1.04471 0.85906 1.23308 0.94992 1.04397 0.97280 1.75005 1.22014 1.16653 1.00477 1.78202 0.94296 1.14197 1.21477 1.47131 1.16853 1.38723 1.05885 1.22449 0.85432 0.97963 1.00652 0.88263 0.89327 0.88491 0.89361 0.92420 0.98119 0.94875 0.92826 0.88184 0.94082 0.79464 0.88776 0.88644 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 14.32 29.01 0.42 -2.07 16 2 C -0.19 -2.90 6.24 -36.03 -0.22 -3.13 16 3 C 0.08 1.40 5.13 -4.98 -0.03 1.37 16 4 N -0.52 -10.14 4.61 -238.97 -1.10 -11.24 16 5 C 0.19 4.58 4.59 -4.98 -0.02 4.55 16 6 C -0.51 -13.44 8.66 -34.44 -0.30 -13.74 16 7 H 0.06 1.63 7.36 -52.49 -0.39 1.24 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -25.59 13.29 55.43 0.74 -24.86 16 10 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 C 0.12 1.89 5.08 -4.97 -0.03 1.86 16 15 C 0.01 0.18 5.90 -82.09 -0.48 -0.31 16 16 C -0.04 -0.68 11.99 -17.74 -0.21 -0.89 16 17 N -0.28 -4.90 12.41 30.23 0.38 -4.53 16 18 N -0.10 -1.73 13.17 60.35 0.79 -0.94 16 19 N -0.29 -4.27 3.48 -63.79 -0.22 -4.49 16 20 C 0.08 0.79 9.19 59.85 0.55 1.34 16 21 H 0.10 1.53 7.84 -52.49 -0.41 1.12 16 22 H 0.09 1.14 8.06 -52.49 -0.42 0.72 16 23 H 0.10 1.29 5.26 -52.49 -0.28 1.01 16 24 H 0.09 1.70 6.83 -51.93 -0.35 1.35 16 25 H 0.06 0.90 4.44 -51.93 -0.23 0.66 16 26 H 0.00 0.03 6.75 -51.93 -0.35 -0.32 16 27 H 0.03 0.85 7.74 -51.93 -0.40 0.45 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.10 1.57 7.75 -51.93 -0.40 1.17 16 30 H 0.04 0.60 5.32 -51.93 -0.28 0.32 16 31 H 0.19 2.59 8.06 -52.49 -0.42 2.17 16 32 H 0.09 0.92 6.78 -51.93 -0.35 0.56 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.10 0.93 4.84 -51.93 -0.25 0.68 16 LS Contribution 277.84 15.07 4.19 4.19 Total: -1.00 -30.70 277.84 -4.77 -35.48 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -4.10 Total: -0.13 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -0.43 Total: -9.53 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.58 Total: -46.05 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.70 -4.77 -35.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292184041.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.745 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds