Wall clock time and date at job start Sun Mar 29 2020 21:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 120.00377 * 2 1 4 4 N 1.46896 * 109.47577 * 126.06371 * 3 2 1 5 5 C 1.46896 * 111.00166 * 299.16279 * 4 3 2 6 6 C 1.50699 * 109.47027 * 287.89089 * 5 4 3 7 7 H 1.08000 * 119.99983 * 4.68001 * 6 5 4 8 8 C 1.37881 * 120.00069 * 184.67238 * 6 5 4 9 9 N 1.31509 * 120.00201 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99943 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46945 * 59.99930 * 10 8 6 12 12 H 1.48496 * 109.47133 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47267 * 300.00195 * 10 8 6 14 14 C 1.46909 * 110.99753 * 63.11332 * 4 3 2 15 15 C 1.50696 * 109.46915 * 70.98616 * 14 4 3 16 16 C 1.35352 * 126.90924 * 94.27151 * 15 14 4 17 17 N 1.33772 * 106.49271 * 179.97438 * 16 15 14 18 18 N 1.28634 * 108.89002 * 359.97438 * 17 16 15 19 19 N 1.28717 * 110.17333 * 359.75600 * 18 17 16 20 20 C 1.46505 * 125.86551 * 180.24101 * 19 18 17 21 21 H 1.08000 * 119.99715 * 0.02562 * 1 2 3 22 22 H 1.07995 * 120.00209 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.99715 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.47031 * 6.06519 * 3 2 1 25 25 H 1.08995 * 109.47400 * 246.06796 * 3 2 1 26 26 H 1.09000 * 109.47615 * 47.89324 * 5 4 3 27 27 H 1.09001 * 109.47532 * 167.89363 * 5 4 3 28 28 H 0.97000 * 120.00181 * 179.97438 * 9 8 6 29 29 H 1.08995 * 109.47215 * 190.99032 * 14 4 3 30 30 H 1.09002 * 109.46659 * 310.98863 * 14 4 3 31 31 H 1.07993 * 126.75232 * 359.97438 * 16 15 14 32 32 H 1.09000 * 109.46928 * 275.22738 * 20 19 18 33 33 H 1.08996 * 109.46945 * 35.22185 * 20 19 18 34 34 H 1.08995 * 109.47128 * 155.22692 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0145 1.3215 1.1195 5 6 2.3155 1.2003 2.4058 6 6 1.5888 2.4860 2.7057 7 1 1.5782 3.2829 1.9769 8 6 0.9374 2.6448 3.9105 9 7 0.9506 1.6746 4.7982 10 14 0.0360 4.2383 4.2820 11 1 -1.0274 4.4533 3.2680 12 1 -0.5761 4.1575 5.6325 13 1 0.9955 5.3709 4.2408 14 6 4.0246 0.2656 0.9677 15 6 4.9576 0.6216 -0.1609 16 6 6.1461 1.2617 -0.0619 17 7 6.6271 1.3641 -1.3059 18 7 5.7921 0.8228 -2.1211 19 7 4.7789 0.3598 -1.4763 20 6 3.6279 -0.3286 -2.0659 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9352 -0.0004 23 1 1.8499 -0.9353 0.0004 24 1 1.3602 2.1307 0.1086 25 1 2.6063 1.4113 -0.9393 26 1 1.5983 0.3811 2.3539 27 1 3.0397 0.9996 3.1954 28 1 0.4926 1.7865 5.6459 29 1 4.5930 0.1709 1.8929 30 1 3.5307 -0.6805 0.7462 31 1 6.6140 1.6193 0.8434 32 1 2.9001 0.4075 -2.4075 33 1 3.9591 -0.9314 -2.9114 34 1 3.1681 -0.9740 -1.3175 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292184041.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:31 Heat of formation + Delta-G solvation = 111.731278 kcal Electronic energy + Delta-G solvation = -16964.211364 eV Core-core repulsion = 14320.750846 eV Total energy + Delta-G solvation = -2643.460518 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.23392 -39.21296 -35.59287 -34.78444 -34.18832 -32.35520 -29.23055 -29.01212 -27.54499 -25.77292 -23.48410 -22.92726 -21.69501 -20.46081 -18.40145 -18.02389 -17.82584 -16.96835 -16.39514 -15.92886 -15.69482 -15.38521 -14.94993 -14.25712 -14.17429 -14.06700 -13.60055 -13.23374 -13.07630 -12.89426 -12.64220 -12.45628 -12.27381 -12.15588 -11.93155 -11.83135 -11.33306 -10.98839 -10.57675 -10.23873 -10.12216 -9.00715 -8.15948 -6.23311 0.59346 1.40638 1.42743 1.44310 1.50007 1.51858 1.60819 2.42619 3.16884 3.31742 3.52562 3.69581 3.83284 4.01105 4.14805 4.17561 4.30848 4.44554 4.51283 4.63326 4.69849 4.85203 4.96723 5.09087 5.23836 5.26809 5.33118 5.63642 5.68532 5.70368 5.89122 6.09688 6.35151 6.58065 6.90326 7.44902 7.50593 8.93772 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.030166 B = 0.006989 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.969194 B = 4005.440813 C = 4485.321603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.197 4.197 3 C 0.085 3.915 4 N -0.536 5.536 5 C 0.211 3.789 6 C -0.517 4.517 7 H 0.054 0.946 8 C 0.010 3.990 9 N -0.929 5.929 10 Si 0.955 3.045 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.125 3.875 15 C 0.007 3.993 16 C -0.049 4.049 17 N -0.304 5.304 18 N -0.115 5.115 19 N -0.281 5.281 20 C 0.064 3.936 21 H 0.086 0.914 22 H 0.112 0.888 23 H 0.121 0.879 24 H 0.060 0.940 25 H 0.075 0.925 26 H -0.012 1.012 27 H 0.009 0.991 28 H 0.263 0.737 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.203 0.797 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.432 -6.447 -10.453 12.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.216 4.216 3 C -0.042 4.042 4 N -0.259 5.259 5 C 0.085 3.915 6 C -0.555 4.555 7 H 0.072 0.928 8 C -0.188 4.188 9 N -0.570 5.570 10 Si 0.781 3.219 11 H -0.195 1.195 12 H -0.210 1.210 13 H -0.199 1.199 14 C -0.005 4.005 15 C -0.126 4.126 16 C -0.208 4.208 17 N -0.169 5.169 18 N -0.094 5.094 19 N -0.076 5.076 20 C -0.076 4.076 21 H 0.104 0.896 22 H 0.130 0.870 23 H 0.139 0.861 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.005 0.995 27 H 0.028 0.972 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.220 0.780 32 H 0.120 0.880 33 H 0.140 0.860 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.270 -5.862 -11.704 13.285 hybrid contribution -1.504 -0.052 1.617 2.210 sum 0.766 -5.914 -10.087 11.718 Atomic orbital electron populations 1.23933 0.96110 1.02054 0.98670 1.23548 0.96946 0.99218 1.01896 1.21362 0.94065 0.95181 0.93641 1.62265 1.14898 1.45124 1.03593 1.19397 0.91804 0.95344 0.84942 1.21363 1.31494 1.01401 1.01268 0.92789 1.25684 0.97482 0.99610 0.96070 1.70030 1.44780 1.34006 1.08196 0.85651 0.78869 0.80127 0.77255 1.19541 1.20957 1.19932 1.20546 0.92080 0.93653 0.94246 1.22243 0.99184 1.04901 0.86302 1.23695 0.95390 1.04167 0.97506 1.74983 1.22972 1.17815 1.01116 1.78133 0.94942 1.14645 1.21698 1.47433 1.17039 1.37654 1.05478 1.22859 0.84360 0.98441 1.01926 0.89577 0.87009 0.86139 0.92118 0.90653 0.99480 0.97238 0.92811 0.88155 0.91939 0.78005 0.87974 0.86031 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.72 14.32 67.78 0.97 -3.75 16 2 C -0.20 -5.49 6.24 25.65 0.16 -5.33 16 3 C 0.09 2.81 5.13 85.56 0.44 3.25 16 4 N -0.54 -20.41 4.61 -909.96 -4.19 -24.61 16 5 C 0.21 10.04 4.59 85.56 0.39 10.44 16 6 C -0.52 -27.63 8.66 25.60 0.22 -27.41 16 7 H 0.05 2.90 7.36 -2.91 -0.02 2.88 16 8 C 0.01 0.54 5.46 84.66 0.46 1.00 16 9 N -0.93 -53.21 13.29 21.45 0.28 -52.93 16 10 Si 0.96 43.09 29.54 68.60 2.03 45.12 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 C 0.12 3.78 5.08 85.55 0.43 4.21 16 15 C 0.01 0.21 5.90 41.36 0.24 0.46 16 16 C -0.05 -1.54 11.99 83.73 1.00 -0.54 16 17 N -0.30 -10.53 12.41 -58.26 -0.72 -11.25 16 18 N -0.12 -3.72 13.17 37.02 0.49 -3.23 16 19 N -0.28 -7.62 3.48 -355.73 -1.24 -8.86 16 20 C 0.06 1.11 9.19 127.77 1.17 2.28 16 21 H 0.09 2.60 7.84 -2.91 -0.02 2.58 16 22 H 0.11 2.58 8.06 -2.91 -0.02 2.56 16 23 H 0.12 2.79 5.26 -2.91 -0.02 2.78 16 24 H 0.06 2.33 6.83 -2.38 -0.02 2.32 16 25 H 0.08 2.20 4.44 -2.39 -0.01 2.19 16 26 H -0.01 -0.62 6.75 -2.39 -0.02 -0.64 16 27 H 0.01 0.49 7.74 -2.39 -0.02 0.48 16 28 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.10 3.05 7.75 -2.39 -0.02 3.03 16 30 H 0.06 1.64 5.32 -2.39 -0.01 1.63 16 31 H 0.20 5.43 8.06 -2.91 -0.02 5.40 16 32 H 0.10 1.68 6.78 -2.39 -0.02 1.66 16 33 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.11 1.68 4.84 -2.39 -0.01 1.67 16 Total: -1.00 -65.20 277.84 3.25 -61.95 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.10 Total: 9.17 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 5.50 Total: -15.37 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -5.38 Total: -100.87 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -65.20 3.25 -61.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292184041.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.677 kcal (2) G-P(sol) polarization free energy of solvation -65.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds