Wall clock time and date at job start Sun Mar 29 2020 21:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50692 * 119.99944 * 2 1 4 4 N 1.46903 * 109.47311 * 123.98445 * 3 2 1 5 5 C 1.46902 * 110.99516 * 62.95378 * 4 3 2 6 6 C 1.50698 * 109.47191 * 66.04860 * 5 4 3 7 7 H 1.07997 * 120.00342 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99776 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00061 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99883 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47068 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46926 * 120.00129 * 10 8 6 13 13 H 1.48499 * 109.47077 * 239.99973 * 10 8 6 14 14 C 1.46898 * 110.99958 * 299.00305 * 4 3 2 15 15 C 1.50704 * 109.46887 * 289.25707 * 14 4 3 16 16 N 1.30834 * 125.95894 * 93.00392 * 15 14 4 17 17 C 1.33241 * 109.82482 * 179.97438 * 16 15 14 18 18 N 1.30709 * 108.95119 * 359.97438 * 17 16 15 19 19 N 1.34427 * 125.95922 * 272.97732 * 15 14 4 20 20 C 1.46497 * 126.82789 * 0.02562 * 19 15 14 21 21 H 1.07994 * 120.00139 * 359.97438 * 1 2 3 22 22 H 1.07999 * 119.99688 * 180.02562 * 1 2 3 23 23 H 1.08002 * 119.99697 * 180.02562 * 2 1 3 24 24 H 1.08995 * 109.47385 * 3.98546 * 3 2 1 25 25 H 1.09009 * 109.47347 * 243.98307 * 3 2 1 26 26 H 1.09007 * 109.46856 * 186.04489 * 5 4 3 27 27 H 1.09002 * 109.47452 * 306.04294 * 5 4 3 28 28 H 0.97009 * 120.00193 * 180.02562 * 9 8 6 29 29 H 1.08998 * 109.46963 * 169.25652 * 14 4 3 30 30 H 1.08998 * 109.47297 * 49.25817 * 14 4 3 31 31 H 1.07997 * 125.52438 * 179.73712 * 17 16 15 32 32 H 1.08994 * 109.47494 * 89.99657 * 20 19 15 33 33 H 1.08995 * 109.47137 * 210.00147 * 20 19 15 34 34 H 1.08997 * 109.46490 * 329.99971 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9788 1.3421 1.1484 5 6 3.9906 0.2816 1.0495 6 6 4.8866 0.5508 -0.1319 7 1 4.7208 1.4222 -0.7479 8 6 5.9181 -0.3154 -0.4263 9 7 6.1197 -1.3769 0.3235 10 14 7.0283 0.0179 -1.8912 11 1 6.5939 1.2664 -2.5676 12 1 8.4302 0.1698 -1.4253 13 1 6.9439 -1.1174 -2.8447 14 6 2.2394 1.2477 2.4142 15 6 1.4799 2.5281 2.6489 16 7 0.2406 2.7612 2.3001 17 6 -0.1067 3.9951 2.6637 18 7 0.9111 4.5666 3.2518 19 7 1.9574 3.6297 3.2534 20 6 3.3018 3.8158 3.8049 21 1 -0.5400 0.9352 0.0004 22 1 -0.5399 -0.9353 0.0004 23 1 1.8500 -0.9354 -0.0004 24 1 1.3574 2.1323 0.0714 25 1 2.6356 1.3944 -0.9236 26 1 4.5875 0.2628 1.9614 27 1 3.4964 -0.6811 0.9188 28 1 6.8456 -1.9862 0.1166 29 1 2.9402 1.0857 3.2331 30 1 1.5392 0.4138 2.3647 31 1 -1.0714 4.4506 2.4958 32 1 3.9580 4.2201 3.0342 33 1 3.2573 4.5093 4.6446 34 1 3.6904 2.8564 4.1462 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292383275.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:14 Heat of formation + Delta-G solvation = 119.401300 kcal Electronic energy + Delta-G solvation = -16829.989742 eV Core-core repulsion = 14186.861821 eV Total energy + Delta-G solvation = -2643.127921 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.80310 -37.44875 -33.82886 -32.94385 -32.40264 -31.02788 -27.91074 -26.88746 -26.33018 -23.94097 -21.70811 -21.32262 -20.11068 -18.71433 -16.72428 -16.29399 -15.88611 -14.98167 -14.83593 -14.46857 -14.40406 -13.80985 -13.37522 -13.03517 -12.87453 -12.78474 -12.15218 -11.58819 -11.37985 -11.33434 -10.86339 -10.78930 -10.69530 -10.50730 -9.99660 -9.72459 -9.44049 -9.40299 -9.27248 -8.75054 -8.51389 -7.42786 -6.10724 -4.11870 1.87462 2.59024 2.86481 3.20719 3.26654 3.34862 3.39592 4.33389 4.43152 4.72987 5.04480 5.09474 5.26159 5.29397 5.39037 5.59495 5.62244 5.82501 5.90791 5.97728 6.20012 6.48392 6.51607 6.65546 6.71487 7.00801 7.04386 7.19895 7.29645 7.37725 7.70025 7.92514 8.04456 8.39111 8.40051 8.95273 9.52692 10.99988 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.027729 B = 0.007096 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.529205 B = 3944.747328 C = 4500.081681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.172 4.172 3 C 0.088 3.912 4 N -0.525 5.525 5 C 0.191 3.809 6 C -0.506 4.506 7 H 0.064 0.936 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.122 3.878 15 C 0.306 3.694 16 N -0.544 5.544 17 C 0.191 3.809 18 N -0.336 5.336 19 N -0.371 5.371 20 C 0.101 3.899 21 H 0.096 0.904 22 H 0.084 0.916 23 H 0.110 0.890 24 H 0.064 0.936 25 H 0.089 0.911 26 H 0.030 0.970 27 H 0.003 0.997 28 H 0.261 0.739 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.211 0.789 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.744 6.075 5.038 11.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.191 4.191 3 C -0.039 4.039 4 N -0.249 5.249 5 C 0.067 3.933 6 C -0.545 4.545 7 H 0.082 0.918 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.724 3.276 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.009 4.009 15 C 0.029 3.971 16 N -0.273 5.273 17 C -0.112 4.112 18 N -0.164 5.164 19 N -0.161 5.161 20 C -0.042 4.042 21 H 0.114 0.886 22 H 0.103 0.897 23 H 0.128 0.872 24 H 0.082 0.918 25 H 0.107 0.893 26 H 0.048 0.952 27 H 0.021 0.979 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.228 0.772 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.475 6.906 5.224 11.440 hybrid contribution 0.435 -0.794 -0.731 1.163 sum -7.040 6.113 4.494 10.350 Atomic orbital electron populations 1.23733 0.95936 1.00974 1.02498 1.23731 0.96255 1.00839 0.98319 1.21271 0.93895 0.93259 0.95504 1.62417 1.13006 1.50877 0.98611 1.19823 0.88292 0.87133 0.98088 1.21131 1.12742 1.08990 1.11635 0.91812 1.24952 0.97564 0.95018 0.96880 1.69954 1.31524 1.13333 1.38880 0.86462 0.80403 0.78244 0.82455 1.19674 1.21020 1.21061 1.20583 0.95840 0.88534 0.95981 1.24444 0.90129 0.91209 0.91299 1.70518 1.12088 1.17489 1.27174 1.25838 0.98909 0.90127 0.96286 1.77940 0.96842 1.14950 1.26711 1.50157 1.11831 1.10116 1.43963 1.21919 0.78279 1.04119 0.99856 0.88564 0.89745 0.87239 0.91770 0.89255 0.95176 0.97906 0.92904 0.89365 0.91217 0.77230 0.89674 0.89709 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.10 14.32 29.01 0.42 -2.69 16 2 C -0.17 -3.14 7.46 -36.03 -0.27 -3.41 16 3 C 0.09 1.72 5.47 -4.98 -0.03 1.70 16 4 N -0.53 -10.58 4.66 -238.96 -1.11 -11.69 16 5 C 0.19 4.55 4.55 -4.98 -0.02 4.53 16 6 C -0.51 -13.39 8.47 -34.44 -0.29 -13.68 16 7 H 0.06 1.70 7.12 -52.49 -0.37 1.33 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -25.39 13.29 55.43 0.74 -24.66 16 10 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.12 2.10 5.12 -4.98 -0.03 2.08 16 15 C 0.31 5.18 6.73 -155.69 -1.05 4.13 16 16 N -0.54 -9.19 10.68 -11.97 -0.13 -9.32 16 17 C 0.19 2.86 13.03 -91.82 -1.20 1.67 16 18 N -0.34 -5.41 12.70 29.29 0.37 -5.03 16 19 N -0.37 -5.86 4.04 -65.10 -0.26 -6.13 16 20 C 0.10 1.22 11.33 59.85 0.68 1.90 16 21 H 0.10 1.53 7.84 -52.49 -0.41 1.12 16 22 H 0.08 1.22 8.06 -52.49 -0.42 0.80 16 23 H 0.11 2.18 6.77 -52.49 -0.36 1.83 16 24 H 0.06 1.23 6.67 -51.93 -0.35 0.88 16 25 H 0.09 1.89 6.78 -51.92 -0.35 1.54 16 26 H 0.03 0.75 7.87 -51.93 -0.41 0.35 16 27 H 0.00 0.08 6.28 -51.93 -0.33 -0.25 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 29 H 0.09 1.39 6.91 -51.93 -0.36 1.03 16 30 H 0.07 1.23 6.79 -51.93 -0.35 0.87 16 31 H 0.21 2.25 8.06 -52.49 -0.42 1.82 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 1.01 7.17 -51.93 -0.37 0.64 16 LS Contribution 289.06 15.07 4.36 4.36 Total: -1.00 -30.07 289.06 -7.43 -37.50 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -4.48 Total: 1.37 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -1.88 Total: -2.33 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.40 Total: -56.83 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.07 -7.43 -37.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292383275.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.902 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds