Wall clock time and date at job start Sun Mar 29 2020 21:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50692 * 119.99944 * 2 1 4 4 N 1.46903 * 109.47311 * 123.98445 * 3 2 1 5 5 C 1.46902 * 110.99516 * 62.95378 * 4 3 2 6 6 C 1.50698 * 109.47191 * 66.04860 * 5 4 3 7 7 H 1.07997 * 120.00342 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99776 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00061 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99883 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47068 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46926 * 120.00129 * 10 8 6 13 13 H 1.48499 * 109.47077 * 239.99973 * 10 8 6 14 14 C 1.46898 * 110.99958 * 299.00305 * 4 3 2 15 15 C 1.50704 * 109.46887 * 289.25707 * 14 4 3 16 16 N 1.30834 * 125.95894 * 93.00392 * 15 14 4 17 17 C 1.33241 * 109.82482 * 179.97438 * 16 15 14 18 18 N 1.30709 * 108.95119 * 359.97438 * 17 16 15 19 19 N 1.34427 * 125.95922 * 272.97732 * 15 14 4 20 20 C 1.46497 * 126.82789 * 0.02562 * 19 15 14 21 21 H 1.07994 * 120.00139 * 359.97438 * 1 2 3 22 22 H 1.07999 * 119.99688 * 180.02562 * 1 2 3 23 23 H 1.08002 * 119.99697 * 180.02562 * 2 1 3 24 24 H 1.08995 * 109.47385 * 3.98546 * 3 2 1 25 25 H 1.09009 * 109.47347 * 243.98307 * 3 2 1 26 26 H 1.09007 * 109.46856 * 186.04489 * 5 4 3 27 27 H 1.09002 * 109.47452 * 306.04294 * 5 4 3 28 28 H 0.97009 * 120.00193 * 180.02562 * 9 8 6 29 29 H 1.08998 * 109.46963 * 169.25652 * 14 4 3 30 30 H 1.08998 * 109.47297 * 49.25817 * 14 4 3 31 31 H 1.07997 * 125.52438 * 179.73712 * 17 16 15 32 32 H 1.08994 * 109.47494 * 89.99657 * 20 19 15 33 33 H 1.08995 * 109.47137 * 210.00147 * 20 19 15 34 34 H 1.08997 * 109.46490 * 329.99971 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9788 1.3421 1.1484 5 6 3.9906 0.2816 1.0495 6 6 4.8866 0.5508 -0.1319 7 1 4.7208 1.4222 -0.7479 8 6 5.9181 -0.3154 -0.4263 9 7 6.1197 -1.3769 0.3235 10 14 7.0283 0.0179 -1.8912 11 1 6.5939 1.2664 -2.5676 12 1 8.4302 0.1698 -1.4253 13 1 6.9439 -1.1174 -2.8447 14 6 2.2394 1.2477 2.4142 15 6 1.4799 2.5281 2.6489 16 7 0.2406 2.7612 2.3001 17 6 -0.1067 3.9951 2.6637 18 7 0.9111 4.5666 3.2518 19 7 1.9574 3.6297 3.2534 20 6 3.3018 3.8158 3.8049 21 1 -0.5400 0.9352 0.0004 22 1 -0.5399 -0.9353 0.0004 23 1 1.8500 -0.9354 -0.0004 24 1 1.3574 2.1323 0.0714 25 1 2.6356 1.3944 -0.9236 26 1 4.5875 0.2628 1.9614 27 1 3.4964 -0.6811 0.9188 28 1 6.8456 -1.9862 0.1166 29 1 2.9402 1.0857 3.2331 30 1 1.5392 0.4138 2.3647 31 1 -1.0714 4.4506 2.4958 32 1 3.9580 4.2201 3.0342 33 1 3.2573 4.5093 4.6446 34 1 3.6904 2.8564 4.1462 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292383275.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:13 Heat of formation + Delta-G solvation = 100.720110 kcal Electronic energy + Delta-G solvation = -16830.799819 eV Core-core repulsion = 14186.861821 eV Total energy + Delta-G solvation = -2643.937998 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.02129 -39.03732 -34.98693 -34.89102 -33.84234 -32.46642 -29.50889 -28.30694 -27.68988 -25.71034 -22.99715 -22.87344 -21.42788 -20.20592 -18.40092 -17.81262 -17.25626 -16.68125 -16.33004 -15.97772 -15.66729 -15.34821 -14.82467 -14.43182 -14.02504 -13.95725 -13.91784 -13.23291 -12.94316 -12.69294 -12.62426 -12.58463 -12.24527 -12.15817 -11.83484 -11.34579 -10.97094 -10.65954 -10.59423 -10.51927 -10.16930 -9.08626 -8.17839 -6.25299 0.62955 1.41603 1.43874 1.45731 1.48001 1.55598 1.98836 2.42663 3.10473 3.16428 3.54334 3.67715 3.88720 4.13871 4.26267 4.32020 4.39393 4.54237 4.64839 4.69875 4.73978 5.01825 5.10363 5.23608 5.34537 5.36874 5.57171 5.64839 5.81014 5.86094 5.87819 6.09337 6.25644 6.54704 6.88915 7.17699 7.43350 8.92861 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.027729 B = 0.007096 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.529205 B = 3944.747328 C = 4500.081681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.196 4.196 3 C 0.098 3.902 4 N -0.529 5.529 5 C 0.209 3.791 6 C -0.517 4.517 7 H 0.057 0.943 8 C 0.009 3.991 9 N -0.929 5.929 10 Si 0.959 3.041 11 H -0.268 1.268 12 H -0.279 1.279 13 H -0.281 1.281 14 C 0.128 3.872 15 C 0.293 3.707 16 N -0.559 5.559 17 C 0.191 3.809 18 N -0.350 5.350 19 N -0.373 5.373 20 C 0.093 3.907 21 H 0.104 0.896 22 H 0.106 0.894 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.015 0.985 27 H -0.017 1.017 28 H 0.264 0.736 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.248 0.752 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.578 6.937 4.998 12.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.216 4.216 3 C -0.029 4.029 4 N -0.252 5.252 5 C 0.083 3.917 6 C -0.555 4.555 7 H 0.075 0.925 8 C -0.189 4.189 9 N -0.570 5.570 10 Si 0.785 3.215 11 H -0.193 1.193 12 H -0.204 1.204 13 H -0.207 1.207 14 C -0.002 4.002 15 C 0.016 3.984 16 N -0.288 5.288 17 C -0.111 4.111 18 N -0.179 5.179 19 N -0.163 5.163 20 C -0.048 4.048 21 H 0.122 0.878 22 H 0.124 0.876 23 H 0.106 0.894 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.033 0.967 27 H 0.001 0.999 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.264 0.736 32 H 0.100 0.900 33 H 0.126 0.874 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.313 7.786 5.192 12.518 hybrid contribution 0.594 -1.021 -0.680 1.363 sum -7.719 6.766 4.512 11.213 Atomic orbital electron populations 1.23887 0.94899 1.02286 0.98627 1.23436 0.96971 0.99252 1.01911 1.21103 0.93482 0.94178 0.94187 1.62266 1.13494 1.49223 1.00249 1.19445 0.88588 0.87249 0.96423 1.21403 1.13213 1.08645 1.12287 0.92457 1.25716 0.98981 0.94828 0.99395 1.70054 1.32277 1.14209 1.40476 0.85485 0.78604 0.78130 0.79306 1.19254 1.20440 1.20721 1.20490 0.95855 0.89094 0.94789 1.24207 0.90509 0.91328 0.92328 1.70490 1.12179 1.18570 1.27566 1.26592 0.99986 0.89380 0.95127 1.77919 0.97263 1.15380 1.27335 1.50389 1.12704 1.09666 1.43524 1.22174 0.76795 1.05407 1.00428 0.87806 0.87606 0.89357 0.91194 0.91640 0.96671 0.99906 0.92746 0.88185 0.91438 0.73617 0.90026 0.87432 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.80 14.32 67.77 0.97 -3.83 16 2 C -0.20 -7.13 7.46 25.64 0.19 -6.94 16 3 C 0.10 3.84 5.47 85.55 0.47 4.31 16 4 N -0.53 -21.45 4.66 -909.93 -4.24 -25.68 16 5 C 0.21 10.17 4.55 85.56 0.39 10.56 16 6 C -0.52 -27.77 8.47 25.60 0.22 -27.55 16 7 H 0.06 3.09 7.12 -2.91 -0.02 3.07 16 8 C 0.01 0.50 5.46 84.66 0.46 0.96 16 9 N -0.93 -53.23 13.29 21.45 0.28 -52.95 16 10 Si 0.96 43.09 29.54 68.60 2.03 45.11 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 12 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 13 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 14 C 0.13 4.38 5.12 85.56 0.44 4.82 16 15 C 0.29 9.56 6.73 138.23 0.93 10.49 16 16 N -0.56 -17.86 10.68 -191.78 -2.05 -19.91 16 17 C 0.19 5.28 13.03 180.77 2.36 7.63 16 18 N -0.35 -10.59 12.70 -61.25 -0.78 -11.37 16 19 N -0.37 -11.24 4.04 -359.89 -1.45 -12.69 16 20 C 0.09 2.13 11.33 127.77 1.45 3.58 16 21 H 0.10 3.03 7.84 -2.91 -0.02 3.00 16 22 H 0.11 2.76 8.06 -2.91 -0.02 2.74 16 23 H 0.09 3.61 6.77 -2.91 -0.02 3.59 16 24 H 0.07 2.64 6.67 -2.39 -0.02 2.62 16 25 H 0.07 2.83 6.78 -2.38 -0.02 2.82 16 26 H 0.02 0.78 7.87 -2.38 -0.02 0.76 16 27 H -0.02 -0.88 6.28 -2.39 -0.01 -0.89 16 28 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 29 H 0.10 3.11 6.91 -2.39 -0.02 3.10 16 30 H 0.07 2.34 6.79 -2.39 -0.02 2.33 16 31 H 0.25 4.47 8.06 -2.91 -0.02 4.44 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.10 2.12 7.17 -2.39 -0.02 2.10 16 Total: -1.00 -63.46 289.06 2.75 -60.72 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 1.09 Total: 12.73 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 7.87 Total: 4.03 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -8.23 Total: -122.60 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -63.46 2.75 -60.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292383275.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.436 kcal (2) G-P(sol) polarization free energy of solvation -63.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds