Wall clock time and date at job start Sun Mar 29 2020 22:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38506 * 120.82371 * 2 1 4 4 Cl 1.73598 * 120.26013 * 359.95121 * 3 2 1 5 5 C 1.38509 * 119.48949 * 179.97438 * 3 2 1 6 6 N 1.31835 * 121.20944 * 359.97438 * 5 3 2 7 7 C 1.32430 * 121.79292 * 359.97438 * 6 5 3 8 8 N 1.38325 * 119.81097 * 180.02562 * 7 6 5 9 9 C 1.36871 * 120.00165 * 0.02562 * 8 7 6 10 10 H 1.07999 * 120.00119 * 359.97438 * 9 8 7 11 11 C 1.38855 * 119.99633 * 180.02562 * 9 8 7 12 12 N 1.31523 * 120.00456 * 359.71830 * 11 9 8 13 13 Si 1.86803 * 119.99568 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47085 * 89.99634 * 13 11 9 15 15 H 1.48505 * 109.46880 * 209.99465 * 13 11 9 16 16 H 1.48490 * 109.47245 * 329.99792 * 13 11 9 17 17 C 1.39936 * 120.81922 * 180.24762 * 2 1 3 18 18 C 1.43193 * 120.61176 * 0.02562 * 17 2 1 19 19 N 3.49463 * 81.59061 * 180.25914 * 2 1 3 20 20 H 1.09004 * 109.46659 * 90.00282 * 1 2 3 21 21 H 1.08995 * 109.47627 * 210.00066 * 1 2 3 22 22 H 1.09003 * 109.46817 * 330.00810 * 1 2 3 23 23 H 1.07995 * 119.39849 * 179.97438 * 5 3 2 24 24 H 0.96999 * 119.99710 * 179.97438 * 8 7 6 25 25 H 0.97000 * 120.00436 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1894 0.0000 4 17 1.3773 2.7090 -0.0013 5 6 3.6015 1.1572 0.0005 6 7 4.2581 0.0140 0.0016 7 6 3.6297 -1.1517 0.0026 8 7 4.3597 -2.3265 0.0042 9 6 5.7277 -2.2822 0.0052 10 1 6.2372 -1.3299 0.0043 11 6 6.4605 -3.4617 0.0062 12 7 5.8401 -4.6214 0.0119 13 14 8.3275 -3.4012 0.0069 14 1 8.8218 -3.3841 1.4071 15 1 8.8618 -4.5976 -0.6921 16 1 8.7833 -2.1739 -0.6938 17 6 2.2240 -1.2017 -0.0052 18 6 1.5392 -2.4593 -0.0112 19 7 0.9960 -3.4570 -0.0156 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8901 0.5137 23 1 4.1533 2.0854 0.0001 24 1 3.9022 -3.1818 0.0053 25 1 6.3520 -5.4453 0.0130 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306217869.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:51 Heat of formation + Delta-G solvation = 47.213161 kcal Electronic energy + Delta-G solvation = -13761.374549 eV Core-core repulsion = 11186.440628 eV Total energy + Delta-G solvation = -2574.933920 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.036 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.61488 -36.33005 -35.81944 -35.36724 -33.09511 -32.27673 -29.04963 -27.46889 -25.07587 -23.51074 -20.90870 -18.72711 -17.87159 -16.81777 -15.95516 -14.89310 -14.56560 -14.34181 -13.84407 -13.30422 -12.84614 -12.55345 -12.41175 -12.31696 -11.99456 -11.91766 -11.79868 -11.39220 -11.30697 -10.80962 -10.59105 -10.52202 -10.34337 -9.05139 -8.80608 -8.71954 -7.31282 -6.99951 -4.13590 1.47352 1.98295 2.82093 2.99727 3.00785 3.06435 3.42781 3.71059 3.75932 4.40131 4.45712 4.75653 4.92796 5.16339 5.26802 5.68161 5.82028 5.94816 6.04420 6.32464 6.44724 6.68168 6.95172 7.06850 7.45625 8.21132 8.24211 8.55390 8.79869 9.23363 10.12868 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.031608 B = 0.007276 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.631397 B = 3847.147163 C = 4717.621733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.077 3.923 3 C -0.229 4.229 4 Cl -0.095 7.095 5 C 0.211 3.789 6 N -0.523 5.523 7 C 0.360 3.640 8 N -0.485 5.485 9 C -0.285 4.285 10 H 0.127 0.873 11 C 0.023 3.977 12 N -0.865 5.865 13 Si 0.947 3.053 14 H -0.271 1.271 15 H -0.278 1.278 16 H -0.261 1.261 17 C -0.212 4.212 18 C 0.276 3.724 19 N -0.465 5.465 20 H 0.078 0.922 21 H 0.065 0.935 22 H 0.078 0.922 23 H 0.152 0.848 24 H 0.410 0.590 25 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.298 9.139 -0.040 9.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.067 3.933 3 C -0.264 4.264 4 Cl -0.067 7.067 5 C 0.036 3.964 6 N -0.240 5.240 7 C 0.112 3.888 8 N -0.082 5.082 9 C -0.416 4.416 10 H 0.145 0.855 11 C -0.185 4.185 12 N -0.498 5.498 13 Si 0.771 3.229 14 H -0.196 1.196 15 H -0.203 1.203 16 H -0.185 1.185 17 C -0.227 4.227 18 C -0.036 4.036 19 N -0.144 5.144 20 H 0.097 0.903 21 H 0.084 0.916 22 H 0.097 0.903 23 H 0.169 0.831 24 H 0.248 0.752 25 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.900 7.119 -0.047 7.688 hybrid contribution -0.103 -0.010 0.004 0.104 sum -3.004 7.109 -0.043 7.718 Atomic orbital electron populations 1.20896 0.90846 1.03180 1.02965 1.19473 0.95193 0.89792 0.88793 1.20684 0.92884 0.85251 1.27603 1.98254 1.78767 1.31634 1.98088 1.22292 0.89063 0.95603 0.89408 1.67342 1.37947 0.96317 1.22394 1.17784 0.85467 0.86982 0.98569 1.41219 1.07088 1.04581 1.55307 1.20305 0.80178 0.95871 1.45252 0.85546 1.25712 1.02729 0.94319 0.95749 1.69675 1.38354 0.98334 1.43430 0.85571 0.79482 0.78726 0.79078 1.19598 1.20344 1.18457 1.15479 0.90775 0.86470 1.30012 1.25408 0.93191 0.92575 0.92394 1.81158 1.08892 1.10662 1.13690 0.90298 0.91561 0.90304 0.83115 0.75240 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.73 9.29 36.01 0.33 -1.40 15 2 C 0.08 1.33 5.95 -103.89 -0.62 0.71 15 3 C -0.23 -3.74 6.33 -39.38 -0.25 -3.99 15 4 Cl -0.10 -1.31 27.44 -51.86 -1.42 -2.74 15 5 C 0.21 3.60 10.96 -17.45 -0.19 3.41 15 6 N -0.52 -10.77 9.07 -12.12 -0.11 -10.88 15 7 C 0.36 7.88 7.44 -155.07 -1.15 6.73 15 8 N -0.49 -11.62 5.33 -10.93 -0.06 -11.68 15 9 C -0.28 -6.95 9.70 -15.07 -0.15 -7.10 15 10 H 0.13 3.03 7.07 -52.49 -0.37 2.65 15 11 C 0.02 0.54 5.50 -17.46 -0.10 0.45 15 12 N -0.87 -21.84 13.05 55.49 0.72 -21.12 15 13 Si 0.95 18.48 29.55 -169.99 -5.02 13.46 15 14 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 15 H -0.28 -5.40 7.11 56.52 0.40 -5.00 15 16 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 17 C -0.21 -4.22 5.77 -106.42 -0.61 -4.84 15 18 C 0.28 5.71 12.73 -22.48 -0.29 5.43 15 19 N -0.46 -10.09 18.54 41.84 0.78 -9.32 15 20 H 0.08 1.03 8.14 -51.93 -0.42 0.60 15 21 H 0.07 0.96 7.20 -51.93 -0.37 0.58 15 22 H 0.08 1.00 7.01 -51.93 -0.36 0.63 15 23 H 0.15 2.11 8.06 -52.49 -0.42 1.68 15 24 H 0.41 10.20 6.73 -40.82 -0.27 9.92 15 25 H 0.29 6.73 8.31 -40.82 -0.34 6.39 15 LS Contribution 250.51 15.07 3.78 3.78 Total: -1.00 -25.31 250.51 -5.73 -31.03 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -1.36 Total: 8.07 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -3.02 Total: -0.60 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 1.33 Total: -53.00 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.46 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.42 Total: -2.74 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -25.31 -5.73 -31.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306217869.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.247 kcal (2) G-P(sol) polarization free energy of solvation -25.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds