Wall clock time and date at job start Sun Mar 29 2020 22:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38506 * 120.82371 * 2 1 4 4 Cl 1.73598 * 120.26013 * 359.95121 * 3 2 1 5 5 C 1.38509 * 119.48949 * 179.97438 * 3 2 1 6 6 N 1.31835 * 121.20944 * 359.97438 * 5 3 2 7 7 C 1.32430 * 121.79292 * 359.97438 * 6 5 3 8 8 N 1.38325 * 119.81097 * 180.02562 * 7 6 5 9 9 C 1.36871 * 120.00165 * 0.02562 * 8 7 6 10 10 H 1.07999 * 120.00119 * 359.97438 * 9 8 7 11 11 C 1.38855 * 119.99633 * 180.02562 * 9 8 7 12 12 N 1.31523 * 120.00456 * 359.71830 * 11 9 8 13 13 Si 1.86803 * 119.99568 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47085 * 89.99634 * 13 11 9 15 15 H 1.48505 * 109.46880 * 209.99465 * 13 11 9 16 16 H 1.48490 * 109.47245 * 329.99792 * 13 11 9 17 17 C 1.39936 * 120.81922 * 180.24762 * 2 1 3 18 18 C 1.43193 * 120.61176 * 0.02562 * 17 2 1 19 19 N 3.49463 * 81.59061 * 180.25914 * 2 1 3 20 20 H 1.09004 * 109.46659 * 90.00282 * 1 2 3 21 21 H 1.08995 * 109.47627 * 210.00066 * 1 2 3 22 22 H 1.09003 * 109.46817 * 330.00810 * 1 2 3 23 23 H 1.07995 * 119.39849 * 179.97438 * 5 3 2 24 24 H 0.96999 * 119.99710 * 179.97438 * 8 7 6 25 25 H 0.97000 * 120.00436 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1894 0.0000 4 17 1.3773 2.7090 -0.0013 5 6 3.6015 1.1572 0.0005 6 7 4.2581 0.0140 0.0016 7 6 3.6297 -1.1517 0.0026 8 7 4.3597 -2.3265 0.0042 9 6 5.7277 -2.2822 0.0052 10 1 6.2372 -1.3299 0.0043 11 6 6.4605 -3.4617 0.0062 12 7 5.8401 -4.6214 0.0119 13 14 8.3275 -3.4012 0.0069 14 1 8.8218 -3.3841 1.4071 15 1 8.8618 -4.5976 -0.6921 16 1 8.7833 -2.1739 -0.6938 17 6 2.2240 -1.2017 -0.0052 18 6 1.5392 -2.4593 -0.0112 19 7 0.9960 -3.4570 -0.0156 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8901 0.5137 23 1 4.1533 2.0854 0.0001 24 1 3.9022 -3.1818 0.0053 25 1 6.3520 -5.4453 0.0130 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306217869.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:51 Heat of formation + Delta-G solvation = 33.534038 kcal Electronic energy + Delta-G solvation = -13761.967720 eV Core-core repulsion = 11186.440628 eV Total energy + Delta-G solvation = -2575.527091 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.036 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.20893 -37.81754 -37.49359 -36.82080 -34.59319 -33.93105 -30.65047 -28.84449 -26.77826 -25.03826 -22.44512 -20.41090 -19.45825 -18.39330 -17.55954 -16.44809 -16.06558 -15.88033 -15.43859 -14.81214 -14.21784 -14.17765 -14.00292 -13.69101 -13.62765 -13.47174 -13.21552 -12.79116 -12.71941 -12.51079 -12.10182 -11.85523 -11.78757 -10.70565 -10.29978 -10.25849 -8.90609 -8.68648 -5.94869 -0.06360 0.48118 1.39195 1.42584 1.48079 1.57008 1.78829 2.08179 2.18522 2.76453 2.82124 3.14278 3.26274 3.75982 3.89118 4.26804 4.54019 4.59070 4.71343 4.90786 5.06510 5.23713 5.28698 5.48673 5.80347 6.49471 6.57999 6.89791 7.12637 7.56703 8.46966 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.031608 B = 0.007276 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.631397 B = 3847.147163 C = 4717.621733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.079 3.921 3 C -0.210 4.210 4 Cl -0.058 7.058 5 C 0.214 3.786 6 N -0.550 5.550 7 C 0.372 3.628 8 N -0.521 5.521 9 C -0.309 4.309 10 H 0.123 0.877 11 C -0.023 4.023 12 N -0.916 5.916 13 Si 1.010 2.990 14 H -0.268 1.268 15 H -0.279 1.279 16 H -0.254 1.254 17 C -0.223 4.223 18 C 0.286 3.714 19 N -0.486 5.486 20 H 0.096 0.904 21 H 0.062 0.938 22 H 0.099 0.901 23 H 0.188 0.812 24 H 0.400 0.600 25 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.295 12.110 -0.094 12.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.069 3.931 3 C -0.245 4.245 4 Cl -0.029 7.029 5 C 0.044 3.956 6 N -0.268 5.268 7 C 0.126 3.874 8 N -0.121 5.121 9 C -0.439 4.439 10 H 0.141 0.859 11 C -0.225 4.225 12 N -0.552 5.552 13 Si 0.832 3.168 14 H -0.194 1.194 15 H -0.204 1.204 16 H -0.177 1.177 17 C -0.238 4.238 18 C -0.026 4.026 19 N -0.165 5.165 20 H 0.115 0.885 21 H 0.081 0.919 22 H 0.118 0.882 23 H 0.205 0.795 24 H 0.235 0.765 25 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.929 10.195 -0.100 10.927 hybrid contribution -0.166 -0.483 0.021 0.511 sum -4.094 9.713 -0.079 10.541 Atomic orbital electron populations 1.20990 0.88282 1.04080 1.04335 1.19858 0.97019 0.88924 0.87276 1.20891 0.93027 0.86690 1.23861 1.98286 1.77934 1.28907 1.97808 1.22972 0.89828 0.95784 0.87026 1.67426 1.38870 0.96750 1.23768 1.18233 0.86198 0.87222 0.95764 1.41187 1.07020 1.04499 1.59370 1.20368 0.80719 0.95918 1.46902 0.85895 1.26517 1.06597 0.93781 0.95558 1.69772 1.39534 0.98775 1.47107 0.84649 0.74602 0.78632 0.78945 1.19365 1.20424 1.17711 1.15700 0.90280 0.87264 1.30575 1.25529 0.92674 0.92543 0.91804 1.81154 1.09923 1.11038 1.14378 0.88526 0.91885 0.88205 0.79475 0.76503 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.96 9.29 71.24 0.66 -2.30 15 2 C 0.08 2.49 5.95 -19.39 -0.12 2.37 15 3 C -0.21 -6.05 6.33 22.40 0.14 -5.90 15 4 Cl -0.06 -1.30 27.44 -2.72 -0.07 -1.38 15 5 C 0.21 6.62 10.96 84.76 0.93 7.55 15 6 N -0.55 -21.94 9.07 -192.26 -1.74 -23.68 15 7 C 0.37 16.25 7.44 133.66 0.99 17.24 15 8 N -0.52 -25.81 5.33 -188.51 -1.01 -26.82 15 9 C -0.31 -15.63 9.70 84.05 0.82 -14.81 15 10 H 0.12 6.05 7.07 -2.91 -0.02 6.03 15 11 C -0.02 -1.13 5.50 84.89 0.47 -0.67 15 12 N -0.92 -48.75 13.05 21.65 0.28 -48.47 15 13 Si 1.01 39.07 29.55 68.60 2.03 41.10 15 14 H -0.27 -10.11 7.11 99.48 0.71 -9.40 15 15 H -0.28 -10.63 7.11 99.48 0.71 -9.93 15 16 H -0.25 -9.31 7.11 99.48 0.71 -8.60 15 17 C -0.22 -8.65 5.77 -21.03 -0.12 -8.77 15 18 C 0.29 11.79 12.73 88.33 1.12 12.91 15 19 N -0.49 -21.17 18.54 19.00 0.35 -20.82 15 20 H 0.10 2.12 8.14 -2.39 -0.02 2.10 15 21 H 0.06 1.64 7.20 -2.39 -0.02 1.62 15 22 H 0.10 2.05 7.01 -2.39 -0.02 2.04 15 23 H 0.19 4.37 8.06 -2.91 -0.02 4.35 15 24 H 0.40 20.92 6.73 -92.71 -0.62 20.29 15 25 H 0.28 14.14 8.31 -92.71 -0.77 13.37 15 Total: -1.00 -55.94 250.51 5.37 -50.57 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.63 Total: 21.87 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 4.90 Total: 7.63 kcal Atomic # 7 Polarization: -117.67 SS G_CDS: -2.11 Total: -119.78 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.07 Total: -1.38 kcal Total: -55.94 5.37 -50.57 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306217869.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.108 kcal (2) G-P(sol) polarization free energy of solvation -55.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds