Wall clock time and date at job start Sun Mar 29 2020 22:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86800 * 119.99485 * 2 1 4 4 H 1.48503 * 109.47243 * 240.00032 * 3 2 1 5 5 H 1.48494 * 109.47288 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47086 * 119.99969 * 3 2 1 7 7 C 1.40045 * 120.00708 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99512 * 0.02562 * 7 2 1 10 10 O 1.21691 * 120.00355 * 359.71597 * 9 7 2 11 11 N 1.34777 * 119.99803 * 179.97438 * 9 7 2 12 12 C 1.46506 * 120.00264 * 179.97438 * 11 9 7 13 13 C 1.52993 * 109.47556 * 179.97438 * 12 11 9 14 14 H 1.09010 * 115.54630 * 330.67013 * 13 12 11 15 15 C 1.52995 * 117.50215 * 116.37458 * 13 12 11 16 16 C 1.52991 * 59.99986 * 107.48993 * 15 13 12 17 17 Cl 1.80304 * 117.50292 * 252.50962 * 16 15 13 18 18 Cl 1.80301 * 117.49711 * 107.48962 * 16 15 13 19 19 H 0.96991 * 120.00684 * 0.02562 * 1 2 3 20 20 H 0.96999 * 120.00047 * 359.97438 * 11 9 7 21 21 H 1.09001 * 109.46379 * 299.99687 * 12 11 9 22 22 H 1.09000 * 109.47020 * 59.99522 * 12 11 9 23 23 H 1.09005 * 117.50031 * 214.98205 * 15 13 12 24 24 H 1.09001 * 117.49628 * 359.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0943 1.6966 -1.2125 5 1 1.2755 2.7464 0.0006 6 1 3.0943 1.6966 1.2125 7 6 2.0071 -1.2127 0.0005 8 1 3.0871 -1.2127 0.0001 9 6 1.2753 -2.4804 0.0005 10 8 0.0584 -2.4805 0.0053 11 7 1.9492 -3.6476 0.0005 12 6 1.2169 -4.9164 0.0011 13 6 2.2111 -6.0793 0.0003 14 1 3.1679 -5.8793 -0.4822 15 6 2.2130 -7.0080 1.2161 16 6 1.6426 -7.4947 -0.1174 17 17 -0.1479 -7.6649 -0.2447 18 17 2.6068 -8.7047 -1.0432 19 1 -0.4851 0.8399 -0.0004 20 1 2.9192 -3.6475 0.0002 21 1 0.5906 -4.9739 0.8914 22 1 0.5898 -4.9744 -0.8886 23 1 3.1711 -7.4193 1.5339 24 1 1.5061 -6.7903 2.0168 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306475836.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:13 Heat of formation + Delta-G solvation = -55.832339 kcal Electronic energy + Delta-G solvation = -12358.585441 eV Core-core repulsion = 9744.457532 eV Total energy + Delta-G solvation = -2614.127909 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 237.006 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.82973 -38.72046 -37.05984 -36.68016 -34.82226 -34.11231 -29.28032 -26.96996 -23.33136 -22.06620 -21.79313 -19.19362 -17.70229 -17.45376 -16.20718 -15.90089 -15.62374 -15.48934 -14.32652 -14.08951 -13.89449 -13.44050 -13.07044 -12.85781 -12.69038 -12.62034 -12.46560 -12.21323 -12.03810 -11.94143 -11.38813 -10.90038 -10.85177 -9.87312 -9.50262 -8.27684 -6.84229 0.12865 1.13766 1.42830 1.46104 1.57947 2.10824 2.27870 2.48717 2.88097 3.27843 3.50254 3.64966 3.86167 4.16832 4.62380 4.70601 4.74388 4.99179 5.33835 5.88194 6.21116 6.26764 6.88322 7.55259 8.49897 8.68489 Molecular weight = 237.01amu Principal moments of inertia in cm(-1) A = 0.053150 B = 0.005200 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.686736 B = 5383.824687 C = 5719.140905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 0.999 3.001 4 H -0.254 1.254 5 H -0.277 1.277 6 H -0.253 1.253 7 C -0.572 4.572 8 H 0.091 0.909 9 C 0.537 3.463 10 O -0.633 6.633 11 N -0.751 5.751 12 C 0.165 3.835 13 C -0.125 4.125 14 H 0.151 0.849 15 C -0.114 4.114 16 C -0.001 4.001 17 Cl -0.108 7.108 18 Cl -0.092 7.092 19 H 0.274 0.726 20 H 0.399 0.601 21 H 0.044 0.956 22 H 0.038 0.962 23 H 0.153 0.847 24 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.586 -13.263 1.343 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.188 4.188 3 Si 0.818 3.182 4 H -0.178 1.178 5 H -0.202 1.202 6 H -0.177 1.177 7 C -0.608 4.608 8 H 0.109 0.891 9 C 0.341 3.659 10 O -0.520 6.520 11 N -0.407 5.407 12 C 0.040 3.960 13 C -0.144 4.144 14 H 0.168 0.832 15 C -0.151 4.151 16 C -0.053 4.053 17 Cl -0.081 7.081 18 Cl -0.065 7.065 19 H 0.084 0.916 20 H 0.234 0.766 21 H 0.063 0.937 22 H 0.056 0.944 23 H 0.171 0.829 24 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.461 -13.326 1.257 15.325 hybrid contribution 0.125 0.420 -0.296 0.529 sum 7.586 -12.906 0.961 15.002 Atomic orbital electron populations 1.70184 1.09600 1.29023 1.36446 1.27001 0.95511 1.05068 0.91217 0.85052 0.78147 0.74636 0.80335 1.17817 1.20168 1.17675 1.21409 0.94872 0.89879 1.54653 0.89059 1.18630 0.86825 0.84326 0.76088 1.90568 1.16350 1.87941 1.57189 1.45730 1.09449 1.04176 1.81342 1.20416 0.92968 0.82555 1.00022 1.23352 1.01132 0.87493 1.02425 0.83176 1.24265 1.04686 0.96431 0.89755 1.26881 0.80954 0.93855 1.03641 1.98761 1.13050 1.97884 1.98403 1.98740 1.70883 1.60107 1.76770 0.91595 0.76634 0.93742 0.94390 0.82928 0.85743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.32 11.83 21.83 0.26 -50.06 14 2 C 0.03 1.49 5.50 85.30 0.47 1.96 14 3 Si 1.00 40.23 29.56 68.60 2.03 42.25 14 4 H -0.25 -9.60 7.11 99.48 0.71 -8.89 14 5 H -0.28 -10.85 7.11 99.48 0.71 -10.15 14 6 H -0.25 -9.50 7.11 99.48 0.71 -8.79 14 7 C -0.57 -31.74 9.54 24.83 0.24 -31.50 14 8 H 0.09 4.46 7.85 -2.91 -0.02 4.43 14 9 C 0.54 30.73 7.75 86.36 0.67 31.39 14 10 O -0.63 -42.48 15.02 -4.32 -0.06 -42.55 14 11 N -0.75 -32.29 5.55 -467.40 -2.59 -34.89 14 12 C 0.17 6.11 5.04 86.38 0.44 6.55 14 13 C -0.12 -3.07 5.69 -10.80 -0.06 -3.13 14 14 H 0.15 3.14 8.04 -2.38 -0.02 3.12 14 15 C -0.11 -2.13 9.86 30.59 0.30 -1.83 14 16 C 0.00 -0.03 3.62 30.59 0.11 0.08 14 17 Cl -0.11 -2.97 28.23 -2.72 -0.08 -3.04 14 18 Cl -0.09 -1.95 29.29 -2.72 -0.08 -2.03 14 19 H 0.27 15.23 8.29 -92.71 -0.77 14.46 14 20 H 0.40 14.12 8.38 -92.71 -0.78 13.35 14 21 H 0.04 1.77 7.88 -2.39 -0.02 1.76 14 22 H 0.04 1.60 8.02 -2.39 -0.02 1.58 14 23 H 0.15 1.90 8.14 -2.38 -0.02 1.88 14 24 H 0.12 2.36 8.03 -2.39 -0.02 2.34 14 Total: -1.00 -73.80 252.42 2.09 -71.72 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.46 Total: 15.08 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 2.16 Total: 3.51 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -2.34 Total: -84.95 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -0.06 Total: -42.55 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.25 kcal Atomic # 17 Polarization: -4.92 SS G_CDS: -0.16 Total: -5.07 kcal Total: -73.80 2.09 -71.72 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306475836.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.884 kcal (2) G-P(sol) polarization free energy of solvation -73.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds