Wall clock time and date at job start Sun Mar 29 2020 22:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86800 * 119.99839 * 2 1 4 4 H 1.48507 * 109.47028 * 274.97626 * 3 2 1 5 5 H 1.48499 * 109.47288 * 34.98105 * 3 2 1 6 6 H 1.48502 * 109.46913 * 154.98171 * 3 2 1 7 7 C 1.40049 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99645 * 186.12027 * 7 2 1 9 9 C 1.46379 * 119.99677 * 5.84820 * 7 2 1 10 10 O 1.21683 * 120.00200 * 354.23993 * 9 7 2 11 11 N 1.34774 * 119.99548 * 174.24107 * 9 7 2 12 12 C 1.46499 * 120.00008 * 179.97438 * 11 9 7 13 13 C 1.52990 * 109.47401 * 179.97438 * 12 11 9 14 14 H 1.09004 * 115.54966 * 330.66745 * 13 12 11 15 15 C 1.53001 * 117.50258 * 185.00205 * 13 12 11 16 16 C 1.52996 * 59.99921 * 252.50832 * 15 13 12 17 17 Cl 1.80299 * 117.49816 * 252.50704 * 16 15 13 18 18 Cl 1.80305 * 117.50004 * 107.48913 * 16 15 13 19 19 H 0.96994 * 119.99806 * 0.02562 * 1 2 3 20 20 H 0.96998 * 120.00269 * 359.97438 * 11 9 7 21 21 H 1.09001 * 109.46991 * 300.00163 * 12 11 9 22 22 H 1.09007 * 109.46799 * 59.99535 * 12 11 9 23 23 H 1.09000 * 117.49511 * 0.02562 * 15 13 12 24 24 H 1.08999 * 117.50522 * 144.99658 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3830 2.1072 -1.3949 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4121 0.5921 7 6 2.0070 -1.2129 0.0005 8 1 3.0824 -1.2154 0.1003 9 6 1.2808 -2.4773 -0.1281 10 8 0.0640 -2.4826 -0.1300 11 7 1.9600 -3.6355 -0.2444 12 6 1.2332 -4.9011 -0.3725 13 6 2.2326 -6.0536 -0.4886 14 1 3.1890 -5.8022 -0.9471 15 6 1.6706 -7.4526 -0.7491 16 6 2.2372 -7.1000 0.6276 17 17 3.8244 -7.8229 1.0846 18 17 1.0643 -6.8804 1.9793 19 1 -0.4849 0.8400 -0.0004 20 1 2.9299 -3.6313 -0.2432 21 1 0.6062 -5.0506 0.5064 22 1 0.6074 -4.8720 -1.2646 23 1 0.5887 -7.5518 -0.8382 24 1 2.2571 -8.1215 -1.3789 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306475837.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:14 Heat of formation + Delta-G solvation = -31.459766 kcal Electronic energy + Delta-G solvation = -12429.945286 eV Core-core repulsion = 9816.874251 eV Total energy + Delta-G solvation = -2613.071035 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 237.006 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.43338 -36.96438 -36.01514 -35.47335 -32.87628 -32.07962 -27.37526 -25.15300 -22.37860 -20.79946 -19.76582 -17.26651 -16.54175 -15.42509 -14.97237 -14.18032 -13.99693 -13.85007 -12.80073 -12.67431 -12.29292 -12.01585 -11.62946 -11.31769 -11.17405 -11.08935 -10.98563 -10.63559 -10.51804 -10.37258 -10.20111 -9.72565 -8.84469 -7.62928 -7.52638 -6.19490 -4.63410 1.17851 2.19358 3.14443 3.16414 3.21814 3.25475 4.05866 4.12955 4.25579 4.59365 4.96946 5.15080 5.27957 5.42890 5.68609 5.77771 6.31264 6.46082 7.44290 7.90600 8.05592 8.32501 9.02892 9.51014 10.59436 10.77679 Molecular weight = 237.01amu Principal moments of inertia in cm(-1) A = 0.042867 B = 0.005682 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.027088 B = 4926.844219 C = 5131.546752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.556 3.444 10 O -0.581 6.581 11 N -0.765 5.765 12 C 0.150 3.850 13 C -0.118 4.118 14 H 0.131 0.869 15 C -0.139 4.139 16 C -0.001 4.001 17 Cl -0.105 7.105 18 Cl -0.084 7.084 19 H 0.268 0.732 20 H 0.381 0.619 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.122 0.878 24 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.964 -13.407 -0.728 14.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.360 3.640 10 O -0.464 6.464 11 N -0.421 5.421 12 C 0.025 3.975 13 C -0.138 4.138 14 H 0.148 0.852 15 C -0.178 4.178 16 C -0.053 4.053 17 Cl -0.078 7.078 18 Cl -0.057 7.057 19 H 0.079 0.921 20 H 0.213 0.787 21 H 0.087 0.913 22 H 0.082 0.918 23 H 0.140 0.860 24 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.897 -13.347 -0.564 14.228 hybrid contribution 1.053 0.631 0.212 1.246 sum 5.950 -12.716 -0.352 14.043 Atomic orbital electron populations 1.70029 1.07081 1.27263 1.35277 1.25710 0.94603 1.00317 0.92616 0.86358 0.80247 0.81489 0.78651 1.19813 1.20461 1.18883 1.20874 0.94099 0.89491 1.53751 0.91354 1.18210 0.87139 0.82276 0.76388 1.90601 1.14087 1.86430 1.55235 1.46114 1.08561 1.05237 1.82225 1.20670 0.92443 0.82339 1.02060 1.23598 1.03104 0.91665 0.95423 0.85151 1.23975 1.03381 0.98129 0.92269 1.26919 0.84904 1.07917 0.85528 1.98733 1.30304 1.84818 1.93919 1.98754 1.59139 1.96973 1.50839 0.92119 0.78732 0.91302 0.91816 0.86002 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.05 11.85 55.55 0.66 -22.40 14 2 C 0.09 2.44 5.50 -17.36 -0.10 2.34 14 3 Si 0.91 20.12 29.56 -169.99 -5.03 15.09 14 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 14 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 14 6 H -0.26 -5.67 7.11 56.52 0.40 -5.27 14 7 C -0.55 -15.35 9.54 -35.63 -0.34 -15.69 14 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 14 9 C 0.56 15.72 7.74 -12.99 -0.10 15.62 14 10 O -0.58 -18.76 15.04 5.20 0.08 -18.69 14 11 N -0.77 -16.74 5.55 -61.72 -0.34 -17.08 14 12 C 0.15 2.75 5.87 -4.05 -0.02 2.72 14 13 C -0.12 -1.56 5.69 -90.63 -0.52 -2.08 14 14 H 0.13 1.55 8.04 -51.93 -0.42 1.14 14 15 C -0.14 -1.44 9.93 -26.73 -0.27 -1.70 14 16 C 0.00 -0.02 3.62 -26.73 -0.10 -0.11 14 17 Cl -0.10 -1.27 29.29 -51.86 -1.52 -2.79 14 18 Cl -0.08 -1.24 27.27 -51.86 -1.41 -2.65 14 19 H 0.27 7.29 8.29 -40.82 -0.34 6.95 14 20 H 0.38 7.28 8.38 -40.82 -0.34 6.94 14 21 H 0.07 1.37 6.06 -51.93 -0.31 1.06 14 22 H 0.06 1.21 8.14 -51.93 -0.42 0.79 14 23 H 0.12 1.18 8.14 -51.93 -0.42 0.76 14 24 H 0.12 0.96 8.14 -51.93 -0.42 0.53 14 LS Contribution 250.82 15.07 3.78 3.78 Total: -1.00 -33.44 250.82 -7.11 -40.55 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -1.89 Total: 3.08 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -1.44 Total: 1.10 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.32 Total: -39.48 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.08 Total: -18.69 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Atomic # 17 Polarization: -2.50 SS G_CDS: -2.93 Total: -5.44 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -33.44 -7.11 -40.55 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306475837.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.093 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds