Wall clock time and date at job start Sun Mar 29 2020 22:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86800 * 119.99839 * 2 1 4 4 H 1.48507 * 109.47028 * 274.97626 * 3 2 1 5 5 H 1.48499 * 109.47288 * 34.98105 * 3 2 1 6 6 H 1.48502 * 109.46913 * 154.98171 * 3 2 1 7 7 C 1.40049 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99645 * 186.12027 * 7 2 1 9 9 C 1.46379 * 119.99677 * 5.84820 * 7 2 1 10 10 O 1.21683 * 120.00200 * 354.23993 * 9 7 2 11 11 N 1.34774 * 119.99548 * 174.24107 * 9 7 2 12 12 C 1.46499 * 120.00008 * 179.97438 * 11 9 7 13 13 C 1.52990 * 109.47401 * 179.97438 * 12 11 9 14 14 H 1.09004 * 115.54966 * 330.66745 * 13 12 11 15 15 C 1.53001 * 117.50258 * 185.00205 * 13 12 11 16 16 C 1.52996 * 59.99921 * 252.50832 * 15 13 12 17 17 Cl 1.80299 * 117.49816 * 252.50704 * 16 15 13 18 18 Cl 1.80305 * 117.50004 * 107.48913 * 16 15 13 19 19 H 0.96994 * 119.99806 * 0.02562 * 1 2 3 20 20 H 0.96998 * 120.00269 * 359.97438 * 11 9 7 21 21 H 1.09001 * 109.46991 * 300.00163 * 12 11 9 22 22 H 1.09007 * 109.46799 * 59.99535 * 12 11 9 23 23 H 1.09000 * 117.49511 * 0.02562 * 15 13 12 24 24 H 1.08999 * 117.50522 * 144.99658 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3830 2.1072 -1.3949 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4121 0.5921 7 6 2.0070 -1.2129 0.0005 8 1 3.0824 -1.2154 0.1003 9 6 1.2808 -2.4773 -0.1281 10 8 0.0640 -2.4826 -0.1300 11 7 1.9600 -3.6355 -0.2444 12 6 1.2332 -4.9011 -0.3725 13 6 2.2326 -6.0536 -0.4886 14 1 3.1890 -5.8022 -0.9471 15 6 1.6706 -7.4526 -0.7491 16 6 2.2372 -7.1000 0.6276 17 17 3.8244 -7.8229 1.0846 18 17 1.0643 -6.8804 1.9793 19 1 -0.4849 0.8400 -0.0004 20 1 2.9299 -3.6313 -0.2432 21 1 0.6062 -5.0506 0.5064 22 1 0.6074 -4.8720 -1.2646 23 1 0.5887 -7.5518 -0.8382 24 1 2.2571 -8.1215 -1.3789 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306475837.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:14 Heat of formation + Delta-G solvation = -55.118501 kcal Electronic energy + Delta-G solvation = -12430.971205 eV Core-core repulsion = 9816.874251 eV Total energy + Delta-G solvation = -2614.096955 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 237.006 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.81505 -38.70134 -37.04348 -36.64013 -34.82399 -34.10418 -29.26681 -26.94689 -23.31077 -22.04934 -21.75855 -19.17955 -17.71017 -17.44692 -16.33145 -15.93216 -15.65018 -15.35314 -14.32284 -14.19580 -13.62740 -13.44818 -13.07900 -12.89323 -12.77727 -12.59799 -12.38664 -12.18980 -11.99387 -11.84225 -11.49810 -10.92231 -10.76410 -9.86096 -9.45553 -8.28895 -6.83461 0.17238 1.16621 1.41789 1.42683 1.58724 2.16433 2.26492 2.48943 2.93389 3.14272 3.61709 3.66071 3.88644 4.22221 4.61699 4.70550 4.75955 5.04606 5.34171 5.88953 6.23283 6.27481 6.88485 7.55113 8.50125 8.68401 Molecular weight = 237.01amu Principal moments of inertia in cm(-1) A = 0.042867 B = 0.005682 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.027088 B = 4926.844219 C = 5131.546752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.249 1.249 7 C -0.573 4.573 8 H 0.088 0.912 9 C 0.539 3.461 10 O -0.633 6.633 11 N -0.752 5.752 12 C 0.151 3.849 13 C -0.125 4.125 14 H 0.149 0.851 15 C -0.107 4.107 16 C -0.010 4.010 17 Cl -0.095 7.095 18 Cl -0.109 7.109 19 H 0.274 0.726 20 H 0.396 0.604 21 H 0.050 0.950 22 H 0.053 0.947 23 H 0.130 0.870 24 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.967 -13.727 -1.352 15.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.817 3.183 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.172 1.172 7 C -0.610 4.610 8 H 0.106 0.894 9 C 0.343 3.657 10 O -0.520 6.520 11 N -0.407 5.407 12 C 0.026 3.974 13 C -0.144 4.144 14 H 0.167 0.833 15 C -0.145 4.145 16 C -0.061 4.061 17 Cl -0.068 7.068 18 Cl -0.082 7.082 19 H 0.084 0.916 20 H 0.230 0.770 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.148 0.852 24 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.952 -13.723 -1.191 15.430 hybrid contribution 0.450 0.635 0.403 0.877 sum 7.402 -13.088 -0.788 15.057 Atomic orbital electron populations 1.70193 1.09546 1.28926 1.36506 1.26982 0.95508 1.05000 0.91234 0.85003 0.78886 0.75175 0.79192 1.18667 1.19896 1.17202 1.21428 0.95219 0.90253 1.54088 0.89408 1.18571 0.86749 0.84227 0.76116 1.90554 1.16243 1.87625 1.57582 1.45754 1.09297 1.05199 1.80482 1.20670 0.93429 0.82556 1.00733 1.23389 1.02881 0.91134 0.97014 0.83331 1.24191 1.04384 0.95681 0.90195 1.27054 0.85184 1.08381 0.85494 1.98737 1.29627 1.84496 1.93944 1.98755 1.60119 1.97098 1.52200 0.91591 0.76998 0.93146 0.92913 0.85238 0.82727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.53 11.85 21.84 0.26 -50.27 14 2 C 0.03 1.55 5.50 85.30 0.47 2.02 14 3 Si 1.00 40.90 29.56 68.60 2.03 42.93 14 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 14 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 14 6 H -0.25 -9.46 7.11 99.48 0.71 -8.75 14 7 C -0.57 -32.41 9.54 24.83 0.24 -32.17 14 8 H 0.09 4.44 7.85 -2.91 -0.02 4.42 14 9 C 0.54 31.16 7.74 86.36 0.67 31.83 14 10 O -0.63 -42.46 15.04 -4.30 -0.06 -42.53 14 11 N -0.75 -32.99 5.55 -467.42 -2.59 -35.59 14 12 C 0.15 5.51 5.87 86.38 0.51 6.02 14 13 C -0.12 -3.05 5.69 -10.80 -0.06 -3.11 14 14 H 0.15 3.11 8.04 -2.39 -0.02 3.09 14 15 C -0.11 -1.87 9.93 30.59 0.30 -1.57 14 16 C -0.01 -0.23 3.62 30.59 0.11 -0.12 14 17 Cl -0.10 -2.08 29.29 -2.72 -0.08 -2.16 14 18 Cl -0.11 -3.15 27.27 -2.72 -0.07 -3.22 14 19 H 0.27 15.24 8.29 -92.71 -0.77 14.47 14 20 H 0.40 14.80 8.38 -92.71 -0.78 14.02 14 21 H 0.05 2.06 6.06 -2.39 -0.01 2.04 14 22 H 0.05 2.04 8.14 -2.38 -0.02 2.02 14 23 H 0.13 2.15 8.14 -2.39 -0.02 2.14 14 24 H 0.15 1.73 8.14 -2.39 -0.02 1.71 14 Total: -1.00 -74.64 250.82 2.17 -72.48 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.46 Total: 15.46 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 2.23 Total: 2.90 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -2.34 Total: -85.86 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.06 Total: -42.53 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 17 Polarization: -5.23 SS G_CDS: -0.15 Total: -5.38 kcal Total: -74.64 2.17 -72.48 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306475837.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.357 kcal (2) G-P(sol) polarization free energy of solvation -74.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds