Wall clock time and date at job start Sun Mar 29 2020 22:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99796 * 2 1 4 4 H 1.48498 * 109.47274 * 240.00095 * 3 2 1 5 5 H 1.48503 * 109.47240 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47505 * 120.00222 * 3 2 1 7 7 C 1.38812 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99834 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99903 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00161 * 184.87323 * 9 7 2 11 11 C 1.50692 * 115.54840 * 293.87012 * 10 9 7 12 12 C 1.38240 * 119.99101 * 319.49863 * 11 10 9 13 13 C 1.38210 * 120.01609 * 179.97438 * 12 11 10 14 14 C 1.38346 * 119.98874 * 0.02562 * 13 12 11 15 15 Cl 1.73606 * 120.01457 * 180.02562 * 14 13 12 16 16 C 1.38355 * 119.97314 * 0.02562 * 14 13 12 17 17 C 1.38215 * 119.98329 * 359.97438 * 16 14 13 18 18 C 1.52999 * 117.51658 * 79.57103 * 10 9 7 19 19 C 1.52998 * 60.00013 * 107.48294 * 18 10 9 20 20 H 0.97007 * 120.00161 * 359.97438 * 1 2 3 21 21 H 0.97010 * 120.00118 * 4.87250 * 9 7 2 22 22 H 1.08004 * 119.98942 * 359.70231 * 12 11 10 23 23 H 1.08006 * 120.00650 * 179.97438 * 13 12 11 24 24 H 1.07998 * 120.00420 * 179.97438 * 16 14 13 25 25 H 1.08000 * 119.99050 * 180.02562 * 17 16 14 26 26 H 1.08995 * 117.49959 * 214.96886 * 18 10 9 27 27 H 1.09002 * 117.49934 * 359.97438 * 18 10 9 28 28 H 1.09009 * 117.49944 * 252.51277 * 19 18 10 29 29 H 1.09005 * 117.50312 * 107.48843 * 19 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0543 -3.6545 0.1067 11 6 2.9441 -3.9932 -1.0613 12 6 2.5155 -3.7436 -2.3517 13 6 3.3314 -4.0536 -3.4234 14 6 4.5771 -4.6144 -3.2046 15 17 5.6027 -5.0034 -4.5502 16 6 5.0051 -4.8650 -1.9130 17 6 4.1882 -4.5546 -0.8422 18 6 2.5205 -4.0861 1.4985 19 6 1.3562 -4.8127 0.8222 20 1 -0.4851 0.8401 0.0004 21 1 0.3582 -2.3895 -0.0715 22 1 1.5411 -3.3102 -2.5226 23 1 2.9963 -3.8588 -4.4315 24 1 5.9772 -5.3032 -1.7417 25 1 4.5224 -4.7498 0.1661 26 1 3.4708 -4.6152 1.5694 27 1 2.2855 -3.4276 2.3347 28 1 0.3549 -4.6323 1.2135 29 1 1.5405 -5.8198 0.4481 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306504337.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:14 Heat of formation + Delta-G solvation = 54.447319 kcal Electronic energy + Delta-G solvation = -14185.082881 eV Core-core repulsion = 11714.003001 eV Total energy + Delta-G solvation = -2471.079880 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.34939 -37.01581 -35.92087 -33.11363 -30.78845 -29.93118 -29.58185 -24.15326 -22.72413 -22.56082 -21.53220 -19.19629 -17.18180 -16.91079 -15.56714 -14.92607 -14.48933 -14.31640 -13.80702 -13.20787 -13.16472 -13.11801 -12.52493 -11.48426 -11.37734 -11.29725 -10.98544 -10.93197 -10.83827 -10.50434 -10.29039 -10.26201 -9.72452 -9.57271 -8.96657 -8.68535 -8.05940 -7.08784 -5.84244 -3.15500 1.49465 1.65990 2.34173 3.41421 3.46012 3.47034 3.93183 4.44041 4.66984 5.04553 5.10976 5.17951 5.30161 5.51383 5.61282 5.75045 5.80019 5.96632 6.06814 6.13404 6.29559 6.37080 6.41570 6.56804 6.72496 6.84404 7.08484 7.20770 7.69935 8.33749 9.45077 9.97507 10.33755 11.37498 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.023550 B = 0.007487 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.668582 B = 3738.816350 C = 4449.064252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.008 4.008 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.685 5.685 10 C 0.171 3.829 11 C -0.029 4.029 12 C -0.074 4.074 13 C -0.115 4.115 14 C -0.046 4.046 15 Cl -0.091 7.091 16 C -0.117 4.117 17 C -0.112 4.112 18 C -0.194 4.194 19 C -0.175 4.175 20 H 0.257 0.743 21 H 0.389 0.611 22 H 0.135 0.865 23 H 0.127 0.873 24 H 0.125 0.875 25 H 0.129 0.871 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.037 -10.928 -3.690 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.324 5.324 10 C 0.077 3.923 11 C -0.032 4.032 12 C -0.092 4.092 13 C -0.134 4.134 14 C -0.073 4.073 15 Cl -0.062 7.062 16 C -0.136 4.136 17 C -0.130 4.130 18 C -0.234 4.234 19 C -0.213 4.213 20 H 0.067 0.933 21 H 0.224 0.776 22 H 0.153 0.847 23 H 0.145 0.855 24 H 0.143 0.857 25 H 0.147 0.853 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.190 -10.760 -3.800 13.488 hybrid contribution 0.305 1.016 -0.138 1.070 sum 7.496 -9.744 -3.939 12.909 Atomic orbital electron populations 1.69649 1.05101 1.25995 1.57210 1.24744 0.95492 0.97684 1.02514 0.86270 0.78584 0.83370 0.78013 1.21128 1.21640 1.21142 1.19107 0.91059 0.83393 1.43143 0.91154 1.41756 1.05623 0.98284 1.86764 1.18560 0.96497 0.88439 0.88848 1.19939 0.93903 0.94471 0.94839 1.20987 1.00200 0.96964 0.91065 1.21017 0.92705 0.99690 0.99963 1.20823 0.93174 1.05113 0.88143 1.98329 1.68219 1.93103 1.46545 1.20894 1.00238 1.01796 0.90630 1.21056 0.93762 0.99616 0.98591 1.23441 0.97173 1.03773 0.98972 1.23122 0.97876 0.95715 1.04553 0.93326 0.77555 0.84696 0.85504 0.85656 0.85284 0.89758 0.88528 0.88737 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.31 13.06 55.49 0.72 -26.58 15 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 15 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 15 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 15 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 7 C -0.24 -6.36 9.82 -15.06 -0.15 -6.51 15 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 15 9 N -0.69 -16.52 5.14 -48.31 -0.25 -16.77 15 10 C 0.17 3.33 2.48 -132.98 -0.33 3.00 15 11 C -0.03 -0.52 5.30 -104.62 -0.56 -1.07 15 12 C -0.07 -1.32 9.50 -39.59 -0.38 -1.70 15 13 C -0.12 -1.82 9.83 -39.55 -0.39 -2.21 15 14 C -0.05 -0.69 6.32 -39.50 -0.25 -0.94 15 15 Cl -0.09 -1.20 28.96 -51.86 -1.50 -2.71 15 16 C -0.12 -1.70 9.83 -39.55 -0.39 -2.09 15 17 C -0.11 -1.75 9.38 -39.59 -0.37 -2.12 15 18 C -0.19 -3.35 9.78 -26.73 -0.26 -3.61 15 19 C -0.18 -2.87 10.16 -26.73 -0.27 -3.14 15 20 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 21 H 0.39 9.95 8.04 -40.82 -0.33 9.62 15 22 H 0.14 2.55 7.97 -52.48 -0.42 2.13 15 23 H 0.13 1.77 8.06 -52.48 -0.42 1.35 15 24 H 0.13 1.52 8.06 -52.49 -0.42 1.10 15 25 H 0.13 1.79 5.97 -52.49 -0.31 1.48 15 26 H 0.08 1.24 6.13 -51.93 -0.32 0.93 15 27 H 0.10 1.81 8.14 -51.93 -0.42 1.39 15 28 H 0.09 1.56 8.14 -51.92 -0.42 1.13 15 29 H 0.09 1.25 8.14 -51.93 -0.42 0.83 15 LS Contribution 270.74 15.07 4.08 4.08 Total: -1.00 -28.39 270.74 -8.44 -36.84 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -3.04 Total: 8.70 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -3.44 Total: -20.72 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.48 Total: -43.36 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.50 Total: -2.71 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.39 -8.44 -36.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306504337.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.283 kcal (2) G-P(sol) polarization free energy of solvation -28.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds