Wall clock time and date at job start Sun Mar 29 2020 22:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99796 * 2 1 4 4 H 1.48498 * 109.47274 * 240.00095 * 3 2 1 5 5 H 1.48503 * 109.47240 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47505 * 120.00222 * 3 2 1 7 7 C 1.38812 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99834 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99903 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00161 * 184.87323 * 9 7 2 11 11 C 1.50692 * 115.54840 * 293.87012 * 10 9 7 12 12 C 1.38240 * 119.99101 * 319.49863 * 11 10 9 13 13 C 1.38210 * 120.01609 * 179.97438 * 12 11 10 14 14 C 1.38346 * 119.98874 * 0.02562 * 13 12 11 15 15 Cl 1.73606 * 120.01457 * 180.02562 * 14 13 12 16 16 C 1.38355 * 119.97314 * 0.02562 * 14 13 12 17 17 C 1.38215 * 119.98329 * 359.97438 * 16 14 13 18 18 C 1.52999 * 117.51658 * 79.57103 * 10 9 7 19 19 C 1.52998 * 60.00013 * 107.48294 * 18 10 9 20 20 H 0.97007 * 120.00161 * 359.97438 * 1 2 3 21 21 H 0.97010 * 120.00118 * 4.87250 * 9 7 2 22 22 H 1.08004 * 119.98942 * 359.70231 * 12 11 10 23 23 H 1.08006 * 120.00650 * 179.97438 * 13 12 11 24 24 H 1.07998 * 120.00420 * 179.97438 * 16 14 13 25 25 H 1.08000 * 119.99050 * 180.02562 * 17 16 14 26 26 H 1.08995 * 117.49959 * 214.96886 * 18 10 9 27 27 H 1.09002 * 117.49934 * 359.97438 * 18 10 9 28 28 H 1.09009 * 117.49944 * 252.51277 * 19 18 10 29 29 H 1.09005 * 117.50312 * 107.48843 * 19 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0543 -3.6545 0.1067 11 6 2.9441 -3.9932 -1.0613 12 6 2.5155 -3.7436 -2.3517 13 6 3.3314 -4.0536 -3.4234 14 6 4.5771 -4.6144 -3.2046 15 17 5.6027 -5.0034 -4.5502 16 6 5.0051 -4.8650 -1.9130 17 6 4.1882 -4.5546 -0.8422 18 6 2.5205 -4.0861 1.4985 19 6 1.3562 -4.8127 0.8222 20 1 -0.4851 0.8401 0.0004 21 1 0.3582 -2.3895 -0.0715 22 1 1.5411 -3.3102 -2.5226 23 1 2.9963 -3.8588 -4.4315 24 1 5.9772 -5.3032 -1.7417 25 1 4.5224 -4.7498 0.1661 26 1 3.4708 -4.6152 1.5694 27 1 2.2855 -3.4276 2.3347 28 1 0.3549 -4.6323 1.2135 29 1 1.5405 -5.8198 0.4481 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306504337.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:14 Heat of formation + Delta-G solvation = 39.303947 kcal Electronic energy + Delta-G solvation = -14185.739547 eV Core-core repulsion = 11714.003001 eV Total energy + Delta-G solvation = -2471.736546 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.65646 -38.35899 -37.12691 -35.04650 -32.14998 -31.45157 -31.13828 -26.08976 -24.08464 -23.89311 -22.85700 -20.64128 -19.13971 -18.25422 -17.09545 -16.19941 -16.14267 -15.64142 -15.44438 -15.05120 -14.40589 -14.35368 -13.94948 -13.11578 -12.88122 -12.66815 -12.59303 -12.44552 -12.27223 -12.15014 -11.96092 -11.69399 -11.56998 -11.04831 -10.78091 -9.91548 -9.41186 -8.97949 -7.95249 -5.25053 0.24134 0.42512 1.18634 1.46194 1.47826 1.53882 2.52963 2.65482 3.18373 3.40245 3.62208 3.82175 3.98583 4.02398 4.27226 4.39383 4.49290 4.67521 4.72532 4.82944 4.95562 5.04592 5.12542 5.32102 5.39036 5.44383 5.56319 5.79401 5.93327 6.27169 7.32653 8.05570 8.29888 9.27191 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.023550 B = 0.007487 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.668582 B = 3738.816350 C = 4449.064252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.069 4.069 3 Si 0.965 3.035 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.224 4.224 8 H 0.068 0.932 9 N -0.698 5.698 10 C 0.138 3.862 11 C -0.046 4.046 12 C -0.096 4.096 13 C -0.117 4.117 14 C -0.050 4.050 15 Cl -0.072 7.072 16 C -0.109 4.109 17 C -0.110 4.110 18 C -0.184 4.184 19 C -0.155 4.155 20 H 0.251 0.749 21 H 0.376 0.624 22 H 0.111 0.889 23 H 0.139 0.861 24 H 0.156 0.844 25 H 0.151 0.849 26 H 0.116 0.884 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.266 -12.314 -3.751 15.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.261 4.261 3 Si 0.794 3.206 4 H -0.208 1.208 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.356 4.356 8 H 0.086 0.914 9 N -0.336 5.336 10 C 0.046 3.954 11 C -0.049 4.049 12 C -0.115 4.115 13 C -0.135 4.135 14 C -0.076 4.076 15 Cl -0.043 7.043 16 C -0.127 4.127 17 C -0.129 4.129 18 C -0.223 4.223 19 C -0.193 4.193 20 H 0.060 0.940 21 H 0.209 0.791 22 H 0.129 0.871 23 H 0.157 0.843 24 H 0.173 0.827 25 H 0.168 0.832 26 H 0.134 0.866 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.464 -12.189 -3.859 15.907 hybrid contribution -0.321 1.319 -0.174 1.369 sum 9.143 -10.871 -4.033 14.766 Atomic orbital electron populations 1.69790 1.06384 1.26051 1.59555 1.25435 0.96237 1.00613 1.03812 0.85344 0.77336 0.79825 0.78096 1.20808 1.22139 1.20428 1.19317 0.90963 0.84601 1.40685 0.91440 1.41815 1.05171 0.99514 1.87088 1.18901 0.98287 0.87755 0.90442 1.19858 0.94891 0.96092 0.94010 1.20891 0.99952 0.98494 0.92114 1.21118 0.92990 0.99455 0.99985 1.20955 0.93025 1.04430 0.89200 1.98339 1.67432 1.92871 1.45675 1.21222 1.01064 1.00527 0.89890 1.21241 0.92635 0.98934 1.00061 1.23442 0.99022 1.03337 0.96501 1.23197 0.97381 0.96040 1.02659 0.94029 0.79092 0.87058 0.84301 0.82657 0.83196 0.86564 0.90459 0.89319 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.30 13.06 21.65 0.28 -58.01 15 2 C -0.07 -3.89 5.50 84.86 0.47 -3.42 15 3 Si 0.96 46.14 29.55 68.60 2.03 48.17 15 4 H -0.28 -13.17 7.11 99.48 0.71 -12.46 15 5 H -0.30 -14.21 7.11 99.48 0.71 -13.51 15 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 7 C -0.22 -12.21 9.82 84.03 0.83 -11.39 15 8 H 0.07 3.65 7.83 -2.91 -0.02 3.63 15 9 N -0.70 -34.33 5.14 -306.76 -1.58 -35.91 15 10 C 0.14 5.30 2.48 2.85 0.01 5.31 15 11 C -0.05 -1.61 5.30 -19.87 -0.11 -1.72 15 12 C -0.10 -3.43 9.50 22.26 0.21 -3.22 15 13 C -0.12 -3.57 9.83 22.29 0.22 -3.35 15 14 C -0.05 -1.36 6.32 22.32 0.14 -1.22 15 15 Cl -0.07 -1.71 28.96 -2.72 -0.08 -1.79 15 16 C -0.11 -2.77 9.83 22.29 0.22 -2.55 15 17 C -0.11 -3.13 9.38 22.26 0.21 -2.92 15 18 C -0.18 -6.00 9.78 30.59 0.30 -5.70 15 19 C -0.16 -4.84 10.16 30.59 0.31 -4.53 15 20 H 0.25 14.78 8.31 -92.70 -0.77 14.01 15 21 H 0.38 19.97 8.04 -92.70 -0.75 19.22 15 22 H 0.11 4.41 7.97 -2.91 -0.02 4.39 15 23 H 0.14 3.76 8.06 -2.91 -0.02 3.73 15 24 H 0.16 3.02 8.06 -2.91 -0.02 3.00 15 25 H 0.15 3.54 5.97 -2.91 -0.02 3.52 15 26 H 0.12 3.01 6.13 -2.39 -0.01 2.99 15 27 H 0.08 2.83 8.14 -2.39 -0.02 2.81 15 28 H 0.09 2.86 8.14 -2.38 -0.02 2.84 15 29 H 0.12 2.97 8.14 -2.38 -0.02 2.95 15 Total: -1.00 -61.15 270.74 3.88 -57.27 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.42 Total: 25.00 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 2.80 Total: -34.72 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -1.30 Total: -93.92 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.79 kcal Total: -61.15 3.88 -57.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306504337.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.572 kcal (2) G-P(sol) polarization free energy of solvation -61.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds