Wall clock time and date at job start Sun Mar 29 2020 22:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46762 * 240.00249 * 3 2 1 5 5 H 1.48506 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99904 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00072 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00066 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99838 * 180.02562 * 11 10 9 14 14 H 1.09007 * 115.54768 * 325.58010 * 13 11 10 15 15 C 1.52999 * 117.50235 * 111.25265 * 13 11 10 16 16 C 1.52999 * 117.50114 * 179.91692 * 13 11 10 17 17 Cl 1.80301 * 117.49669 * 359.97438 * 16 13 11 18 18 Cl 1.80291 * 117.50265 * 144.99667 * 16 13 11 19 19 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 21 21 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 22 22 H 0.97001 * 119.99251 * 0.02562 * 10 9 7 23 23 H 1.09001 * 117.50236 * 214.97763 * 15 13 11 24 24 H 1.09003 * 117.49771 * 359.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5613 -5.1050 0.0011 13 6 2.7330 -6.0288 0.0016 14 1 3.6552 -5.8591 -0.5543 15 6 2.8181 -6.8849 1.2668 16 6 2.1606 -7.4477 0.0042 17 17 0.3660 -7.6213 0.0070 18 17 3.0630 -8.7111 -0.9123 19 1 -0.4849 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 3.1567 -3.4354 0.0009 23 1 3.7962 -7.2789 1.5431 24 1 2.1661 -6.6194 2.0990 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306507434.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:16 Heat of formation + Delta-G solvation = -22.407731 kcal Electronic energy + Delta-G solvation = -12417.209954 eV Core-core repulsion = 9804.531445 eV Total energy + Delta-G solvation = -2612.678509 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 237.006 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.42826 -37.03483 -35.90016 -35.01183 -34.18723 -32.34569 -27.64707 -24.43493 -22.46969 -21.83490 -19.67136 -17.78641 -16.37697 -15.63817 -15.06372 -14.66131 -14.28489 -13.78171 -12.98457 -12.77911 -12.51792 -12.13647 -11.99316 -11.66572 -11.11419 -11.01283 -10.91293 -10.80304 -10.44450 -10.27928 -9.92220 -9.44905 -8.89530 -8.76899 -7.95091 -6.19636 -4.27117 1.17823 2.23486 2.72642 3.23518 3.28495 3.29817 3.49726 3.83284 4.19696 4.33106 4.45437 5.11012 5.16614 5.23608 5.43702 5.66331 7.24262 7.34299 7.46782 7.60989 7.92758 8.53377 8.71943 8.99722 9.39440 10.90400 Molecular weight = 237.01amu Principal moments of inertia in cm(-1) A = 0.054640 B = 0.005294 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.326571 B = 5288.060183 C = 5618.180074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.704 5.704 11 C 0.519 3.481 12 O -0.527 6.527 13 C -0.155 4.155 14 H 0.141 0.859 15 C -0.121 4.121 16 C 0.021 3.979 17 Cl -0.054 7.054 18 Cl -0.103 7.103 19 H 0.267 0.733 20 H 0.028 0.972 21 H 0.028 0.972 22 H 0.391 0.609 23 H 0.125 0.875 24 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.806 -13.719 1.258 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.352 5.352 11 C 0.302 3.698 12 O -0.404 6.404 13 C -0.178 4.178 14 H 0.158 0.842 15 C -0.159 4.159 16 C -0.032 4.032 17 Cl -0.026 7.026 18 Cl -0.076 7.076 19 H 0.077 0.923 20 H 0.046 0.954 21 H 0.046 0.954 22 H 0.224 0.776 23 H 0.143 0.857 24 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.665 -13.822 1.177 15.390 hybrid contribution 0.928 0.895 -0.195 1.304 sum 7.593 -12.927 0.982 15.024 Atomic orbital electron populations 1.69963 1.06115 1.27491 1.48634 1.24950 0.94921 0.99469 0.94632 0.86461 0.79410 0.82262 0.78698 1.20054 1.21046 1.20049 1.21174 0.93250 0.90407 1.53563 0.91902 1.19140 0.88187 0.81671 0.97894 1.46409 1.11313 1.05621 1.71832 1.19203 0.88322 0.83530 0.78783 1.90800 1.15698 1.84139 1.49776 1.23224 1.01778 0.90218 1.02571 0.84176 1.23879 1.03103 0.97523 0.91368 1.26354 0.84106 0.90674 1.02028 1.98788 1.08036 1.97416 1.98394 1.98734 1.74870 1.56846 1.77115 0.92339 0.95360 0.95373 0.77601 0.85660 0.85696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.73 13.29 55.43 0.74 -24.99 14 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 14 3 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 14 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 14 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 14 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 14 7 C -0.55 -14.46 9.28 -34.44 -0.32 -14.78 14 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 14 9 C 0.25 6.47 5.43 -5.19 -0.03 6.44 14 10 N -0.70 -14.10 5.55 -61.47 -0.34 -14.44 14 11 C 0.52 9.77 7.61 -10.99 -0.08 9.69 14 12 O -0.53 -11.87 13.70 5.55 0.08 -11.79 14 13 C -0.16 -2.09 6.03 -91.77 -0.55 -2.64 14 14 H 0.14 1.51 8.14 -51.93 -0.42 1.09 14 15 C -0.12 -1.31 9.92 -26.69 -0.26 -1.58 14 16 C 0.02 0.27 3.62 -26.69 -0.10 0.18 14 17 Cl -0.05 -0.86 26.13 -51.86 -1.35 -2.22 14 18 Cl -0.10 -1.21 29.29 -51.86 -1.52 -2.73 14 19 H 0.27 7.30 8.31 -40.82 -0.34 6.96 14 20 H 0.03 0.81 8.14 -51.93 -0.42 0.39 14 21 H 0.03 0.80 8.14 -51.93 -0.42 0.38 14 22 H 0.39 6.63 8.32 -40.82 -0.34 6.29 14 23 H 0.13 0.97 8.14 -51.93 -0.42 0.55 14 24 H 0.12 1.41 8.14 -51.93 -0.42 0.99 14 LS Contribution 251.08 15.07 3.78 3.78 Total: -1.00 -30.52 251.08 -7.07 -37.59 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -1.99 Total: 0.35 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -1.44 Total: -1.04 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.40 Total: -39.43 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -2.87 Total: -4.94 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.52 -7.07 -37.59 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306507434.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.179 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds