Wall clock time and date at job start Sun Mar 29 2020 22:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46762 * 240.00249 * 3 2 1 5 5 H 1.48506 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99904 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00072 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00066 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99838 * 180.02562 * 11 10 9 14 14 H 1.09007 * 115.54768 * 325.58010 * 13 11 10 15 15 C 1.52999 * 117.50235 * 111.25265 * 13 11 10 16 16 C 1.52999 * 117.50114 * 179.91692 * 13 11 10 17 17 Cl 1.80301 * 117.49669 * 359.97438 * 16 13 11 18 18 Cl 1.80291 * 117.50265 * 144.99667 * 16 13 11 19 19 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 21 21 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 22 22 H 0.97001 * 119.99251 * 0.02562 * 10 9 7 23 23 H 1.09001 * 117.50236 * 214.97763 * 15 13 11 24 24 H 1.09003 * 117.49771 * 359.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5613 -5.1050 0.0011 13 6 2.7330 -6.0288 0.0016 14 1 3.6552 -5.8591 -0.5543 15 6 2.8181 -6.8849 1.2668 16 6 2.1606 -7.4477 0.0042 17 17 0.3660 -7.6213 0.0070 18 17 3.0630 -8.7111 -0.9123 19 1 -0.4849 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 3.1567 -3.4354 0.0009 23 1 3.7962 -7.2789 1.5431 24 1 2.1661 -6.6194 2.0990 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306507434.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:15 Heat of formation + Delta-G solvation = -43.340353 kcal Electronic energy + Delta-G solvation = -12418.117660 eV Core-core repulsion = 9804.531445 eV Total energy + Delta-G solvation = -2613.586216 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 237.006 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.86696 -38.22979 -36.96984 -36.26015 -35.90622 -34.30952 -29.59444 -26.02713 -23.85465 -23.18662 -21.21403 -19.24066 -18.06014 -17.19208 -16.55965 -16.31899 -15.91348 -15.26104 -14.34414 -14.05508 -13.98893 -13.92059 -13.41321 -12.96282 -12.88754 -12.66276 -12.23610 -12.11455 -11.88194 -11.55711 -11.48466 -11.02743 -10.77613 -10.38386 -9.80630 -8.27675 -6.44163 0.15094 1.15818 1.44805 1.45610 1.48839 1.56813 2.23680 2.37778 2.57292 3.05891 3.07508 3.38031 3.93221 4.18993 4.55778 4.73165 5.13654 5.26615 5.49025 5.69627 5.86108 6.66589 6.89174 7.24824 7.47739 8.84064 Molecular weight = 237.01amu Principal moments of inertia in cm(-1) A = 0.054640 B = 0.005294 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.326571 B = 5288.060183 C = 5618.180074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.269 3.731 10 N -0.700 5.700 11 C 0.515 3.485 12 O -0.569 6.569 13 C -0.157 4.157 14 H 0.175 0.825 15 C -0.090 4.090 16 C 0.009 3.991 17 Cl -0.089 7.089 18 Cl -0.083 7.083 19 H 0.268 0.732 20 H -0.013 1.013 21 H -0.010 1.010 22 H 0.409 0.591 23 H 0.170 0.830 24 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.792 -13.930 1.575 17.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.147 3.853 10 N -0.350 5.350 11 C 0.300 3.700 12 O -0.448 6.448 13 C -0.179 4.179 14 H 0.193 0.807 15 C -0.128 4.128 16 C -0.043 4.043 17 Cl -0.062 7.062 18 Cl -0.056 7.056 19 H 0.077 0.923 20 H 0.005 0.995 21 H 0.008 0.992 22 H 0.245 0.755 23 H 0.188 0.812 24 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.703 -14.070 1.494 17.156 hybrid contribution 0.001 0.862 -0.312 0.917 sum 9.704 -13.207 1.182 16.431 Atomic orbital electron populations 1.70132 1.08270 1.28584 1.49983 1.26053 0.95742 1.03887 0.93914 0.85221 0.77900 0.76686 0.79497 1.18740 1.21290 1.18562 1.21601 0.94372 0.90570 1.52868 0.89692 1.18530 0.88570 0.84040 0.94192 1.46107 1.11336 1.05078 1.72456 1.20068 0.88822 0.84178 0.76886 1.90789 1.18136 1.84828 1.51058 1.23129 1.01281 0.87796 1.05644 0.80735 1.24127 1.04604 0.94296 0.89738 1.26523 0.82587 0.90977 1.04229 1.98786 1.11356 1.97527 1.98524 1.98739 1.73958 1.55962 1.76981 0.92310 0.99499 0.99198 0.75472 0.81224 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.61 13.29 21.45 0.28 -55.32 14 2 C 0.00 0.20 5.46 84.65 0.46 0.66 14 3 Si 0.98 41.54 29.54 68.60 2.03 43.57 14 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 14 5 H -0.29 -12.14 7.11 99.48 0.71 -11.43 14 6 H -0.26 -10.38 7.11 99.48 0.71 -9.68 14 7 C -0.56 -29.48 9.28 25.60 0.24 -29.24 14 8 H 0.09 4.02 7.60 -2.91 -0.02 4.00 14 9 C 0.27 14.35 5.43 85.63 0.46 14.81 14 10 N -0.70 -27.92 5.55 -466.77 -2.59 -30.51 14 11 C 0.51 19.23 7.61 87.66 0.67 19.90 14 12 O -0.57 -26.36 13.70 -3.04 -0.04 -26.40 14 13 C -0.16 -3.80 6.03 -11.54 -0.07 -3.87 14 14 H 0.18 3.03 8.14 -2.38 -0.02 3.01 14 15 C -0.09 -1.65 9.92 30.62 0.30 -1.34 14 16 C 0.01 0.22 3.62 30.62 0.11 0.33 14 17 Cl -0.09 -2.86 26.13 -2.72 -0.07 -2.93 14 18 Cl -0.08 -1.74 29.29 -2.72 -0.08 -1.81 14 19 H 0.27 15.03 8.31 -92.71 -0.77 14.26 14 20 H -0.01 -0.79 8.14 -2.39 -0.02 -0.80 14 21 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 14 22 H 0.41 13.16 8.32 -92.71 -0.77 12.39 14 23 H 0.17 1.67 8.14 -2.39 -0.02 1.65 14 24 H 0.12 2.42 8.14 -2.39 -0.02 2.40 14 Total: -1.00 -68.96 251.08 2.17 -66.80 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 0.46 Total: 5.37 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 2.18 Total: 1.25 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -2.30 Total: -85.83 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.04 Total: -26.40 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 17 Polarization: -4.60 SS G_CDS: -0.15 Total: -4.75 kcal Total: -68.96 2.17 -66.80 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306507434.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.457 kcal (2) G-P(sol) polarization free energy of solvation -68.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds