Wall clock time and date at job start Sun Mar 29 2020 22:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99819 * 2 1 4 4 H 1.48499 * 109.47103 * 270.00159 * 3 2 1 5 5 H 1.48498 * 109.47331 * 30.00411 * 3 2 1 6 6 H 1.48496 * 109.47093 * 150.00338 * 3 2 1 7 7 C 1.37877 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99899 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.46944 * 179.97438 * 9 7 2 11 11 C 1.34783 * 120.00138 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99508 * 0.02562 * 11 10 9 13 13 C 1.50702 * 120.00171 * 179.97438 * 11 10 9 14 14 H 1.09002 * 115.56044 * 34.30916 * 13 11 10 15 15 C 1.52997 * 117.49669 * 248.62535 * 13 11 10 16 16 C 1.53000 * 117.49604 * 180.02562 * 13 11 10 17 17 Cl 1.80293 * 117.50038 * 0.02562 * 16 13 11 18 18 Cl 1.80296 * 117.49611 * 214.97704 * 16 13 11 19 19 H 0.97002 * 120.00292 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47171 * 60.00313 * 9 7 2 21 21 H 1.09000 * 109.47042 * 299.99886 * 9 7 2 22 22 H 0.96998 * 120.00377 * 359.97438 * 10 9 7 23 23 H 1.08999 * 117.49685 * 145.02383 * 15 13 11 24 24 H 1.08999 * 117.52022 * 359.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7539 -4.8834 -0.0015 12 8 0.5615 -5.1049 -0.0006 13 6 2.7332 -6.0288 -0.0033 14 1 3.6570 -5.8586 0.5496 15 6 2.8143 -6.8867 -1.2675 16 6 2.1607 -7.4476 -0.0035 17 17 0.3661 -7.6213 -0.0022 18 17 3.0656 -8.7105 0.9115 19 1 -0.4851 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 3.1567 -3.4354 -0.0028 23 1 3.7915 -7.2811 -1.5462 24 1 2.1593 -6.6233 -2.0979 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306507435.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:17 Heat of formation + Delta-G solvation = -22.479920 kcal Electronic energy + Delta-G solvation = -12417.506323 eV Core-core repulsion = 9804.824683 eV Total energy + Delta-G solvation = -2612.681640 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 237.006 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.43195 -37.03862 -35.90119 -35.01521 -34.18865 -32.34683 -27.64892 -24.43829 -22.46675 -21.83653 -19.67236 -17.78885 -16.38000 -15.64064 -15.06391 -14.66195 -14.28529 -13.78021 -12.98541 -12.77976 -12.51776 -12.13824 -12.00227 -11.66687 -11.10614 -11.00821 -10.93234 -10.79521 -10.44540 -10.28108 -9.92441 -9.43523 -8.89649 -8.77410 -7.95135 -6.19922 -4.27265 1.17807 2.23374 2.72587 3.22328 3.28618 3.30869 3.49902 3.83326 4.19722 4.33024 4.45352 5.11014 5.16476 5.23569 5.43665 5.66318 7.24257 7.34405 7.46706 7.61090 7.92527 8.53345 8.71980 8.99735 9.39347 10.90160 Molecular weight = 237.01amu Principal moments of inertia in cm(-1) A = 0.054638 B = 0.005294 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.339931 B = 5288.007044 C = 5618.231505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.704 5.704 11 C 0.519 3.481 12 O -0.527 6.527 13 C -0.155 4.155 14 H 0.141 0.859 15 C -0.121 4.121 16 C 0.021 3.979 17 Cl -0.054 7.054 18 Cl -0.103 7.103 19 H 0.266 0.734 20 H 0.028 0.972 21 H 0.029 0.971 22 H 0.391 0.609 23 H 0.125 0.875 24 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.812 -13.733 -1.258 15.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.352 5.352 11 C 0.302 3.698 12 O -0.404 6.404 13 C -0.178 4.178 14 H 0.158 0.842 15 C -0.159 4.159 16 C -0.031 4.031 17 Cl -0.026 7.026 18 Cl -0.076 7.076 19 H 0.076 0.924 20 H 0.046 0.954 21 H 0.047 0.953 22 H 0.224 0.776 23 H 0.143 0.857 24 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.675 -13.837 -1.172 15.408 hybrid contribution 0.916 0.898 0.184 1.296 sum 7.591 -12.939 -0.988 15.034 Atomic orbital electron populations 1.69972 1.06117 1.27378 1.48732 1.24953 0.94920 0.99484 0.94643 0.86402 0.79615 0.82591 0.78230 1.20447 1.20982 1.19737 1.21211 0.93286 0.90394 1.53429 0.91851 1.19142 0.88195 0.81691 0.97898 1.46408 1.11312 1.05618 1.71838 1.19206 0.88320 0.83531 0.78781 1.90799 1.15700 1.84140 1.49772 1.23224 1.01782 0.90204 1.02582 0.84168 1.23861 1.03145 0.97527 0.91355 1.26333 0.84103 0.90688 1.02026 1.98787 1.08025 1.97415 1.98402 1.98734 1.74742 1.56891 1.77207 0.92397 0.95381 0.95342 0.77600 0.85657 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.73 13.29 55.43 0.74 -24.99 14 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 14 3 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 14 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 14 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 14 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 14 7 C -0.54 -14.44 9.28 -34.44 -0.32 -14.76 14 8 H 0.06 1.56 7.60 -52.49 -0.40 1.17 14 9 C 0.25 6.46 5.43 -5.20 -0.03 6.43 14 10 N -0.70 -14.10 5.55 -61.47 -0.34 -14.44 14 11 C 0.52 9.77 7.61 -10.98 -0.08 9.69 14 12 O -0.53 -11.87 13.70 5.56 0.08 -11.79 14 13 C -0.16 -2.09 6.03 -91.77 -0.55 -2.64 14 14 H 0.14 1.51 8.14 -51.93 -0.42 1.09 14 15 C -0.12 -1.31 9.91 -26.75 -0.27 -1.58 14 16 C 0.02 0.28 3.61 -26.75 -0.10 0.18 14 17 Cl -0.05 -0.86 26.13 -51.86 -1.35 -2.22 14 18 Cl -0.10 -1.21 29.29 -51.86 -1.52 -2.73 14 19 H 0.27 7.27 8.31 -40.82 -0.34 6.93 14 20 H 0.03 0.80 8.14 -51.93 -0.42 0.38 14 21 H 0.03 0.82 8.14 -51.93 -0.42 0.39 14 22 H 0.39 6.63 8.32 -40.82 -0.34 6.29 14 23 H 0.13 0.97 8.14 -51.93 -0.42 0.55 14 24 H 0.12 1.41 8.14 -51.93 -0.42 0.99 14 LS Contribution 251.07 15.07 3.78 3.78 Total: -1.00 -30.54 251.07 -7.07 -37.61 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -1.99 Total: 0.32 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -1.44 Total: -1.04 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.40 Total: -39.43 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -2.87 Total: -4.94 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.54 -7.07 -37.61 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306507435.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.128 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds