Wall clock time and date at job start Sun Mar 29 2020 22:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 N 1.32972 * 119.70319 * 46.50359 * 3 2 1 5 5 C 1.32084 * 121.52419 * 179.97438 * 4 3 2 6 6 N 1.39038 * 119.61248 * 179.97438 * 5 4 3 7 7 C 1.46496 * 119.99397 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.47119 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99314 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00533 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99757 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00266 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46843 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.46770 * 120.00004 * 12 10 8 15 15 H 1.48504 * 109.47165 * 240.00225 * 12 10 8 16 16 C 1.39426 * 120.76906 * 359.97438 * 5 4 3 17 17 C 1.38287 * 119.33945 * 0.02562 * 16 5 4 18 18 C 1.38874 * 118.58792 * 0.02562 * 17 16 5 19 19 Cl 1.73598 * 120.40432 * 179.97438 * 18 17 16 20 20 H 0.97000 * 120.00239 * 0.02562 * 6 5 4 21 21 H 1.08997 * 109.47460 * 299.99703 * 7 6 5 22 22 H 1.09000 * 109.47379 * 60.00801 * 7 6 5 23 23 H 0.96994 * 119.99995 * 179.97438 * 11 10 8 24 24 H 1.08003 * 120.32677 * 180.02562 * 16 5 4 25 25 H 1.07999 * 120.70305 * 180.02562 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 7 3.2273 -0.7941 -0.8379 5 6 4.5475 -0.8220 -0.8687 6 7 5.1962 -1.6687 -1.7605 7 6 6.6600 -1.7068 -1.8014 8 6 7.1079 -2.6972 -2.8453 9 1 6.3752 -3.2432 -3.4210 10 6 8.4528 -2.9055 -3.0662 11 7 9.3449 -2.2402 -2.3654 12 14 9.0078 -4.1336 -4.3597 13 1 7.8179 -4.7459 -5.0037 14 1 9.8222 -3.4362 -5.3870 15 1 9.8243 -5.1945 -3.7169 16 6 5.2981 -0.0123 -0.0172 17 6 4.6470 0.8273 0.8679 18 6 3.2583 0.8341 0.8781 19 17 2.3929 1.8692 1.9705 20 1 4.6794 -2.2342 -2.3557 21 1 7.0425 -0.7174 -2.0521 22 1 7.0430 -2.0082 -0.8264 23 1 10.2911 -2.3869 -2.5205 24 1 6.3773 -0.0406 -0.0487 25 1 5.2066 1.4641 1.5370 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306531277.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:08 Heat of formation + Delta-G solvation = 57.722133 kcal Electronic energy + Delta-G solvation = -13285.906244 eV Core-core repulsion = 10711.428027 eV Total energy + Delta-G solvation = -2574.478217 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.036 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.23730 -36.90309 -36.42505 -35.29566 -32.85990 -32.43620 -29.97016 -26.90228 -24.88539 -23.11110 -22.05969 -18.96945 -17.84304 -16.40557 -16.23967 -15.45776 -14.95626 -14.86663 -13.74142 -13.47893 -13.44101 -13.07906 -12.71685 -12.63500 -12.54053 -12.11924 -11.87510 -11.19089 -11.06929 -11.04689 -10.38649 -9.80956 -9.70190 -9.62563 -9.49525 -8.73151 -7.24943 -6.38075 -4.44198 0.68621 1.37287 2.10804 2.52394 2.98067 3.13788 3.22210 3.25068 3.41191 3.97496 4.00501 4.23659 4.82145 4.99683 5.00584 5.21085 5.47256 5.92598 6.01206 6.36401 6.81195 7.10732 7.26691 7.39239 7.48085 7.70165 8.16408 8.31688 8.66472 9.23448 10.72304 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.051330 B = 0.004885 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.363800 B = 5730.714790 C = 6260.934022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C 0.275 3.725 3 C 0.254 3.746 4 N -0.519 5.519 5 C 0.421 3.579 6 N -0.688 5.688 7 C 0.248 3.752 8 C -0.544 4.544 9 H 0.067 0.933 10 C 0.067 3.933 11 N -0.887 5.887 12 Si 0.906 3.094 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.281 1.281 16 C -0.197 4.197 17 C -0.023 4.023 18 C -0.126 4.126 19 Cl -0.065 7.065 20 H 0.403 0.597 21 H 0.031 0.969 22 H 0.031 0.969 23 H 0.268 0.732 24 H 0.155 0.845 25 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.962 5.920 6.241 10.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.069 5.069 2 C -0.043 4.043 3 C 0.113 3.887 4 N -0.241 5.241 5 C 0.178 3.822 6 N -0.312 5.312 7 C 0.127 3.873 8 C -0.582 4.582 9 H 0.085 0.915 10 C -0.137 4.137 11 N -0.524 5.524 12 Si 0.733 3.267 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.207 1.207 16 C -0.224 4.224 17 C -0.048 4.048 18 C -0.163 4.163 19 Cl -0.036 7.036 20 H 0.238 0.762 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.077 0.923 24 H 0.172 0.828 25 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.736 5.433 5.728 11.054 hybrid contribution 1.123 -0.278 -0.294 1.194 sum -6.613 5.156 5.434 9.992 Atomic orbital electron populations 1.81166 1.11440 1.07140 1.07145 1.24933 0.91689 0.93858 0.93808 1.15677 0.85646 0.94000 0.93387 1.67151 1.08886 1.23910 1.24138 1.18516 0.86524 0.88586 0.88557 1.45641 1.09100 1.40056 1.36443 1.19395 0.71702 0.98060 0.98119 1.21165 0.92408 1.23967 1.20658 0.91525 1.24905 0.96226 0.96200 0.96417 1.69925 1.01726 1.40831 1.39952 0.86307 0.78851 0.80616 0.80911 1.19516 1.20672 1.20664 1.21813 1.02451 0.99511 0.98624 1.21139 0.90937 0.96239 0.96503 1.21266 0.93179 1.01695 1.00152 1.98351 1.76592 1.66120 1.62566 0.76183 0.95134 0.95129 0.92263 0.82785 0.83254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -6.40 18.54 41.84 0.78 -5.63 15 2 C 0.27 4.27 14.57 -22.47 -0.33 3.95 15 3 C 0.25 3.88 6.58 -85.03 -0.56 3.32 15 4 N -0.52 -8.78 10.31 -10.30 -0.11 -8.89 15 5 C 0.42 7.17 7.65 -155.14 -1.19 5.99 15 6 N -0.69 -12.96 5.72 -61.59 -0.35 -13.31 15 7 C 0.25 5.45 4.64 -5.19 -0.02 5.43 15 8 C -0.54 -13.40 9.28 -34.44 -0.32 -13.72 15 9 H 0.07 1.60 7.60 -52.49 -0.40 1.20 15 10 C 0.07 1.69 5.46 -17.82 -0.10 1.59 15 11 N -0.89 -23.41 13.29 55.43 0.74 -22.67 15 12 Si 0.91 19.60 29.54 -169.99 -5.02 14.58 15 13 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 14 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 16 C -0.20 -2.91 9.33 -39.12 -0.36 -3.27 15 17 C -0.02 -0.28 9.96 -39.33 -0.39 -0.67 15 18 C -0.13 -1.69 6.36 -38.93 -0.25 -1.94 15 19 Cl -0.06 -0.78 28.03 -51.86 -1.45 -2.24 15 20 H 0.40 7.41 8.44 -40.82 -0.34 7.06 15 21 H 0.03 0.71 7.92 -51.93 -0.41 0.30 15 22 H 0.03 0.71 7.92 -51.93 -0.41 0.30 15 23 H 0.27 6.68 8.31 -40.82 -0.34 6.34 15 24 H 0.15 2.26 6.69 -52.48 -0.35 1.91 15 25 H 0.15 1.39 8.06 -52.49 -0.42 0.97 15 LS Contribution 255.52 15.07 3.85 3.85 Total: -1.00 -25.70 255.52 -6.56 -32.26 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -1.47 Total: 1.37 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -3.52 Total: 0.67 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 1.05 Total: -50.50 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.45 Total: -2.24 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -25.70 -6.56 -32.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306531277.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.984 kcal (2) G-P(sol) polarization free energy of solvation -25.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds