Wall clock time and date at job start Sun Mar 29 2020 22:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86800 * 120.00100 * 2 1 4 4 H 1.48500 * 109.47469 * 274.98787 * 3 2 1 5 5 H 1.48503 * 109.47177 * 34.98937 * 3 2 1 6 6 H 1.48499 * 109.47289 * 154.98578 * 3 2 1 7 7 C 1.40048 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00497 * 186.12818 * 7 2 1 9 9 C 1.46376 * 119.99809 * 6.12210 * 7 2 1 10 10 O 1.21690 * 120.00345 * 353.83851 * 9 7 2 11 11 N 1.34784 * 119.99719 * 173.83503 * 9 7 2 12 12 C 1.47014 * 125.65005 * 0.02999 * 11 9 7 13 13 C 1.54327 * 107.27233 * 178.91733 * 12 11 9 14 14 C 1.55154 * 102.93899 * 337.80668 * 13 12 11 15 15 H 1.09006 * 111.00528 * 277.42794 * 14 13 12 16 16 C 1.53001 * 111.00426 * 153.57817 * 14 13 12 17 17 F 1.39897 * 109.47049 * 59.99396 * 16 14 13 18 18 F 1.39894 * 109.47178 * 179.97438 * 16 14 13 19 19 F 1.39908 * 109.46855 * 299.99886 * 16 14 13 20 20 C 1.47426 * 125.64658 * 180.02562 * 11 9 7 21 21 H 0.96997 * 119.99797 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.88462 * 59.49826 * 12 11 9 23 23 H 1.09009 * 110.01021 * 298.40654 * 12 11 9 24 24 H 1.08996 * 110.71942 * 219.43968 * 13 12 11 25 25 H 1.08998 * 110.87098 * 96.23909 * 13 12 11 26 26 H 1.08997 * 110.36671 * 85.31058 * 20 11 9 27 27 H 1.09000 * 110.36686 * 322.99172 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3829 2.1073 -1.3947 5 1 1.4950 2.6200 0.8028 6 1 3.5871 1.4120 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0824 -1.2157 0.0993 9 6 1.2814 -2.4768 -0.1363 10 8 0.0645 -2.4829 -0.1359 11 7 1.9611 -3.6339 -0.2618 12 6 3.4248 -3.7705 -0.2773 13 6 3.7432 -5.2746 -0.4122 14 6 2.4461 -5.9519 0.1038 15 1 2.4414 -6.0087 1.1923 16 6 2.2679 -7.3392 -0.5163 17 9 3.3602 -8.1451 -0.1777 18 9 1.0919 -7.9199 -0.0298 19 9 2.1892 -7.2212 -1.9082 20 6 1.3598 -4.9722 -0.4063 21 1 -0.4850 0.8400 0.0004 22 1 3.8430 -3.3850 0.6526 23 1 3.8413 -3.2260 -1.1248 24 1 4.5946 -5.5460 0.2119 25 1 3.9293 -5.5403 -1.4527 26 1 1.1283 -5.1732 -1.4522 27 1 0.4603 -5.0519 0.2043 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306664997.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:23 Heat of formation + Delta-G solvation = -195.249121 kcal Electronic energy + Delta-G solvation = -17189.911900 eV Core-core repulsion = 13725.438465 eV Total energy + Delta-G solvation = -3464.473435 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.02598 -47.52488 -47.49483 -38.60600 -35.87638 -32.58830 -31.34951 -28.95699 -26.79912 -24.86066 -22.51768 -20.87543 -19.40267 -18.44210 -18.08945 -17.51231 -16.65737 -15.61727 -14.95594 -14.44380 -14.28206 -14.23577 -13.95671 -13.72379 -13.67900 -13.61350 -13.15231 -13.02653 -12.12884 -12.04291 -11.49566 -11.22666 -11.17878 -11.04150 -10.93592 -10.69048 -10.41749 -10.23753 -8.91770 -7.75432 -7.36036 -6.28565 -4.72623 2.81060 3.09896 3.17196 3.20607 3.80143 3.96086 4.05364 4.14014 4.47448 4.51425 4.81535 4.93765 5.12983 5.50490 5.56621 5.65686 5.81167 6.16393 6.23757 6.31855 6.46957 7.19637 7.36981 7.98841 8.29750 8.94166 9.35243 10.47598 10.66461 Molecular weight = 237.07amu Principal moments of inertia in cm(-1) A = 0.054030 B = 0.006190 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.109556 B = 4522.272479 C = 4844.052527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.087 3.913 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.570 3.430 10 O -0.573 6.573 11 N -0.643 5.643 12 C 0.123 3.877 13 C -0.125 4.125 14 C -0.157 4.157 15 H 0.123 0.877 16 C 0.463 3.537 17 F -0.186 7.186 18 F -0.183 7.183 19 F -0.181 7.181 20 C 0.124 3.876 21 H 0.270 0.730 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.082 -10.482 -0.319 13.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.134 4.134 3 Si 0.735 3.265 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.574 4.574 8 H 0.089 0.911 9 C 0.378 3.622 10 O -0.455 6.455 11 N -0.384 5.384 12 C -0.001 4.001 13 C -0.163 4.163 14 C -0.177 4.177 15 H 0.141 0.859 16 C 0.409 3.591 17 F -0.168 7.168 18 F -0.165 7.165 19 F -0.162 7.162 20 C -0.001 4.001 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.160 -10.299 -0.319 12.548 hybrid contribution 0.517 0.412 -0.106 0.670 sum 7.677 -9.887 -0.426 12.525 Atomic orbital electron populations 1.70022 1.07142 1.27527 1.34744 1.25741 0.94641 1.00415 0.92554 0.86315 0.80209 0.81248 0.78768 1.19715 1.20374 1.18792 1.20869 0.94163 0.88960 1.53449 0.91056 1.18107 0.86646 0.81042 0.76450 1.90625 1.13828 1.85239 1.55831 1.48753 1.04635 1.05006 1.80044 1.21579 0.84142 0.92911 1.01503 1.22752 0.95162 0.96201 1.02154 1.23754 1.01358 0.89428 1.03168 0.85875 1.20375 0.73477 0.88670 0.76625 1.93160 1.55055 1.76388 1.92161 1.93184 1.48973 1.86562 1.87758 1.93169 1.95965 1.96172 1.30907 1.21730 0.94594 0.83570 1.00175 0.91929 0.92162 0.91964 0.89571 0.90093 0.92300 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.66 11.85 55.55 0.66 -22.00 15 2 C 0.09 2.37 5.49 -17.36 -0.10 2.28 15 3 Si 0.91 19.71 29.56 -169.99 -5.03 14.68 15 4 H -0.27 -5.78 7.11 56.52 0.40 -5.37 15 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 15 7 C -0.54 -14.89 9.05 -35.63 -0.32 -15.21 15 8 H 0.07 1.80 7.17 -52.49 -0.38 1.42 15 9 C 0.57 16.16 7.78 -12.98 -0.10 16.06 15 10 O -0.57 -18.57 15.30 5.20 0.08 -18.49 15 11 N -0.64 -14.39 3.33 -172.16 -0.57 -14.96 15 12 C 0.12 2.12 6.07 -3.07 -0.02 2.10 15 13 C -0.12 -1.63 6.18 -24.90 -0.15 -1.79 15 14 C -0.16 -2.22 3.05 -88.46 -0.27 -2.49 15 15 H 0.12 1.59 8.14 -51.93 -0.42 1.17 15 16 C 0.46 6.24 2.77 37.16 0.10 6.34 15 17 F -0.19 -2.36 17.10 2.25 0.04 -2.32 15 18 F -0.18 -2.60 17.25 2.25 0.04 -2.56 15 19 F -0.18 -2.59 15.75 2.25 0.04 -2.55 15 20 C 0.12 2.34 6.28 -2.52 -0.02 2.32 15 21 H 0.27 7.21 8.29 -40.82 -0.34 6.88 15 22 H 0.06 1.01 8.12 -51.93 -0.42 0.59 15 23 H 0.06 1.06 8.14 -51.92 -0.42 0.64 15 24 H 0.09 0.90 8.14 -51.93 -0.42 0.48 15 25 H 0.08 1.01 7.55 -51.93 -0.39 0.61 15 26 H 0.06 1.11 7.25 -51.93 -0.38 0.73 15 27 H 0.08 1.57 8.04 -51.93 -0.42 1.15 15 LS Contribution 248.97 15.07 3.75 3.75 Total: -1.00 -32.87 248.97 -4.25 -37.12 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: -2.39 Total: -2.30 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -0.87 Total: 9.62 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.09 Total: -36.96 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.08 Total: -18.49 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 0.11 Total: -7.43 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.87 -4.25 -37.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306664997.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.124 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds