Wall clock time and date at job start Sun Mar 29 2020 22:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86800 * 120.00100 * 2 1 4 4 H 1.48500 * 109.47469 * 274.98787 * 3 2 1 5 5 H 1.48503 * 109.47177 * 34.98937 * 3 2 1 6 6 H 1.48499 * 109.47289 * 154.98578 * 3 2 1 7 7 C 1.40048 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00497 * 186.12818 * 7 2 1 9 9 C 1.46376 * 119.99809 * 6.12210 * 7 2 1 10 10 O 1.21690 * 120.00345 * 353.83851 * 9 7 2 11 11 N 1.34784 * 119.99719 * 173.83503 * 9 7 2 12 12 C 1.47014 * 125.65005 * 0.02999 * 11 9 7 13 13 C 1.54327 * 107.27233 * 178.91733 * 12 11 9 14 14 C 1.55154 * 102.93899 * 337.80668 * 13 12 11 15 15 H 1.09006 * 111.00528 * 277.42794 * 14 13 12 16 16 C 1.53001 * 111.00426 * 153.57817 * 14 13 12 17 17 F 1.39897 * 109.47049 * 59.99396 * 16 14 13 18 18 F 1.39894 * 109.47178 * 179.97438 * 16 14 13 19 19 F 1.39908 * 109.46855 * 299.99886 * 16 14 13 20 20 C 1.47426 * 125.64658 * 180.02562 * 11 9 7 21 21 H 0.96997 * 119.99797 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.88462 * 59.49826 * 12 11 9 23 23 H 1.09009 * 110.01021 * 298.40654 * 12 11 9 24 24 H 1.08996 * 110.71942 * 219.43968 * 13 12 11 25 25 H 1.08998 * 110.87098 * 96.23909 * 13 12 11 26 26 H 1.08997 * 110.36671 * 85.31058 * 20 11 9 27 27 H 1.09000 * 110.36686 * 322.99172 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3829 2.1073 -1.3947 5 1 1.4950 2.6200 0.8028 6 1 3.5871 1.4120 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0824 -1.2157 0.0993 9 6 1.2814 -2.4768 -0.1363 10 8 0.0645 -2.4829 -0.1359 11 7 1.9611 -3.6339 -0.2618 12 6 3.4248 -3.7705 -0.2773 13 6 3.7432 -5.2746 -0.4122 14 6 2.4461 -5.9519 0.1038 15 1 2.4414 -6.0087 1.1923 16 6 2.2679 -7.3392 -0.5163 17 9 3.3602 -8.1451 -0.1777 18 9 1.0919 -7.9199 -0.0298 19 9 2.1892 -7.2212 -1.9082 20 6 1.3598 -4.9722 -0.4063 21 1 -0.4850 0.8400 0.0004 22 1 3.8430 -3.3850 0.6526 23 1 3.8413 -3.2260 -1.1248 24 1 4.5946 -5.5460 0.2119 25 1 3.9293 -5.5403 -1.4527 26 1 1.1283 -5.1732 -1.4522 27 1 0.4603 -5.0519 0.2043 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306664997.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:23 Heat of formation + Delta-G solvation = -217.829339 kcal Electronic energy + Delta-G solvation = -17190.891052 eV Core-core repulsion = 13725.438465 eV Total energy + Delta-G solvation = -3465.452587 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -51.12750 -48.62237 -48.59453 -40.25529 -37.79729 -34.68601 -32.96011 -30.33929 -28.72697 -26.36952 -24.02845 -22.11441 -21.20563 -19.57442 -19.28145 -18.89608 -18.24712 -17.63748 -16.41495 -16.08551 -15.55046 -15.51177 -15.38579 -15.05644 -14.78944 -14.76905 -14.66048 -14.38457 -13.83098 -13.61335 -13.22229 -12.95997 -12.74368 -12.61373 -12.43426 -12.16797 -11.99114 -11.87547 -10.95370 -9.94905 -9.20340 -8.33804 -6.88348 1.40646 1.41581 1.57926 1.66581 2.22352 2.40951 2.59984 2.78076 2.95046 3.03499 3.52693 3.64230 3.69728 4.01674 4.25605 4.33388 4.62109 4.74213 4.89357 4.93337 5.16009 5.30803 5.55745 5.98035 6.32476 6.83764 7.38722 8.39198 8.62789 Molecular weight = 237.07amu Principal moments of inertia in cm(-1) A = 0.054030 B = 0.006190 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.109556 B = 4522.272479 C = 4844.052527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 1.000 3.000 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.244 1.244 7 C -0.561 4.561 8 H 0.092 0.908 9 C 0.551 3.449 10 O -0.632 6.632 11 N -0.652 5.652 12 C 0.114 3.886 13 C -0.109 4.109 14 C -0.143 4.143 15 H 0.141 0.859 16 C 0.472 3.528 17 F -0.174 7.174 18 F -0.188 7.188 19 F -0.185 7.185 20 C 0.118 3.882 21 H 0.276 0.724 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.126 0.874 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.866 -10.655 -0.131 15.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.167 1.167 7 C -0.598 4.598 8 H 0.110 0.890 9 C 0.358 3.642 10 O -0.519 6.519 11 N -0.390 5.390 12 C -0.009 4.009 13 C -0.147 4.147 14 C -0.163 4.163 15 H 0.159 0.841 16 C 0.418 3.582 17 F -0.156 7.156 18 F -0.170 7.170 19 F -0.167 7.167 20 C -0.006 4.006 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.145 0.855 25 H 0.110 0.890 26 H 0.073 0.927 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.005 -10.535 -0.136 14.530 hybrid contribution -0.355 0.372 -0.176 0.543 sum 9.650 -10.163 -0.312 14.018 Atomic orbital electron populations 1.70196 1.09687 1.29140 1.36107 1.27040 0.95501 1.05083 0.91121 0.84973 0.79042 0.74908 0.79195 1.18835 1.19807 1.16737 1.21388 0.95273 0.89471 1.53633 0.88962 1.18492 0.86297 0.83114 0.76291 1.90566 1.16244 1.86763 1.58352 1.48500 1.07189 1.04873 1.78460 1.21869 0.80748 0.96283 1.01972 1.22765 0.95566 0.92519 1.03818 1.23630 0.99849 0.88681 1.04145 0.84147 1.20125 0.73569 0.88290 0.76244 1.93187 1.54390 1.75962 1.92040 1.93184 1.49395 1.86586 1.87792 1.93168 1.95997 1.96183 1.31329 1.21782 0.95547 0.83472 0.99845 0.91443 0.91434 0.91827 0.85535 0.88974 0.92719 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.16 11.85 21.84 0.26 -49.90 15 2 C 0.03 1.53 5.49 85.30 0.47 2.00 15 3 Si 1.00 40.06 29.56 68.60 2.03 42.09 15 4 H -0.26 -10.14 7.11 99.48 0.71 -9.43 15 5 H -0.27 -10.60 7.11 99.48 0.71 -9.90 15 6 H -0.24 -8.93 7.11 99.48 0.71 -8.22 15 7 C -0.56 -31.34 9.05 24.83 0.22 -31.12 15 8 H 0.09 4.56 7.17 -2.91 -0.02 4.54 15 9 C 0.55 32.18 7.78 86.36 0.67 32.86 15 10 O -0.63 -43.05 15.30 -4.32 -0.07 -43.12 15 11 N -0.65 -29.34 3.33 -816.82 -2.72 -32.06 15 12 C 0.11 3.70 6.07 86.73 0.53 4.23 15 13 C -0.11 -2.46 6.18 31.78 0.20 -2.26 15 14 C -0.14 -3.72 3.05 -9.40 -0.03 -3.75 15 15 H 0.14 3.22 8.14 -2.38 -0.02 3.20 15 16 C 0.47 11.60 2.77 71.98 0.20 11.80 15 17 F -0.17 -3.81 17.10 44.97 0.77 -3.05 15 18 F -0.19 -5.05 17.25 44.97 0.78 -4.27 15 19 F -0.19 -4.94 15.75 44.97 0.71 -4.23 15 20 C 0.12 4.47 6.28 86.86 0.55 5.02 15 21 H 0.28 15.18 8.29 -92.71 -0.77 14.41 15 22 H 0.07 2.10 8.12 -2.38 -0.02 2.08 15 23 H 0.06 2.05 8.14 -2.38 -0.02 2.03 15 24 H 0.13 1.96 8.14 -2.39 -0.02 1.94 15 25 H 0.09 1.93 7.55 -2.39 -0.02 1.91 15 26 H 0.05 2.10 7.25 -2.39 -0.02 2.08 15 27 H 0.05 2.29 8.04 -2.39 -0.02 2.27 15 Total: -1.00 -74.60 248.97 5.76 -68.84 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 1.20 Total: 6.92 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: 2.80 Total: 18.77 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -2.46 Total: -81.96 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -0.07 Total: -43.12 kcal Atomic # 9 Polarization: -13.80 SS G_CDS: 2.25 Total: -11.55 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -74.60 5.76 -68.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306664997.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.986 kcal (2) G-P(sol) polarization free energy of solvation -74.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds