Wall clock time and date at job start Sun Mar 29 2020 22:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86795 * 120.00401 * 2 1 4 4 H 1.48500 * 109.46983 * 270.00011 * 3 2 1 5 5 H 1.48496 * 109.47166 * 30.00110 * 3 2 1 6 6 H 1.48499 * 109.47218 * 149.99941 * 3 2 1 7 7 C 1.40055 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99987 * 179.97438 * 7 2 1 9 9 C 1.46377 * 119.99684 * 0.02562 * 7 2 1 10 10 O 1.21682 * 120.00280 * 359.97438 * 9 7 2 11 11 N 1.34784 * 119.99620 * 179.97438 * 9 7 2 12 12 C 1.47019 * 125.64840 * 359.69162 * 11 9 7 13 13 C 1.54313 * 107.27699 * 180.96622 * 12 11 9 14 14 C 1.55163 * 102.86043 * 22.52581 * 13 12 11 15 15 H 1.09000 * 110.99932 * 82.37929 * 14 13 12 16 16 C 1.53004 * 111.03572 * 206.21321 * 14 13 12 17 17 F 1.39896 * 109.46688 * 173.67074 * 16 14 13 18 18 F 1.39902 * 109.46988 * 293.67036 * 16 14 13 19 19 F 1.39898 * 109.46802 * 53.67020 * 16 14 13 20 20 C 1.47426 * 125.64612 * 179.97438 * 11 9 7 21 21 H 0.97000 * 119.99260 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.88272 * 300.51553 * 12 11 9 23 23 H 1.09008 * 109.87981 * 61.67851 * 12 11 9 24 24 H 1.09001 * 110.92343 * 264.11572 * 13 12 11 25 25 H 1.08999 * 110.74221 * 140.85581 * 13 12 11 26 26 H 1.09004 * 110.36773 * 274.67496 * 20 11 9 27 27 H 1.09000 * 110.36333 * 36.88840 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4883 2.0463 -1.4001 5 1 1.4384 2.6526 0.7000 6 1 3.5383 1.4400 0.7000 7 6 2.0069 -1.2130 0.0005 8 1 3.0869 -1.2130 0.0001 9 6 1.2749 -2.4805 0.0005 10 8 0.0581 -2.4804 0.0005 11 7 1.9487 -3.6478 0.0005 12 6 3.4117 -3.7926 -0.0059 13 6 3.7226 -5.3040 -0.0281 14 6 2.4218 -5.9156 -0.6124 15 1 2.4163 -5.8551 -1.7007 16 6 2.2364 -7.3607 -0.1454 17 9 0.9893 -7.8315 -0.5699 18 9 3.2469 -8.1602 -0.6903 19 9 2.3034 -7.4117 1.2511 20 6 1.3407 -4.9909 0.0011 21 1 -0.4849 0.8401 0.0004 22 1 3.8278 -3.3136 -0.8922 23 1 3.8327 -3.3427 0.8934 24 1 3.9063 -5.6784 0.9789 25 1 4.5728 -5.5137 -0.6772 26 1 1.1088 -5.3019 1.0197 27 1 0.4395 -4.9995 -0.6120 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306664998.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:25 Heat of formation + Delta-G solvation = -195.224959 kcal Electronic energy + Delta-G solvation = -17189.673795 eV Core-core repulsion = 13725.201407 eV Total energy + Delta-G solvation = -3464.472388 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.02544 -47.52599 -47.49306 -38.60650 -35.87596 -32.58514 -31.34707 -28.95700 -26.79682 -24.85710 -22.51984 -20.87426 -19.40216 -18.44169 -18.08700 -17.50762 -16.66855 -15.60737 -14.95326 -14.44047 -14.28255 -14.23160 -13.95504 -13.72579 -13.68010 -13.61195 -13.13964 -13.04741 -12.13787 -12.02501 -11.48068 -11.23083 -11.19201 -11.03501 -10.92495 -10.68913 -10.41778 -10.24280 -8.92162 -7.75614 -7.35941 -6.27575 -4.72996 2.81102 3.10063 3.17061 3.20448 3.80230 3.96237 4.05512 4.13990 4.46083 4.53087 4.81640 4.93591 5.13262 5.50675 5.56738 5.66674 5.81337 6.16724 6.23383 6.31734 6.47262 7.19714 7.36734 7.98803 8.29480 8.94111 9.35452 10.48009 10.66895 Molecular weight = 237.07amu Principal moments of inertia in cm(-1) A = 0.054133 B = 0.006184 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.119966 B = 4526.880234 C = 4848.141215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.086 3.914 3 Si 0.911 3.089 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.570 3.430 10 O -0.573 6.573 11 N -0.644 5.644 12 C 0.123 3.877 13 C -0.126 4.126 14 C -0.157 4.157 15 H 0.123 0.877 16 C 0.463 3.537 17 F -0.183 7.183 18 F -0.186 7.186 19 F -0.181 7.181 20 C 0.125 3.875 21 H 0.270 0.730 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.057 0.943 27 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.026 -10.469 -0.880 13.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.134 4.134 3 Si 0.735 3.265 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.574 4.574 8 H 0.089 0.911 9 C 0.377 3.623 10 O -0.455 6.455 11 N -0.385 5.385 12 C -0.001 4.001 13 C -0.164 4.164 14 C -0.177 4.177 15 H 0.141 0.859 16 C 0.409 3.591 17 F -0.164 7.164 18 F -0.168 7.168 19 F -0.162 7.162 20 C 0.000 4.000 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.100 0.900 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.104 -10.284 -0.857 12.528 hybrid contribution 0.516 0.402 0.038 0.655 sum 7.620 -9.881 -0.818 12.505 Atomic orbital electron populations 1.70017 1.07119 1.27521 1.34808 1.25747 0.94666 1.00410 0.92570 0.86322 0.80138 0.81149 0.78898 1.19664 1.20375 1.18814 1.20872 0.93644 0.88754 1.54095 0.91094 1.18102 0.86719 0.81036 0.76413 1.90624 1.13832 1.85650 1.55381 1.48759 1.04621 1.04131 1.80966 1.21581 0.84193 0.92787 1.01571 1.22769 0.95102 0.96654 1.01833 1.23755 1.01336 0.88460 1.04148 0.85878 1.20374 0.73539 0.90016 0.75217 1.93186 1.43039 1.90416 1.89779 1.93163 1.60973 1.76886 1.85767 1.93163 1.95987 1.96974 1.30123 1.21708 0.94621 0.84060 0.99588 0.91924 0.92094 0.92020 0.89971 0.89596 0.92464 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.67 11.83 55.55 0.66 -22.01 15 2 C 0.09 2.36 5.50 -17.36 -0.10 2.27 15 3 Si 0.91 19.70 29.56 -169.99 -5.02 14.68 15 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 6 H -0.26 -5.50 7.11 56.52 0.40 -5.10 15 7 C -0.54 -14.87 9.06 -35.63 -0.32 -15.19 15 8 H 0.07 1.79 7.16 -52.49 -0.38 1.41 15 9 C 0.57 16.16 7.78 -12.98 -0.10 16.06 15 10 O -0.57 -18.56 15.27 5.21 0.08 -18.48 15 11 N -0.64 -14.40 3.33 -172.17 -0.57 -14.97 15 12 C 0.12 2.12 6.04 -3.07 -0.02 2.10 15 13 C -0.13 -1.65 6.30 -24.90 -0.16 -1.80 15 14 C -0.16 -2.22 3.04 -88.46 -0.27 -2.49 15 15 H 0.12 1.59 8.14 -51.93 -0.42 1.17 15 16 C 0.46 6.25 2.77 37.16 0.10 6.35 15 17 F -0.18 -2.61 17.13 2.25 0.04 -2.57 15 18 F -0.19 -2.37 17.23 2.25 0.04 -2.33 15 19 F -0.18 -2.57 15.74 2.25 0.04 -2.53 15 20 C 0.12 2.36 6.17 -2.52 -0.02 2.34 15 21 H 0.27 7.22 8.29 -40.82 -0.34 6.88 15 22 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 23 H 0.06 1.05 8.14 -51.92 -0.42 0.63 15 24 H 0.08 1.02 7.32 -51.93 -0.38 0.64 15 25 H 0.09 0.90 8.14 -51.93 -0.42 0.48 15 26 H 0.06 1.08 7.48 -51.93 -0.39 0.69 15 27 H 0.08 1.58 8.03 -51.93 -0.42 1.16 15 LS Contribution 248.94 15.07 3.75 3.75 Total: -1.00 -32.87 248.94 -4.26 -37.13 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -2.39 Total: -2.28 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -0.88 Total: 9.63 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.08 Total: -36.99 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.08 Total: -18.48 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 0.11 Total: -7.44 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.87 -4.26 -37.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306664998.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.100 kcal (2) G-P(sol) polarization free energy of solvation -32.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds