Wall clock time and date at job start Sun Mar 29 2020 22:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86795 * 120.00401 * 2 1 4 4 H 1.48500 * 109.46983 * 270.00011 * 3 2 1 5 5 H 1.48496 * 109.47166 * 30.00110 * 3 2 1 6 6 H 1.48499 * 109.47218 * 149.99941 * 3 2 1 7 7 C 1.40055 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99987 * 179.97438 * 7 2 1 9 9 C 1.46377 * 119.99684 * 0.02562 * 7 2 1 10 10 O 1.21682 * 120.00280 * 359.97438 * 9 7 2 11 11 N 1.34784 * 119.99620 * 179.97438 * 9 7 2 12 12 C 1.47019 * 125.64840 * 359.69162 * 11 9 7 13 13 C 1.54313 * 107.27699 * 180.96622 * 12 11 9 14 14 C 1.55163 * 102.86043 * 22.52581 * 13 12 11 15 15 H 1.09000 * 110.99932 * 82.37929 * 14 13 12 16 16 C 1.53004 * 111.03572 * 206.21321 * 14 13 12 17 17 F 1.39896 * 109.46688 * 173.67074 * 16 14 13 18 18 F 1.39902 * 109.46988 * 293.67036 * 16 14 13 19 19 F 1.39898 * 109.46802 * 53.67020 * 16 14 13 20 20 C 1.47426 * 125.64612 * 179.97438 * 11 9 7 21 21 H 0.97000 * 119.99260 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.88272 * 300.51553 * 12 11 9 23 23 H 1.09008 * 109.87981 * 61.67851 * 12 11 9 24 24 H 1.09001 * 110.92343 * 264.11572 * 13 12 11 25 25 H 1.08999 * 110.74221 * 140.85581 * 13 12 11 26 26 H 1.09004 * 110.36773 * 274.67496 * 20 11 9 27 27 H 1.09000 * 110.36333 * 36.88840 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4883 2.0463 -1.4001 5 1 1.4384 2.6526 0.7000 6 1 3.5383 1.4400 0.7000 7 6 2.0069 -1.2130 0.0005 8 1 3.0869 -1.2130 0.0001 9 6 1.2749 -2.4805 0.0005 10 8 0.0581 -2.4804 0.0005 11 7 1.9487 -3.6478 0.0005 12 6 3.4117 -3.7926 -0.0059 13 6 3.7226 -5.3040 -0.0281 14 6 2.4218 -5.9156 -0.6124 15 1 2.4163 -5.8551 -1.7007 16 6 2.2364 -7.3607 -0.1454 17 9 0.9893 -7.8315 -0.5699 18 9 3.2469 -8.1602 -0.6903 19 9 2.3034 -7.4117 1.2511 20 6 1.3407 -4.9909 0.0011 21 1 -0.4849 0.8401 0.0004 22 1 3.8278 -3.3136 -0.8922 23 1 3.8327 -3.3427 0.8934 24 1 3.9063 -5.6784 0.9789 25 1 4.5728 -5.5137 -0.6772 26 1 1.1088 -5.3019 1.0197 27 1 0.4395 -4.9995 -0.6120 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306664998.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:24 Heat of formation + Delta-G solvation = -217.806428 kcal Electronic energy + Delta-G solvation = -17190.653001 eV Core-core repulsion = 13725.201407 eV Total energy + Delta-G solvation = -3465.451593 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -51.12776 -48.62137 -48.59653 -40.25661 -37.79782 -34.68278 -32.95871 -30.34055 -28.72503 -26.36672 -24.03172 -22.11324 -21.20670 -19.57334 -19.27993 -18.89105 -18.25989 -17.62964 -16.41091 -16.08309 -15.57379 -15.49165 -15.38458 -15.05718 -14.79149 -14.76803 -14.64330 -14.40876 -13.81336 -13.62880 -13.19552 -12.98500 -12.71309 -12.62699 -12.42986 -12.16282 -12.00764 -11.87743 -10.95105 -9.95166 -9.20384 -8.32813 -6.88808 1.40693 1.42092 1.57800 1.66504 2.22521 2.41245 2.59683 2.77856 2.95115 3.03991 3.53369 3.63739 3.70059 4.01721 4.25569 4.33418 4.62385 4.73978 4.89256 4.92763 5.16495 5.30359 5.55767 5.97891 6.32361 6.83712 7.38866 8.39549 8.63161 Molecular weight = 237.07amu Principal moments of inertia in cm(-1) A = 0.054133 B = 0.006184 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.119966 B = 4526.880234 C = 4848.141215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.027 3.973 3 Si 1.000 3.000 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.246 1.246 7 C -0.561 4.561 8 H 0.092 0.908 9 C 0.550 3.450 10 O -0.632 6.632 11 N -0.652 5.652 12 C 0.114 3.886 13 C -0.110 4.110 14 C -0.143 4.143 15 H 0.141 0.859 16 C 0.472 3.528 17 F -0.189 7.189 18 F -0.175 7.175 19 F -0.184 7.184 20 C 0.119 3.881 21 H 0.275 0.725 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.092 0.908 25 H 0.126 0.874 26 H 0.053 0.947 27 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.804 -10.621 -1.176 15.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.188 4.188 3 Si 0.819 3.181 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.169 1.169 7 C -0.597 4.597 8 H 0.110 0.890 9 C 0.358 3.642 10 O -0.519 6.519 11 N -0.391 5.391 12 C -0.009 4.009 13 C -0.147 4.147 14 C -0.163 4.163 15 H 0.158 0.842 16 C 0.418 3.582 17 F -0.170 7.170 18 F -0.156 7.156 19 F -0.166 7.166 20 C -0.005 4.005 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.111 0.889 25 H 0.145 0.855 26 H 0.071 0.929 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.942 -10.499 -1.152 14.505 hybrid contribution -0.353 0.354 0.140 0.519 sum 9.589 -10.145 -1.012 13.996 Atomic orbital electron populations 1.70196 1.09669 1.29121 1.36162 1.27045 0.95527 1.05088 0.91128 0.84980 0.78804 0.74788 0.79521 1.18469 1.19936 1.16930 1.21395 0.94793 0.89268 1.54250 0.88972 1.18490 0.86366 0.83153 0.76213 1.90565 1.16240 1.87171 1.57906 1.48508 1.07192 1.03988 1.79383 1.21871 0.80794 0.96206 1.01987 1.22781 0.95514 0.92970 1.03477 1.23631 0.99854 0.87899 1.04915 0.84155 1.20124 0.73530 0.89585 0.74990 1.93184 1.43564 1.90435 1.89821 1.93189 1.60394 1.76464 1.85576 1.93165 1.95990 1.96968 1.30464 1.21759 0.95533 0.83759 0.99490 0.91457 0.91348 0.91907 0.88896 0.85529 0.92875 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.18 11.83 21.84 0.26 -49.92 15 2 C 0.03 1.50 5.50 85.31 0.47 1.97 15 3 Si 1.00 40.03 29.56 68.60 2.03 42.06 15 4 H -0.26 -9.88 7.11 99.48 0.71 -9.17 15 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 15 6 H -0.25 -9.05 7.11 99.48 0.71 -8.34 15 7 C -0.56 -31.31 9.06 24.83 0.23 -31.08 15 8 H 0.09 4.55 7.16 -2.91 -0.02 4.53 15 9 C 0.55 32.18 7.78 86.36 0.67 32.85 15 10 O -0.63 -43.04 15.27 -4.29 -0.07 -43.10 15 11 N -0.65 -29.38 3.33 -816.84 -2.72 -32.10 15 12 C 0.11 3.71 6.04 86.73 0.52 4.24 15 13 C -0.11 -2.48 6.30 31.78 0.20 -2.28 15 14 C -0.14 -3.72 3.04 -9.39 -0.03 -3.75 15 15 H 0.14 3.23 8.14 -2.39 -0.02 3.21 15 16 C 0.47 11.61 2.77 71.98 0.20 11.81 15 17 F -0.19 -5.13 17.13 44.97 0.77 -4.36 15 18 F -0.17 -3.84 17.23 44.97 0.77 -3.07 15 19 F -0.18 -4.85 15.74 44.97 0.71 -4.14 15 20 C 0.12 4.52 6.17 86.86 0.54 5.05 15 21 H 0.28 15.19 8.29 -92.71 -0.77 14.42 15 22 H 0.07 2.13 8.14 -2.39 -0.02 2.11 15 23 H 0.06 2.03 8.14 -2.38 -0.02 2.01 15 24 H 0.09 1.96 7.32 -2.39 -0.02 1.94 15 25 H 0.13 1.95 8.14 -2.39 -0.02 1.93 15 26 H 0.05 2.04 7.48 -2.38 -0.02 2.02 15 27 H 0.05 2.30 8.03 -2.39 -0.02 2.28 15 Total: -1.00 -74.61 248.94 5.75 -68.86 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 1.20 Total: 6.96 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: 2.80 Total: 18.81 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -2.46 Total: -82.02 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -0.07 Total: -43.10 kcal Atomic # 9 Polarization: -13.81 SS G_CDS: 2.25 Total: -11.56 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -74.61 5.75 -68.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306664998.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.951 kcal (2) G-P(sol) polarization free energy of solvation -74.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds