Wall clock time and date at job start Sun Mar 29 2020 22:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39794 * 120.10035 * 260.27831 * 3 2 1 5 5 C 1.37693 * 119.91162 * 179.76835 * 4 3 2 6 6 C 1.39022 * 120.12946 * 0.50928 * 5 4 3 7 7 O 1.35756 * 119.89146 * 179.71809 * 6 5 4 8 8 C 1.42901 * 117.00268 * 0.02562 * 7 6 5 9 9 C 1.50702 * 109.46841 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00027 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99570 * 179.97438 * 9 8 7 12 12 N 1.31509 * 119.99861 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99747 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46915 * 60.00056 * 13 11 9 15 15 H 1.48496 * 109.47110 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47330 * 300.00463 * 13 11 9 17 17 C 1.38884 * 120.20872 * 359.74576 * 6 5 4 18 18 C 1.37913 * 120.08235 * 359.97438 * 17 6 5 19 19 Cl 1.73599 * 120.06102 * 179.97438 * 18 17 6 20 20 H 1.07996 * 120.04885 * 0.02562 * 4 3 2 21 21 H 1.08001 * 119.93201 * 180.24843 * 5 4 3 22 22 H 1.08997 * 109.46669 * 299.99383 * 8 7 6 23 23 H 1.09001 * 109.46942 * 59.99600 * 8 7 6 24 24 H 0.97010 * 119.99492 * 180.02562 * 12 11 9 25 25 H 1.08001 * 119.95700 * 180.02562 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 0.2052 1.1921 5 6 4.6459 0.2003 1.1884 6 6 5.3399 0.0029 0.0001 7 8 6.6974 0.0047 0.0011 8 6 7.3450 0.2145 1.2575 9 6 8.8392 0.1834 1.0639 10 1 9.2529 0.0194 0.0798 11 6 9.6781 0.3643 2.1430 12 7 9.1743 0.5645 3.3412 13 14 11.5302 0.3251 1.9031 14 1 11.9293 1.3961 0.9549 15 1 12.2032 0.5444 3.2085 16 1 11.9305 -0.9957 1.3549 17 6 4.6487 -0.1955 -1.1881 18 6 3.2696 -0.1980 -1.1935 19 17 2.4062 -0.4454 -2.6791 20 1 2.7314 0.3627 2.1154 21 1 5.1878 0.3543 2.1099 22 1 7.0506 1.1834 1.6606 23 1 7.0526 -0.5724 1.9528 24 1 9.7646 0.6921 4.1004 25 1 5.1919 -0.3489 -2.1089 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306712250.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:04 Heat of formation + Delta-G solvation = -15.641348 kcal Electronic energy + Delta-G solvation = -13302.940672 eV Core-core repulsion = 10692.988424 eV Total energy + Delta-G solvation = -2609.952247 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.030 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.21069 -39.08054 -37.63304 -37.12139 -35.02687 -32.29381 -31.51084 -29.61404 -25.57867 -24.43409 -23.31353 -20.14838 -19.12306 -18.58670 -17.29252 -16.60703 -16.49168 -16.10672 -15.28097 -15.25882 -14.99067 -14.61457 -14.08908 -13.87120 -13.66538 -13.27035 -13.07572 -13.00621 -12.60899 -12.47912 -12.15766 -12.02638 -11.80506 -11.35391 -10.67514 -10.03843 -9.29615 -8.35844 -6.48324 -0.35764 0.07270 0.78880 1.45035 1.47347 1.55721 1.56074 1.83516 2.26856 2.59119 2.67975 2.83596 3.00467 3.67431 3.91935 4.08288 4.24214 4.61378 4.74621 4.77281 5.03159 5.05354 5.21427 5.37048 5.56058 5.85539 6.38128 6.46481 6.73344 7.22816 8.75231 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.051453 B = 0.004955 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.053927 B = 5649.100751 C = 6178.010379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.283 3.717 3 C -0.082 4.082 4 C 0.003 3.997 5 C -0.213 4.213 6 C 0.171 3.829 7 O -0.322 6.322 8 C 0.204 3.796 9 C -0.558 4.558 10 H 0.067 0.933 11 C 0.017 3.983 12 N -0.921 5.921 13 Si 0.979 3.021 14 H -0.266 1.266 15 H -0.277 1.277 16 H -0.266 1.266 17 C -0.155 4.155 18 C 0.050 3.950 19 Cl -0.045 7.045 20 H 0.172 0.828 21 H 0.143 0.857 22 H 0.017 0.983 23 H 0.017 0.983 24 H 0.273 0.727 25 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.445 -0.956 -5.706 10.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.031 4.031 3 C -0.087 4.087 4 C -0.017 4.017 5 C -0.232 4.232 6 C 0.122 3.878 7 O -0.234 6.234 8 C 0.132 3.868 9 C -0.596 4.596 10 H 0.086 0.914 11 C -0.184 4.184 12 N -0.560 5.560 13 Si 0.802 3.198 14 H -0.191 1.191 15 H -0.202 1.202 16 H -0.191 1.191 17 C -0.175 4.175 18 C 0.020 3.980 19 Cl -0.016 7.016 20 H 0.190 0.810 21 H 0.161 0.839 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.082 0.918 25 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.081 -0.972 -5.806 11.674 hybrid contribution 1.248 0.033 0.199 1.264 sum -8.833 -0.938 -5.608 10.505 Atomic orbital electron populations 1.81215 1.12507 1.10651 1.08053 1.25326 0.92152 0.92654 0.93017 1.15648 0.84212 1.14950 0.93905 1.21118 0.92412 0.91270 0.96887 1.21525 0.95279 1.07976 0.98458 1.19579 0.83945 0.90251 0.94067 1.86078 1.15388 1.84218 1.37674 1.20412 0.91902 0.95761 0.78769 1.21287 0.90453 1.51965 0.95863 0.91432 1.25802 1.04699 0.93687 0.94162 1.70009 1.37841 1.48069 1.00038 0.85280 0.77400 0.79320 0.77782 1.19113 1.20219 1.19101 1.20177 0.91110 1.07954 0.98227 1.20464 0.91343 0.99432 0.86751 1.98396 1.76085 1.94679 1.32445 0.81030 0.83922 0.96541 0.96548 0.91772 0.82343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -12.99 18.54 19.00 0.35 -12.64 15 2 C 0.28 7.30 14.38 88.33 1.27 8.57 15 3 C -0.08 -2.01 5.74 -21.26 -0.12 -2.13 15 4 C 0.00 0.08 9.75 22.52 0.22 0.30 15 5 C -0.21 -6.26 9.01 22.33 0.20 -6.06 15 6 C 0.17 5.70 6.69 22.61 0.15 5.85 15 7 O -0.32 -13.61 10.11 -90.82 -0.92 -14.52 15 8 C 0.20 9.84 4.49 71.24 0.32 10.16 15 9 C -0.56 -29.73 9.43 25.60 0.24 -29.49 15 10 H 0.07 3.56 7.81 -2.91 -0.02 3.53 15 11 C 0.02 0.87 5.46 84.66 0.46 1.33 15 12 N -0.92 -50.12 13.29 21.45 0.28 -49.84 15 13 Si 0.98 40.72 29.54 68.60 2.03 42.75 15 14 H -0.27 -10.74 7.11 99.48 0.71 -10.04 15 15 H -0.28 -11.13 7.11 99.48 0.71 -10.43 15 16 H -0.27 -10.74 7.11 99.48 0.71 -10.03 15 17 C -0.16 -4.31 9.75 22.35 0.22 -4.09 15 18 C 0.05 1.25 6.34 22.59 0.14 1.39 15 19 Cl -0.05 -1.05 28.02 -2.72 -0.08 -1.13 15 20 H 0.17 2.88 8.06 -2.91 -0.02 2.85 15 21 H 0.14 4.47 6.27 -2.91 -0.02 4.45 15 22 H 0.02 0.83 7.65 -2.39 -0.02 0.81 15 23 H 0.02 0.82 7.65 -2.39 -0.02 0.81 15 24 H 0.27 13.93 8.31 -92.70 -0.77 13.16 15 25 H 0.16 4.01 8.06 -2.91 -0.02 3.99 15 Total: -1.00 -56.44 255.67 6.00 -50.44 By element: Atomic # 1 Polarization: -2.12 SS G_CDS: 1.23 Total: -0.90 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 3.10 Total: -14.17 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 0.64 Total: -62.48 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.92 Total: -14.52 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.13 kcal Total: -56.44 6.00 -50.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306712250.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.801 kcal (2) G-P(sol) polarization free energy of solvation -56.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds