Wall clock time and date at job start Sun Mar 29 2020 22:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39746 * 120.18050 * 330.77593 * 3 2 1 5 5 C 1.37775 * 119.91218 * 179.97438 * 4 3 2 6 6 C 1.38654 * 120.28280 * 0.02562 * 5 4 3 7 7 Cl 1.73603 * 119.81664 * 180.02562 * 6 5 4 8 8 C 1.38243 * 120.36625 * 359.74521 * 6 5 4 9 9 C 1.38593 * 120.07899 * 0.50730 * 8 6 5 10 10 O 1.35709 * 120.14306 * 179.76575 * 9 8 6 11 11 C 1.42903 * 116.99720 * 359.73092 * 10 9 8 12 12 C 1.50701 * 109.46878 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 H 1.08002 * 120.04159 * 0.02562 * 4 3 2 21 21 H 1.07999 * 119.85277 * 180.02562 * 5 4 3 22 22 H 1.08003 * 119.96295 * 180.28344 * 8 6 5 23 23 H 1.09002 * 109.47382 * 59.99602 * 11 10 9 24 24 H 1.09001 * 109.46938 * 299.99588 * 11 10 9 25 25 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2710 -1.0533 0.5898 5 6 4.6487 -1.0473 0.5862 6 6 5.3418 0.0008 0.0000 7 17 7.0778 -0.0043 0.0018 8 6 4.6581 1.0469 -0.5909 9 6 3.2722 1.0589 -0.5913 10 8 2.5997 2.0876 -1.1668 11 6 3.3843 3.1301 -1.7498 12 6 2.4725 4.1769 -2.3362 13 1 1.4011 4.0582 -2.2699 14 6 3.0061 5.2866 -2.9565 15 7 4.3107 5.4314 -3.0368 16 14 1.8758 6.5845 -3.6827 17 1 1.0185 7.1505 -2.6103 18 1 2.6910 7.6678 -4.2887 19 1 1.0194 5.9669 -4.7269 20 1 2.7349 -1.8719 1.0471 21 1 5.1910 -1.8625 1.0419 22 1 5.2045 1.8578 -1.0496 23 1 4.0134 2.7145 -2.5370 24 1 4.0131 3.5834 -0.9836 25 1 4.6861 6.2120 -3.4735 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306879524.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:44 Heat of formation + Delta-G solvation = -1.015767 kcal Electronic energy + Delta-G solvation = -13500.476912 eV Core-core repulsion = 10891.158878 eV Total energy + Delta-G solvation = -2609.318035 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.030 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.96456 -37.36418 -36.55966 -35.78822 -33.05712 -31.09394 -30.11889 -27.70965 -23.97521 -23.39060 -21.64751 -19.02993 -17.35245 -16.78633 -15.84596 -15.26674 -15.15628 -14.57620 -14.25701 -13.48920 -13.42948 -12.98164 -12.89889 -12.63530 -12.20027 -11.74788 -11.42187 -11.21453 -11.09748 -11.01009 -10.92584 -10.35422 -10.31754 -9.47853 -8.84041 -8.71165 -7.96613 -6.35128 -4.39906 0.74796 1.42661 2.07454 2.99640 3.06730 3.21660 3.24791 3.27657 3.80068 3.97094 4.15184 4.29842 4.83789 5.02652 5.08106 5.25601 5.49502 5.65168 5.97530 6.17738 6.22987 6.59142 6.66004 6.92911 7.52253 7.77038 7.82124 8.12774 8.69470 9.25987 10.75722 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.022223 B = 0.007175 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.634274 B = 3901.339110 C = 5145.827763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.273 3.727 3 C -0.084 4.084 4 C -0.021 4.021 5 C -0.172 4.172 6 C 0.035 3.965 7 Cl -0.066 7.066 8 C -0.207 4.207 9 C 0.214 3.786 10 O -0.300 6.300 11 C 0.188 3.812 12 C -0.530 4.530 13 H 0.071 0.929 14 C 0.064 3.936 15 N -0.892 5.892 16 Si 0.914 3.086 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.273 1.273 20 H 0.143 0.857 21 H 0.139 0.861 22 H 0.155 0.845 23 H 0.030 0.970 24 H 0.030 0.970 25 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.022 -11.184 6.251 13.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.042 4.042 3 C -0.088 4.088 4 C -0.042 4.042 5 C -0.191 4.191 6 C 0.008 3.992 7 Cl -0.037 7.037 8 C -0.226 4.226 9 C 0.161 3.839 10 O -0.210 6.210 11 C 0.116 3.884 12 C -0.567 4.567 13 H 0.089 0.911 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.741 3.259 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.198 1.198 20 H 0.160 0.840 21 H 0.157 0.843 22 H 0.173 0.827 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.354 -10.972 6.133 13.010 hybrid contribution 0.484 0.896 -0.499 1.134 sum 3.838 -10.077 5.634 12.166 Atomic orbital electron populations 1.81156 1.11981 1.08044 1.09216 1.25214 0.92203 0.93405 0.93371 1.15414 0.84939 0.97947 1.10534 1.20815 0.93119 0.95551 0.94669 1.20682 0.93487 0.99490 1.05399 1.20900 0.84565 0.95670 0.98108 1.98379 1.09842 1.98364 1.97087 1.21297 0.93105 1.01528 1.06686 1.19035 0.89611 0.87245 0.87987 1.86203 1.38053 1.29826 1.66966 1.20895 0.92100 0.82508 0.92867 1.20880 0.93969 1.04114 1.37768 0.91070 1.24905 0.95558 0.97923 0.95487 1.69921 1.10468 1.29662 1.42901 0.86282 0.80069 0.80134 0.79443 1.19769 1.20870 1.19773 0.83958 0.84304 0.82708 0.95265 0.95264 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.15 18.54 41.84 0.78 -7.37 15 2 C 0.27 4.73 14.87 -22.48 -0.33 4.39 15 3 C -0.08 -1.29 5.75 -106.67 -0.61 -1.90 15 4 C -0.02 -0.24 9.75 -39.19 -0.38 -0.62 15 5 C -0.17 -1.89 9.80 -39.60 -0.39 -2.27 15 6 C 0.04 0.47 6.32 -39.43 -0.25 0.22 15 7 Cl -0.07 -0.81 28.94 -51.86 -1.50 -2.31 15 8 C -0.21 -3.35 8.80 -39.45 -0.35 -3.70 15 9 C 0.21 3.86 6.69 -38.72 -0.26 3.60 15 10 O -0.30 -6.74 9.55 -18.83 -0.18 -6.92 15 11 C 0.19 4.65 4.49 36.01 0.16 4.81 15 12 C -0.53 -14.58 9.43 -34.44 -0.32 -14.90 15 13 H 0.07 1.97 7.81 -52.49 -0.41 1.56 15 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 15 N -0.89 -24.80 13.29 55.43 0.74 -24.07 15 16 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 15 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 20 H 0.14 1.16 8.06 -52.49 -0.42 0.74 15 21 H 0.14 1.13 8.06 -52.49 -0.42 0.71 15 22 H 0.16 2.69 6.30 -52.48 -0.33 2.36 15 23 H 0.03 0.74 7.65 -51.93 -0.40 0.34 15 24 H 0.03 0.74 7.67 -51.93 -0.40 0.34 15 25 H 0.27 7.06 8.31 -40.82 -0.34 6.72 15 LS Contribution 256.41 15.07 3.86 3.86 Total: -1.00 -28.65 256.41 -5.68 -34.32 By element: Atomic # 1 Polarization: -3.14 SS G_CDS: -1.52 Total: -4.66 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -2.83 Total: -8.72 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 1.51 Total: -31.44 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.18 Total: -6.92 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.65 -5.68 -34.32 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306879524.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.308 kcal (2) G-P(sol) polarization free energy of solvation -28.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds