Wall clock time and date at job start Sun Mar 29 2020 22:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39746 * 120.18050 * 330.77593 * 3 2 1 5 5 C 1.37775 * 119.91218 * 179.97438 * 4 3 2 6 6 C 1.38654 * 120.28280 * 0.02562 * 5 4 3 7 7 Cl 1.73603 * 119.81664 * 180.02562 * 6 5 4 8 8 C 1.38243 * 120.36625 * 359.74521 * 6 5 4 9 9 C 1.38593 * 120.07899 * 0.50730 * 8 6 5 10 10 O 1.35709 * 120.14306 * 179.76575 * 9 8 6 11 11 C 1.42903 * 116.99720 * 359.73092 * 10 9 8 12 12 C 1.50701 * 109.46878 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 H 1.08002 * 120.04159 * 0.02562 * 4 3 2 21 21 H 1.07999 * 119.85277 * 180.02562 * 5 4 3 22 22 H 1.08003 * 119.96295 * 180.28344 * 8 6 5 23 23 H 1.09002 * 109.47382 * 59.99602 * 11 10 9 24 24 H 1.09001 * 109.46938 * 299.99588 * 11 10 9 25 25 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2710 -1.0533 0.5898 5 6 4.6487 -1.0473 0.5862 6 6 5.3418 0.0008 0.0000 7 17 7.0778 -0.0043 0.0018 8 6 4.6581 1.0469 -0.5909 9 6 3.2722 1.0589 -0.5913 10 8 2.5997 2.0876 -1.1668 11 6 3.3843 3.1301 -1.7498 12 6 2.4725 4.1769 -2.3362 13 1 1.4011 4.0582 -2.2699 14 6 3.0061 5.2866 -2.9565 15 7 4.3107 5.4314 -3.0368 16 14 1.8758 6.5845 -3.6827 17 1 1.0185 7.1505 -2.6103 18 1 2.6910 7.6678 -4.2887 19 1 1.0194 5.9669 -4.7269 20 1 2.7349 -1.8719 1.0471 21 1 5.1910 -1.8625 1.0419 22 1 5.2045 1.8578 -1.0496 23 1 4.0134 2.7145 -2.5370 24 1 4.0131 3.5834 -0.9836 25 1 4.6861 6.2120 -3.4735 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306879524.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:44 Heat of formation + Delta-G solvation = -17.546495 kcal Electronic energy + Delta-G solvation = -13501.193738 eV Core-core repulsion = 10891.158878 eV Total energy + Delta-G solvation = -2610.034861 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.030 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.29799 -38.75086 -37.80051 -37.04825 -35.09819 -32.30755 -31.42034 -29.58646 -25.58001 -24.78604 -23.05099 -20.36705 -18.76523 -18.63011 -17.33888 -16.76793 -16.62354 -16.23524 -15.48956 -14.93861 -14.86475 -14.40309 -14.09220 -13.95581 -13.84949 -13.14588 -13.08246 -12.90190 -12.61660 -12.57786 -12.12461 -11.96868 -11.80626 -11.47247 -10.73554 -9.98787 -9.30012 -8.42114 -6.55756 -0.42800 0.27883 1.00051 1.38041 1.41042 1.49520 1.62339 1.80949 2.18323 2.50876 2.72917 2.88963 2.93312 3.76744 3.95096 4.06070 4.34822 4.52843 4.68952 4.89779 4.93328 5.08316 5.17197 5.44123 5.54436 5.77105 6.33948 6.47408 6.65151 7.15463 8.69175 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.022223 B = 0.007175 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.634274 B = 3901.339110 C = 5145.827763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.286 3.714 3 C -0.088 4.088 4 C 0.004 3.996 5 C -0.144 4.144 6 C 0.036 3.964 7 Cl -0.053 7.053 8 C -0.219 4.219 9 C 0.178 3.822 10 O -0.328 6.328 11 C 0.208 3.792 12 C -0.562 4.562 13 H 0.060 0.940 14 C 0.020 3.980 15 N -0.918 5.918 16 Si 0.979 3.021 17 H -0.268 1.268 18 H -0.271 1.271 19 H -0.268 1.268 20 H 0.189 0.811 21 H 0.184 0.816 22 H 0.132 0.868 23 H 0.015 0.985 24 H 0.015 0.985 25 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.516 -12.831 7.174 15.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.028 4.028 3 C -0.092 4.092 4 C -0.016 4.016 5 C -0.162 4.162 6 C 0.008 3.992 7 Cl -0.024 7.024 8 C -0.239 4.239 9 C 0.127 3.873 10 O -0.241 6.241 11 C 0.135 3.865 12 C -0.599 4.599 13 H 0.078 0.922 14 C -0.180 4.180 15 N -0.556 5.556 16 Si 0.802 3.198 17 H -0.193 1.193 18 H -0.195 1.195 19 H -0.193 1.193 20 H 0.206 0.794 21 H 0.201 0.799 22 H 0.150 0.850 23 H 0.033 0.967 24 H 0.033 0.967 25 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.862 -12.647 7.071 14.995 hybrid contribution 0.458 1.238 -0.691 1.490 sum 4.321 -11.409 6.380 13.767 Atomic orbital electron populations 1.81158 1.13075 1.09272 1.10602 1.25539 0.92575 0.92361 0.92335 1.15657 0.84013 0.98443 1.11114 1.21337 0.93278 0.94712 0.92247 1.21208 0.93332 0.98996 1.02689 1.21058 0.85335 0.95349 0.97437 1.98390 1.08719 1.98297 1.96952 1.21110 0.92472 1.02320 1.07953 1.19319 0.90579 0.87338 0.90091 1.86101 1.38457 1.30860 1.68654 1.20371 0.91328 0.82829 0.91926 1.21217 0.93906 1.05754 1.39027 0.92193 1.25792 0.97096 0.99738 0.95406 1.70006 1.11960 1.30432 1.43215 0.85288 0.78243 0.77541 0.78735 1.19251 1.19506 1.19259 0.79391 0.79852 0.84974 0.96726 0.96734 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -17.65 18.54 19.00 0.35 -17.30 15 2 C 0.29 9.74 14.87 88.33 1.31 11.06 15 3 C -0.09 -2.58 5.75 -21.19 -0.12 -2.70 15 4 C 0.00 0.08 9.75 22.52 0.22 0.30 15 5 C -0.14 -2.49 9.80 22.26 0.22 -2.27 15 6 C 0.04 0.88 6.32 22.37 0.14 1.02 15 7 Cl -0.05 -1.19 28.94 -2.72 -0.08 -1.27 15 8 C -0.22 -7.20 8.80 22.36 0.20 -7.01 15 9 C 0.18 6.53 6.69 22.83 0.15 6.68 15 10 O -0.33 -15.55 9.55 -90.30 -0.86 -16.41 15 11 C 0.21 10.92 4.49 71.24 0.32 11.24 15 12 C -0.56 -32.19 9.43 25.60 0.24 -31.95 15 13 H 0.06 3.47 7.81 -2.91 -0.02 3.45 15 14 C 0.02 1.12 5.46 84.66 0.46 1.58 15 15 N -0.92 -52.15 13.29 21.45 0.28 -51.87 15 16 Si 0.98 43.13 29.54 68.60 2.03 45.16 15 17 H -0.27 -11.51 7.11 99.48 0.71 -10.81 15 18 H -0.27 -11.26 7.11 99.48 0.71 -10.56 15 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 15 20 H 0.19 1.87 8.06 -2.91 -0.02 1.85 15 21 H 0.18 1.72 8.06 -2.91 -0.02 1.69 15 22 H 0.13 4.91 6.30 -2.91 -0.02 4.89 15 23 H 0.01 0.80 7.65 -2.39 -0.02 0.78 15 24 H 0.01 0.80 7.67 -2.39 -0.02 0.78 15 25 H 0.28 14.54 8.31 -92.71 -0.77 13.77 15 Total: -1.00 -64.80 256.41 6.09 -58.71 By element: Atomic # 1 Polarization: -6.20 SS G_CDS: 1.23 Total: -4.97 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 3.14 Total: -12.05 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: 0.64 Total: -69.16 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.86 Total: -16.41 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -64.80 6.09 -58.71 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306879524.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.163 kcal (2) G-P(sol) polarization free energy of solvation -64.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds