Wall clock time and date at job start Sun Mar 29 2020 22:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00295 * 2 1 4 4 H 1.48505 * 109.47146 * 269.99923 * 3 2 1 5 5 H 1.48496 * 109.47154 * 29.99988 * 3 2 1 6 6 H 1.48496 * 109.47070 * 150.00162 * 3 2 1 7 7 C 1.38815 * 119.99633 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00348 * 359.97438 * 7 2 1 9 9 N 1.36944 * 119.99835 * 180.02562 * 7 2 1 10 10 C 1.46496 * 119.99570 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.88984 * 31.48251 * 10 9 7 12 12 C 1.54348 * 110.82053 * 267.96781 * 10 9 7 13 13 C 1.51378 * 105.10801 * 215.21035 * 12 10 9 14 14 C 1.38503 * 130.37130 * 196.72303 * 13 12 10 15 15 C 1.38088 * 120.23312 * 180.40652 * 14 13 12 16 16 C 1.38373 * 119.91803 * 0.25915 * 15 14 13 17 17 Cl 1.73599 * 120.04503 * 179.97438 * 16 15 14 18 18 C 1.38218 * 119.90584 * 359.97438 * 16 15 14 19 19 C 1.38228 * 109.75258 * 17.58743 * 13 12 10 20 20 C 1.51379 * 109.75839 * 359.58670 * 19 13 12 21 21 H 0.96996 * 119.99422 * 0.02562 * 1 2 3 22 22 H 0.96991 * 119.99692 * 359.97438 * 9 7 2 23 23 H 1.09000 * 110.30489 * 334.35588 * 12 10 9 24 24 H 1.09000 * 110.30445 * 96.50341 * 12 10 9 25 25 H 1.08002 * 119.88713 * 0.69332 * 14 13 12 26 26 H 1.08001 * 120.04008 * 180.23638 * 15 14 13 27 27 H 1.08000 * 119.89145 * 180.02562 * 18 16 15 28 28 H 1.08996 * 110.30013 * 101.99575 * 20 19 13 29 29 H 1.08996 * 110.29919 * 224.14991 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3797 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 1 3.5544 -3.2417 -0.5322 12 6 4.4300 -2.9209 1.4418 13 6 5.7857 -3.5890 1.3567 14 6 6.4257 -4.4364 2.2459 15 6 7.6843 -4.9256 1.9569 16 6 8.3111 -4.5642 0.7774 17 17 9.8936 -5.1768 0.4110 18 6 7.6755 -3.7148 -0.1086 19 6 6.4138 -3.2232 0.1809 20 6 5.5189 -2.2923 -0.6091 21 1 -0.4849 0.8401 -0.0004 22 1 3.8646 -0.3623 0.0004 23 1 4.4702 -2.0584 2.1070 24 1 3.6817 -3.6331 1.7895 25 1 5.9368 -4.7192 3.1664 26 1 8.1788 -5.5892 2.6507 27 1 8.1648 -3.4332 -1.0293 28 1 5.8520 -1.2608 -0.4956 29 1 5.5141 -2.5754 -1.6617 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307152055.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:56 Heat of formation + Delta-G solvation = 25.704314 kcal Electronic energy + Delta-G solvation = -13932.133951 eV Core-core repulsion = 11459.807681 eV Total energy + Delta-G solvation = -2472.326270 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.01305 -36.98363 -35.81188 -33.21664 -31.38215 -30.89026 -27.71247 -26.98863 -23.52880 -21.86576 -20.92238 -20.14496 -17.75089 -16.49501 -15.66917 -15.27831 -15.00128 -14.11970 -13.60113 -13.41777 -13.23114 -12.98803 -12.55815 -12.46496 -11.76973 -11.55277 -11.33024 -11.10998 -10.95350 -10.77474 -10.66944 -10.53236 -10.12316 -9.65755 -9.02521 -8.83769 -8.30333 -7.37812 -5.83636 -3.20855 1.21016 1.31228 2.07839 3.33255 3.36026 3.41675 3.65317 4.52969 4.57643 4.76257 4.92058 5.23963 5.30840 5.36502 5.42881 5.54880 5.74511 5.77980 5.84001 6.11506 6.16930 6.20620 6.28129 6.34224 6.51648 6.75423 6.77587 6.89448 7.91896 8.35296 9.12384 9.84614 10.03278 11.34236 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.056460 B = 0.005049 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.809851 B = 5543.936844 C = 5770.768820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.740 5.740 10 C 0.188 3.812 11 H 0.074 0.926 12 C -0.110 4.110 13 C -0.076 4.076 14 C -0.102 4.102 15 C -0.115 4.115 16 C -0.042 4.042 17 Cl -0.082 7.082 18 C -0.101 4.101 19 C -0.079 4.079 20 C -0.094 4.094 21 H 0.260 0.740 22 H 0.363 0.637 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.128 0.872 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.082 0.918 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.903 -8.667 2.137 19.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.189 4.189 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.381 5.381 10 C 0.077 3.923 11 H 0.092 0.908 12 C -0.150 4.150 13 C -0.077 4.077 14 C -0.120 4.120 15 C -0.133 4.133 16 C -0.069 4.069 17 Cl -0.053 7.053 18 C -0.120 4.120 19 C -0.080 4.080 20 C -0.132 4.132 21 H 0.071 0.929 22 H 0.196 0.804 23 H 0.104 0.896 24 H 0.091 0.909 25 H 0.146 0.854 26 H 0.148 0.852 27 H 0.146 0.854 28 H 0.100 0.900 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 16.753 -8.756 2.082 19.017 hybrid contribution 0.806 1.117 0.092 1.380 sum 17.558 -7.639 2.173 19.271 Atomic orbital electron populations 1.69701 1.05122 1.25958 1.56993 1.24687 0.95246 0.97268 1.01709 0.86567 0.79238 0.84946 0.77868 1.20963 1.21660 1.20264 1.19087 0.80374 0.94852 1.43626 0.89004 1.42766 1.04165 1.01633 1.89579 1.20807 0.89751 0.89756 0.91955 0.90796 1.22070 0.91061 0.99692 1.02144 1.21028 0.97454 0.95313 0.93898 1.20634 0.94116 0.97670 0.99596 1.20864 0.95359 1.01204 0.95899 1.20650 0.87758 1.01262 0.97193 1.98346 1.25389 1.86837 1.94726 1.20448 0.94533 0.97549 0.99441 1.20610 0.93447 0.97469 0.96489 1.21486 0.94586 0.97944 0.99167 0.92948 0.80365 0.89619 0.90875 0.85418 0.85236 0.85431 0.90005 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.60 13.97 55.49 0.78 -27.82 15 2 C 0.01 0.20 5.50 -17.43 -0.10 0.11 15 3 Si 0.88 21.50 27.74 -169.99 -4.71 16.78 15 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 15 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 15 6 H -0.28 -6.31 6.52 56.52 0.37 -5.94 15 7 C -0.25 -6.79 10.44 -15.06 -0.16 -6.94 15 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 15 9 N -0.74 -16.70 4.99 -52.06 -0.26 -16.96 15 10 C 0.19 3.44 3.74 -66.52 -0.25 3.19 15 11 H 0.07 1.39 8.09 -51.93 -0.42 0.97 15 12 C -0.11 -1.82 6.49 -26.84 -0.17 -1.99 15 13 C -0.08 -1.12 6.14 -104.19 -0.64 -1.76 15 14 C -0.10 -1.29 10.04 -39.54 -0.40 -1.69 15 15 C -0.11 -1.36 9.83 -39.59 -0.39 -1.75 15 16 C -0.04 -0.53 6.32 -39.54 -0.25 -0.78 15 17 Cl -0.08 -0.91 28.96 -51.86 -1.50 -2.41 15 18 C -0.10 -1.32 9.82 -39.50 -0.39 -1.70 15 19 C -0.08 -1.14 6.14 -104.21 -0.64 -1.78 15 20 C -0.09 -1.43 6.48 -26.84 -0.17 -1.60 15 21 H 0.26 7.63 8.31 -40.82 -0.34 7.29 15 22 H 0.36 8.03 5.48 -40.82 -0.22 7.81 15 23 H 0.09 1.51 8.08 -51.93 -0.42 1.09 15 24 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 25 H 0.13 1.36 8.06 -52.49 -0.42 0.94 15 26 H 0.13 1.25 8.06 -52.49 -0.42 0.82 15 27 H 0.13 1.46 8.06 -52.49 -0.42 1.04 15 28 H 0.08 1.24 7.80 -51.93 -0.41 0.83 15 29 H 0.08 1.09 8.14 -51.93 -0.42 0.66 15 LS Contribution 263.61 15.07 3.97 3.97 Total: -1.00 -29.38 263.61 -8.46 -37.84 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -3.17 Total: 5.29 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -3.55 Total: -16.69 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.52 Total: -44.79 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.78 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.38 -8.46 -37.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307152055.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.543 kcal (2) G-P(sol) polarization free energy of solvation -29.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds