Wall clock time and date at job start Sun Mar 29 2020 22:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00295 * 2 1 4 4 H 1.48505 * 109.47146 * 269.99923 * 3 2 1 5 5 H 1.48496 * 109.47154 * 29.99988 * 3 2 1 6 6 H 1.48496 * 109.47070 * 150.00162 * 3 2 1 7 7 C 1.38815 * 119.99633 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00348 * 359.97438 * 7 2 1 9 9 N 1.36944 * 119.99835 * 180.02562 * 7 2 1 10 10 C 1.46496 * 119.99570 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.88984 * 31.48251 * 10 9 7 12 12 C 1.54348 * 110.82053 * 267.96781 * 10 9 7 13 13 C 1.51378 * 105.10801 * 215.21035 * 12 10 9 14 14 C 1.38503 * 130.37130 * 196.72303 * 13 12 10 15 15 C 1.38088 * 120.23312 * 180.40652 * 14 13 12 16 16 C 1.38373 * 119.91803 * 0.25915 * 15 14 13 17 17 Cl 1.73599 * 120.04503 * 179.97438 * 16 15 14 18 18 C 1.38218 * 119.90584 * 359.97438 * 16 15 14 19 19 C 1.38228 * 109.75258 * 17.58743 * 13 12 10 20 20 C 1.51379 * 109.75839 * 359.58670 * 19 13 12 21 21 H 0.96996 * 119.99422 * 0.02562 * 1 2 3 22 22 H 0.96991 * 119.99692 * 359.97438 * 9 7 2 23 23 H 1.09000 * 110.30489 * 334.35588 * 12 10 9 24 24 H 1.09000 * 110.30445 * 96.50341 * 12 10 9 25 25 H 1.08002 * 119.88713 * 0.69332 * 14 13 12 26 26 H 1.08001 * 120.04008 * 180.23638 * 15 14 13 27 27 H 1.08000 * 119.89145 * 180.02562 * 18 16 15 28 28 H 1.08996 * 110.30013 * 101.99575 * 20 19 13 29 29 H 1.08996 * 110.29919 * 224.14991 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3797 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 1 3.5544 -3.2417 -0.5322 12 6 4.4300 -2.9209 1.4418 13 6 5.7857 -3.5890 1.3567 14 6 6.4257 -4.4364 2.2459 15 6 7.6843 -4.9256 1.9569 16 6 8.3111 -4.5642 0.7774 17 17 9.8936 -5.1768 0.4110 18 6 7.6755 -3.7148 -0.1086 19 6 6.4138 -3.2232 0.1809 20 6 5.5189 -2.2923 -0.6091 21 1 -0.4849 0.8401 -0.0004 22 1 3.8646 -0.3623 0.0004 23 1 4.4702 -2.0584 2.1070 24 1 3.6817 -3.6331 1.7895 25 1 5.9368 -4.7192 3.1664 26 1 8.1788 -5.5892 2.6507 27 1 8.1648 -3.4332 -1.0293 28 1 5.8520 -1.2608 -0.4956 29 1 5.5141 -2.5754 -1.6617 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307152055.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:55 Heat of formation + Delta-G solvation = 9.251730 kcal Electronic energy + Delta-G solvation = -13932.847389 eV Core-core repulsion = 11459.807681 eV Total energy + Delta-G solvation = -2473.039708 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.13185 -38.10225 -37.05920 -34.94828 -32.79056 -32.40746 -29.08445 -28.18722 -25.34317 -23.10321 -22.00510 -21.60374 -19.73931 -17.53061 -16.92813 -16.82960 -16.15532 -15.81238 -15.01490 -14.70126 -14.47941 -14.26867 -14.16594 -13.74532 -13.18172 -12.97969 -12.73162 -12.58560 -12.26734 -12.16398 -12.06546 -11.81567 -11.68874 -11.59017 -11.00745 -9.83260 -9.40405 -9.32997 -8.02266 -5.37086 0.17693 0.31831 1.13662 1.39543 1.42548 1.49681 2.48881 2.62744 3.26508 3.38024 3.55391 3.87113 3.99956 4.18547 4.24610 4.33235 4.39269 4.66529 4.71773 4.84721 4.94629 5.04654 5.17854 5.25630 5.27533 5.34616 5.67555 5.77790 5.84003 6.21755 7.06820 7.81564 8.01155 9.18887 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.056460 B = 0.005049 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.809851 B = 5543.936844 C = 5770.768820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.063 4.063 3 Si 0.954 3.046 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.251 1.251 7 C -0.232 4.232 8 H 0.059 0.941 9 N -0.743 5.743 10 C 0.176 3.824 11 H 0.062 0.938 12 C -0.101 4.101 13 C -0.093 4.093 14 C -0.100 4.100 15 C -0.109 4.109 16 C -0.045 4.045 17 Cl -0.068 7.068 18 C -0.102 4.102 19 C -0.088 4.088 20 C -0.083 4.083 21 H 0.258 0.742 22 H 0.368 0.632 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.147 0.853 26 H 0.155 0.845 27 H 0.143 0.857 28 H 0.085 0.915 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.882 -8.960 2.456 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.254 4.254 3 Si 0.781 3.219 4 H -0.203 1.203 5 H -0.225 1.225 6 H -0.175 1.175 7 C -0.363 4.363 8 H 0.077 0.923 9 N -0.385 5.385 10 C 0.067 3.933 11 H 0.080 0.920 12 C -0.140 4.140 13 C -0.093 4.093 14 C -0.119 4.119 15 C -0.128 4.128 16 C -0.072 4.072 17 Cl -0.039 7.039 18 C -0.121 4.121 19 C -0.089 4.089 20 C -0.121 4.121 21 H 0.067 0.933 22 H 0.202 0.798 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.165 0.835 26 H 0.173 0.827 27 H 0.161 0.839 28 H 0.104 0.896 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 19.799 -9.091 2.403 21.919 hybrid contribution -0.056 1.030 0.000 1.032 sum 19.743 -8.060 2.403 21.460 Atomic orbital electron populations 1.69885 1.07160 1.26695 1.59546 1.25505 0.96093 1.01272 1.02577 0.85424 0.78666 0.79624 0.78144 1.20340 1.22475 1.17530 1.19037 0.82433 0.93520 1.41340 0.92298 1.42711 1.02542 1.03471 1.89798 1.20989 0.91100 0.87723 0.93470 0.91996 1.21770 0.92630 0.99397 1.00238 1.20876 0.96578 0.96822 0.95072 1.20849 0.94407 0.96760 0.99838 1.21160 0.94844 1.00785 0.95996 1.20813 0.88356 1.00815 0.97216 1.98357 1.24305 1.86563 1.94665 1.20580 0.93967 0.97369 1.00193 1.20505 0.94123 0.97928 0.96342 1.21300 0.92425 0.98639 0.99755 0.93342 0.79832 0.90771 0.91416 0.83545 0.82702 0.83930 0.89626 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.26 13.97 21.65 0.30 -61.96 15 2 C -0.06 -3.64 5.50 84.86 0.47 -3.18 15 3 Si 0.95 44.51 27.74 68.60 1.90 46.41 15 4 H -0.28 -12.60 7.11 99.48 0.71 -11.90 15 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 15 6 H -0.25 -10.49 6.52 99.48 0.65 -9.84 15 7 C -0.23 -12.90 10.44 84.03 0.88 -12.03 15 8 H 0.06 3.59 8.06 -2.91 -0.02 3.56 15 9 N -0.74 -33.33 4.99 -318.62 -1.59 -34.91 15 10 C 0.18 6.41 3.74 45.91 0.17 6.58 15 11 H 0.06 2.38 8.09 -2.39 -0.02 2.36 15 12 C -0.10 -3.30 6.49 30.52 0.20 -3.10 15 13 C -0.09 -2.57 6.14 -19.59 -0.12 -2.69 15 14 C -0.10 -2.28 10.04 22.30 0.22 -2.05 15 15 C -0.11 -2.22 9.83 22.27 0.22 -2.00 15 16 C -0.05 -0.99 6.32 22.30 0.14 -0.85 15 17 Cl -0.07 -1.30 28.96 -2.72 -0.08 -1.38 15 18 C -0.10 -2.38 9.82 22.32 0.22 -2.16 15 19 C -0.09 -2.36 6.14 -19.59 -0.12 -2.48 15 20 C -0.08 -2.41 6.48 30.52 0.20 -2.21 15 21 H 0.26 15.58 8.31 -92.71 -0.77 14.81 15 22 H 0.37 15.73 5.48 -92.72 -0.51 15.22 15 23 H 0.07 2.58 8.08 -2.39 -0.02 2.56 15 24 H 0.07 2.23 8.14 -2.39 -0.02 2.21 15 25 H 0.15 2.70 8.06 -2.91 -0.02 2.68 15 26 H 0.16 2.34 8.06 -2.91 -0.02 2.31 15 27 H 0.14 2.82 8.06 -2.91 -0.02 2.80 15 28 H 0.09 2.41 7.80 -2.39 -0.02 2.40 15 29 H 0.09 2.34 8.14 -2.39 -0.02 2.32 15 Total: -1.00 -63.59 263.61 3.61 -59.99 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.59 Total: 18.01 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: 2.47 Total: -26.16 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -1.29 Total: -96.88 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.90 Total: 46.41 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -63.59 3.61 -59.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307152055.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.240 kcal (2) G-P(sol) polarization free energy of solvation -63.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds