Wall clock time and date at job start Sun Mar 29 2020 22:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00227 * 2 1 4 4 H 1.48500 * 109.47167 * 240.00400 * 3 2 1 5 5 H 1.48501 * 109.47422 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47229 * 120.00667 * 3 2 1 7 7 C 1.38815 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00303 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00005 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99930 * 180.02562 * 9 7 2 11 11 H 1.08992 * 110.88374 * 31.47974 * 10 9 7 12 12 C 1.54349 * 110.82027 * 154.99774 * 10 9 7 13 13 C 1.51374 * 105.16726 * 144.57439 * 12 10 9 14 14 C 1.38515 * 130.37043 * 162.84644 * 13 12 10 15 15 C 1.38079 * 120.23153 * 179.97438 * 14 13 12 16 16 C 1.38368 * 119.92135 * 0.11180 * 15 14 13 17 17 Cl 1.73605 * 120.04606 * 179.97438 * 16 15 14 18 18 C 1.38216 * 119.90622 * 359.83603 * 16 15 14 19 19 C 1.38224 * 109.75953 * 342.80591 * 13 12 10 20 20 C 1.51376 * 109.75437 * 0.02562 * 19 13 12 21 21 H 0.96998 * 119.99640 * 359.97438 * 1 2 3 22 22 H 0.96996 * 119.99975 * 359.97438 * 9 7 2 23 23 H 1.08994 * 110.30556 * 25.65032 * 12 10 9 24 24 H 1.08998 * 110.30094 * 263.49415 * 12 10 9 25 25 H 1.07999 * 119.88348 * 359.68078 * 14 13 12 26 26 H 1.07997 * 120.03826 * 180.02562 * 15 14 13 27 27 H 1.07999 * 119.89563 * 180.08455 * 18 16 15 28 28 H 1.08991 * 110.30180 * 258.26530 * 20 19 13 29 29 H 1.09002 * 110.29735 * 136.11256 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6962 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6569 -0.0016 11 1 3.0039 -3.5594 0.5309 12 6 1.1995 -4.7860 0.6070 13 6 1.5584 -6.0262 -0.1832 14 6 1.3526 -7.3651 0.1060 15 6 1.7709 -8.3396 -0.7782 16 6 2.4000 -7.9784 -1.9565 17 17 2.9278 -9.2011 -3.0702 18 6 2.6051 -6.6428 -2.2468 19 6 2.1845 -5.6647 -1.3613 20 6 2.2895 -4.1569 -1.4431 21 1 -0.4849 0.8401 0.0004 22 1 0.3555 -2.3880 -0.0016 23 1 0.1396 -4.5586 0.4931 24 1 1.4467 -4.9235 1.6596 25 1 0.8675 -7.6479 1.0285 26 1 1.6084 -9.3826 -0.5498 27 1 3.0949 -6.3610 -3.1671 28 1 1.5228 -3.7599 -2.1083 29 1 3.2807 -3.8652 -1.7905 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307152056.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:57 Heat of formation + Delta-G solvation = 6.235589 kcal Electronic energy + Delta-G solvation = -13885.041051 eV Core-core repulsion = 11411.870553 eV Total energy + Delta-G solvation = -2473.170498 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.09785 -38.04243 -36.98594 -34.92734 -32.44860 -32.23976 -28.79142 -28.20168 -25.62577 -23.14968 -21.94336 -21.49379 -19.31583 -17.50282 -16.90829 -16.76637 -16.06104 -15.80660 -15.16821 -14.58837 -14.45759 -14.08784 -13.89175 -13.69148 -13.13016 -12.87086 -12.70963 -12.42616 -12.30490 -12.18518 -12.06028 -11.79783 -11.64564 -11.60715 -10.95680 -9.81979 -9.36571 -9.05446 -7.95075 -5.24547 0.18274 0.33492 1.13679 1.48878 1.51250 1.57320 2.56027 2.63998 3.34699 3.55902 3.59102 3.99065 4.07000 4.23002 4.26490 4.35900 4.50039 4.64906 4.79538 4.87224 4.96992 5.06754 5.21711 5.24349 5.28318 5.40598 5.53759 5.69957 5.85672 6.26772 7.33260 8.06691 8.30772 9.27964 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.056487 B = 0.004774 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.574583 B = 5864.223254 C = 6177.499098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.073 4.073 3 Si 0.972 3.028 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.078 0.922 9 N -0.728 5.728 10 C 0.173 3.827 11 H 0.063 0.937 12 C -0.082 4.082 13 C -0.094 4.094 14 C -0.094 4.094 15 C -0.111 4.111 16 C -0.043 4.043 17 Cl -0.069 7.069 18 C -0.110 4.110 19 C -0.088 4.088 20 C -0.098 4.098 21 H 0.251 0.749 22 H 0.375 0.625 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.155 0.845 26 H 0.158 0.842 27 H 0.134 0.866 28 H 0.065 0.935 29 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.534 -17.816 -1.829 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.801 3.199 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.096 0.904 9 N -0.367 5.367 10 C 0.063 3.937 11 H 0.081 0.919 12 C -0.120 4.120 13 C -0.094 4.094 14 C -0.112 4.112 15 C -0.129 4.129 16 C -0.070 4.070 17 Cl -0.040 7.040 18 C -0.129 4.129 19 C -0.089 4.089 20 C -0.138 4.138 21 H 0.060 0.940 22 H 0.208 0.792 23 H 0.095 0.905 24 H 0.106 0.894 25 H 0.173 0.827 26 H 0.176 0.824 27 H 0.152 0.848 28 H 0.083 0.917 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.724 -17.777 -1.912 18.493 hybrid contribution -0.032 1.097 -0.359 1.154 sum 4.692 -16.680 -2.270 17.476 Atomic orbital electron populations 1.69805 1.06596 1.26187 1.59297 1.25555 0.96357 1.01076 1.03596 0.85231 0.77210 0.79228 0.78207 1.20468 1.22290 1.20300 1.19612 0.91538 0.85106 1.41353 0.90449 1.42553 1.05406 1.00625 1.88134 1.21029 0.94810 0.84886 0.92931 0.91926 1.21274 1.00407 0.90740 0.99609 1.20805 0.97901 0.94878 0.95840 1.20860 0.99650 0.90133 1.00540 1.21179 0.98333 1.01262 0.92149 1.20821 1.03183 0.89320 0.93674 1.98353 1.89285 1.54275 1.62074 1.20590 1.01543 0.90434 1.00328 1.20642 0.97899 0.95468 0.94866 1.21801 1.01670 0.89618 1.00755 0.93986 0.79235 0.90529 0.89401 0.82723 0.82390 0.84783 0.91682 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.53 13.06 21.65 0.28 -58.24 15 2 C -0.07 -4.15 5.50 84.86 0.47 -3.69 15 3 Si 0.97 45.50 29.55 68.60 2.03 47.53 15 4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 5 H -0.30 -14.04 7.11 99.48 0.71 -13.34 15 6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 15 7 C -0.24 -13.30 9.96 84.03 0.84 -12.46 15 8 H 0.08 4.03 7.83 -2.91 -0.02 4.00 15 9 N -0.73 -35.92 5.18 -318.65 -1.65 -37.57 15 10 C 0.17 6.70 3.74 45.90 0.17 6.87 15 11 H 0.06 2.43 8.09 -2.39 -0.02 2.42 15 12 C -0.08 -2.62 6.49 30.52 0.20 -2.42 15 13 C -0.09 -2.66 6.14 -19.59 -0.12 -2.78 15 14 C -0.09 -2.10 10.04 22.30 0.22 -1.88 15 15 C -0.11 -2.31 9.83 22.26 0.22 -2.09 15 16 C -0.04 -1.03 6.32 22.30 0.14 -0.89 15 17 Cl -0.07 -1.43 28.96 -2.72 -0.08 -1.51 15 18 C -0.11 -2.95 9.82 22.32 0.22 -2.74 15 19 C -0.09 -2.68 6.14 -19.60 -0.12 -2.80 15 20 C -0.10 -3.50 6.49 30.51 0.20 -3.30 15 21 H 0.25 14.80 8.31 -92.71 -0.77 14.02 15 22 H 0.38 19.83 7.62 -92.71 -0.71 19.13 15 23 H 0.08 2.56 7.80 -2.39 -0.02 2.54 15 24 H 0.09 2.51 8.14 -2.39 -0.02 2.49 15 25 H 0.16 2.59 8.06 -2.91 -0.02 2.56 15 26 H 0.16 2.39 8.06 -2.91 -0.02 2.37 15 27 H 0.13 3.30 8.06 -2.91 -0.02 3.28 15 28 H 0.06 2.56 8.08 -2.39 -0.02 2.54 15 29 H 0.07 2.35 8.14 -2.39 -0.02 2.33 15 Total: -1.00 -60.72 266.73 3.47 -57.26 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.45 Total: 20.71 kcal Atomic # 6 Polarization: -30.60 SS G_CDS: 2.43 Total: -28.17 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -1.37 Total: -95.81 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.51 kcal Total: -60.72 3.47 -57.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307152056.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.492 kcal (2) G-P(sol) polarization free energy of solvation -60.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds