Wall clock time and date at job start Sun Mar 29 2020 22:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31605 * 119.66614 * 2 1 4 4 C 1.32620 * 121.79662 * 179.97438 * 3 2 1 5 5 N 1.38465 * 119.55167 * 179.97438 * 4 3 2 6 6 C 1.36835 * 119.99753 * 359.97438 * 5 4 3 7 7 H 1.07999 * 120.00196 * 359.97438 * 6 5 4 8 8 C 1.38875 * 119.99567 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00064 * 359.71830 * 8 6 5 10 10 Si 1.86803 * 119.99580 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47271 * 89.99990 * 10 8 6 12 12 H 1.48505 * 109.46880 * 209.99471 * 10 8 6 13 13 H 1.48490 * 109.47245 * 329.99798 * 10 8 6 14 14 C 1.39575 * 120.89618 * 0.26699 * 4 3 2 15 15 Cl 1.73599 * 120.38697 * 179.72984 * 14 4 3 16 16 C 1.37972 * 119.22534 * 359.46047 * 14 4 3 17 17 C 1.39659 * 119.66847 * 179.97438 * 2 1 3 18 18 C 1.43208 * 120.46995 * 0.03995 * 17 2 1 19 19 N 3.49040 * 80.31150 * 180.02562 * 2 1 3 20 20 H 1.08999 * 109.46882 * 90.00183 * 1 2 3 21 21 H 1.08997 * 109.46790 * 210.00233 * 1 2 3 22 22 H 1.08997 * 109.47193 * 330.00058 * 1 2 3 23 23 H 0.96999 * 120.00046 * 179.97438 * 5 4 3 24 24 H 0.97000 * 119.99465 * 180.02562 * 9 8 6 25 25 H 1.07997 * 120.81973 * 180.28227 * 16 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1584 1.1436 0.0000 4 6 3.4836 1.1929 0.0005 5 7 4.1213 2.4219 -0.0001 6 6 3.3845 3.5749 -0.0017 7 1 2.3056 3.5263 -0.0029 8 6 4.0241 4.8076 -0.0028 9 7 5.3379 4.8668 0.0033 10 14 3.0181 6.3817 -0.0057 11 1 2.7504 6.8007 1.3936 12 1 3.7740 7.4508 -0.7064 13 1 1.7306 6.1450 -0.7064 14 6 4.2444 0.0226 -0.0045 15 17 5.9785 0.1026 -0.0109 16 6 3.6020 -1.1984 0.0013 17 6 2.1983 -1.2135 0.0005 18 6 1.4852 -2.4554 0.0002 19 7 0.9196 -3.4406 -0.0015 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 5.0903 2.4656 0.0007 24 1 5.7845 5.7278 0.0029 25 1 4.1653 -2.1199 0.0021 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307376589.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:48 Heat of formation + Delta-G solvation = 34.511600 kcal Electronic energy + Delta-G solvation = -13698.711499 eV Core-core repulsion = 11123.226798 eV Total energy + Delta-G solvation = -2575.484701 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.036 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.11354 -38.03446 -37.30188 -36.85573 -34.24964 -33.42953 -31.68089 -28.56850 -26.97390 -23.96047 -23.22277 -20.03317 -19.69903 -18.48585 -17.43510 -16.37707 -15.85501 -15.63982 -15.53183 -14.70286 -14.36872 -14.00545 -13.88982 -13.73918 -13.55800 -13.18138 -13.11271 -12.97688 -12.64595 -12.58893 -12.09643 -11.86742 -11.84466 -10.77591 -10.31025 -10.23122 -8.87524 -8.68823 -5.89161 0.02917 0.46897 1.31182 1.45224 1.47667 1.58487 1.93812 2.14643 2.19946 2.82010 2.86804 3.26830 3.29594 3.77213 3.92188 4.25683 4.65673 4.72542 4.83515 5.00431 5.16002 5.19433 5.29705 5.51958 5.85178 6.55132 6.73906 6.95722 7.12728 7.63875 8.45932 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.026551 B = 0.008045 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.339801 B = 3479.582160 C = 4518.768512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.247 3.753 3 N -0.555 5.555 4 C 0.351 3.649 5 N -0.505 5.505 6 C -0.308 4.308 7 H 0.119 0.881 8 C -0.015 4.015 9 N -0.902 5.902 10 Si 1.006 2.994 11 H -0.269 1.269 12 H -0.276 1.276 13 H -0.258 1.258 14 C -0.205 4.205 15 Cl -0.075 7.075 16 C 0.044 3.956 17 C -0.229 4.229 18 C 0.309 3.691 19 N -0.492 5.492 20 H 0.095 0.905 21 H 0.079 0.921 22 H 0.086 0.914 23 H 0.410 0.590 24 H 0.286 0.714 25 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.734 -3.515 -0.084 4.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.095 3.905 3 N -0.276 5.276 4 C 0.105 3.895 5 N -0.106 5.106 6 C -0.438 4.438 7 H 0.136 0.864 8 C -0.219 4.219 9 N -0.537 5.537 10 Si 0.828 3.172 11 H -0.194 1.194 12 H -0.201 1.201 13 H -0.182 1.182 14 C -0.241 4.241 15 Cl -0.047 7.047 16 C 0.018 3.982 17 C -0.243 4.243 18 C -0.003 4.003 19 N -0.171 5.171 20 H 0.114 0.886 21 H 0.098 0.902 22 H 0.105 0.895 23 H 0.248 0.752 24 H 0.096 0.904 25 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.610 -3.660 -0.088 5.141 hybrid contribution 1.408 0.437 0.014 1.474 sum -2.202 -3.223 -0.074 3.904 Atomic orbital electron populations 1.20830 0.87013 1.03919 1.04308 1.21364 0.97231 0.85732 0.86200 1.67187 1.06262 1.28558 1.25611 1.18155 0.88764 0.85162 0.97437 1.41323 1.09264 1.02611 1.57372 1.20362 0.93962 0.82927 1.46590 0.86358 1.26448 0.96997 1.03102 0.95326 1.69738 1.09166 1.29065 1.45719 0.84703 0.78098 0.75452 0.78941 1.19409 1.20104 1.18160 1.20608 0.84307 0.94072 1.25121 1.98295 1.10113 1.98432 1.97831 1.21003 0.92131 0.96223 0.88881 1.15935 0.91648 0.87338 1.29363 1.25174 0.92177 0.91776 0.91152 1.81191 1.09863 1.11554 1.14538 0.88622 0.90231 0.89481 0.75237 0.90386 0.82386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.69 9.77 71.24 0.70 -2.00 15 2 C 0.25 8.36 6.82 42.94 0.29 8.65 15 3 N -0.56 -22.57 8.96 -180.25 -1.61 -24.19 15 4 C 0.35 14.96 7.43 133.29 0.99 15.95 15 5 N -0.51 -23.71 5.36 -189.14 -1.01 -24.72 15 6 C -0.31 -14.97 9.69 84.07 0.81 -14.15 15 7 H 0.12 5.72 7.06 -2.91 -0.02 5.70 15 8 C -0.02 -0.72 5.50 84.89 0.47 -0.25 15 9 N -0.90 -44.64 13.05 21.66 0.28 -44.36 15 10 Si 1.01 37.34 29.55 68.60 2.03 39.37 15 11 H -0.27 -9.77 7.11 99.48 0.71 -9.06 15 12 H -0.28 -10.01 7.11 99.48 0.71 -9.30 15 13 H -0.26 -9.26 7.11 99.48 0.71 -8.56 15 14 C -0.21 -7.56 6.36 22.53 0.14 -7.42 15 15 Cl -0.07 -2.57 27.60 -2.72 -0.08 -2.64 15 16 C 0.04 1.41 9.69 22.73 0.22 1.63 15 17 C -0.23 -7.33 5.76 -21.17 -0.12 -7.46 15 18 C 0.31 9.64 13.82 88.33 1.22 10.86 15 19 N -0.49 -16.46 18.54 19.01 0.35 -16.11 15 20 H 0.10 2.21 8.14 -2.39 -0.02 2.19 15 21 H 0.08 1.90 7.07 -2.39 -0.02 1.88 15 22 H 0.09 2.19 8.14 -2.39 -0.02 2.17 15 23 H 0.41 19.47 6.52 -92.71 -0.60 18.86 15 24 H 0.29 13.21 8.31 -92.71 -0.77 12.44 15 25 H 0.16 4.08 8.06 -2.91 -0.02 4.06 15 Total: -1.00 -51.77 252.51 5.33 -46.44 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.65 Total: 20.39 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 4.72 Total: 5.81 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -1.99 Total: -109.37 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Atomic # 17 Polarization: -2.57 SS G_CDS: -0.08 Total: -2.64 kcal Total: -51.77 5.33 -46.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307376589.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.952 kcal (2) G-P(sol) polarization free energy of solvation -51.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds