Wall clock time and date at job start Sun Mar 29 2020 22:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39651 * 120.11385 * 113.85351 * 3 2 1 5 5 C 1.38084 * 119.94027 * 179.97438 * 4 3 2 6 6 Cl 1.73598 * 119.90305 * 180.02562 * 5 4 3 7 7 C 1.38399 * 120.18774 * 0.02562 * 5 4 3 8 8 C 1.38790 * 120.23926 * 0.02562 * 7 5 4 9 9 O 1.35910 * 119.97809 * 179.97438 * 8 7 5 10 10 C 1.42899 * 116.99593 * 0.02562 * 9 8 7 11 11 C 1.50697 * 109.47234 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99621 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00139 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99810 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00102 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47382 * 89.99882 * 15 13 11 17 17 H 1.48504 * 109.47039 * 209.99769 * 15 13 11 18 18 H 1.48498 * 109.46931 * 329.99551 * 15 13 11 19 19 C 1.38495 * 120.05203 * 0.02562 * 8 7 5 20 20 H 1.07995 * 120.02808 * 359.97438 * 4 3 2 21 21 H 1.07997 * 119.88188 * 180.02562 * 7 5 4 22 22 H 1.09008 * 109.47345 * 299.99708 * 10 9 8 23 23 H 1.09000 * 109.47306 * 59.99660 * 10 9 8 24 24 H 0.96999 * 120.00024 * 180.02562 * 14 13 11 25 25 H 1.07999 * 120.09023 * 179.72850 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 0.4895 -1.1048 5 6 4.6493 0.4889 -1.1008 6 17 5.5190 1.0974 -2.4744 7 6 5.3418 0.0046 -0.0048 8 6 4.6534 -0.4840 1.0969 9 8 5.3388 -0.9589 2.1702 10 6 6.7654 -0.9241 2.0959 11 6 7.3485 -1.4871 3.3663 12 1 6.6949 -1.8362 4.1521 13 6 8.7163 -1.5566 3.5255 14 7 9.2250 -2.0476 4.6345 15 14 9.8467 -0.9522 2.1668 16 1 10.1451 0.4874 2.3749 17 1 11.1121 -1.7290 2.1936 18 1 9.1815 -1.1349 0.8517 19 6 3.2685 -0.4891 1.1030 20 1 2.7306 0.8676 -1.9616 21 1 6.4218 0.0068 -0.0067 22 1 7.0998 -1.5211 1.2473 23 1 7.0977 0.1062 1.9686 24 1 10.1873 -2.0962 4.7467 25 1 2.7322 -0.8732 1.9581 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307436671.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:06 Heat of formation + Delta-G solvation = 5.349800 kcal Electronic energy + Delta-G solvation = -13377.710483 eV Core-core repulsion = 10768.668481 eV Total energy + Delta-G solvation = -2609.042003 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.030 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.06857 -37.74181 -36.85338 -35.91552 -32.97083 -31.26212 -30.37838 -28.33577 -24.46725 -22.65578 -22.10180 -19.18505 -17.31589 -16.52606 -16.19695 -15.76584 -15.26571 -14.90155 -14.42858 -14.05510 -13.38970 -13.20293 -13.02425 -12.86128 -12.57476 -12.01896 -11.77419 -11.37716 -11.22782 -11.09923 -11.07636 -10.39026 -10.10022 -9.52032 -8.98733 -8.86443 -8.13726 -6.34101 -4.37900 0.57073 1.16513 1.91163 2.52167 2.80870 3.10194 3.15621 3.18694 3.53260 3.70154 4.01281 4.14738 4.85961 4.95821 4.96342 4.96947 5.16134 5.50996 5.94519 5.99397 6.02307 6.25257 6.39672 6.53119 7.21401 7.30833 7.70284 8.31250 8.74150 9.20257 10.77901 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.026079 B = 0.006785 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.415943 B = 4125.749692 C = 5184.021562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C 0.265 3.735 3 C 0.019 3.981 4 C -0.119 4.119 5 C 0.006 3.994 6 Cl -0.063 7.063 7 C -0.180 4.180 8 C 0.165 3.835 9 O -0.290 6.290 10 C 0.164 3.836 11 C -0.534 4.534 12 H 0.088 0.912 13 C 0.080 3.920 14 N -0.884 5.884 15 Si 0.871 3.129 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.263 1.263 19 C -0.110 4.110 20 H 0.140 0.860 21 H 0.148 0.852 22 H 0.024 0.976 23 H 0.019 0.981 24 H 0.271 0.729 25 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.697 5.437 -12.329 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.050 4.050 3 C 0.015 3.985 4 C -0.140 4.140 5 C -0.021 4.021 6 Cl -0.034 7.034 7 C -0.201 4.201 8 C 0.116 3.884 9 O -0.202 6.202 10 C 0.091 3.909 11 C -0.571 4.571 12 H 0.106 0.894 13 C -0.124 4.124 14 N -0.521 5.521 15 Si 0.697 3.303 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.188 1.188 19 C -0.131 4.131 20 H 0.158 0.842 21 H 0.165 0.835 22 H 0.042 0.958 23 H 0.037 0.963 24 H 0.081 0.919 25 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.244 5.351 -12.141 15.621 hybrid contribution 1.525 0.399 -0.870 1.800 sum -6.719 5.751 -13.011 15.733 Atomic orbital electron populations 1.81248 1.11850 1.08442 1.07544 1.25429 0.92294 0.93673 0.93652 1.15360 0.84225 1.03493 0.95431 1.20709 0.91845 1.02954 0.98536 1.20352 0.91611 1.00426 0.89713 1.98379 1.76551 1.86139 1.42378 1.21527 1.02032 1.03466 0.93034 1.18829 0.91329 0.91126 0.87112 1.86247 1.23694 1.75466 1.34774 1.21165 0.72993 0.96823 0.99948 1.20711 0.92439 1.43077 1.00878 0.89380 1.24694 0.97409 0.94469 0.95796 1.69841 1.12918 1.44047 1.25273 0.86921 0.81093 0.79741 0.82539 1.19485 1.20310 1.18801 1.20480 0.91535 1.02386 0.98733 0.84233 0.83454 0.95837 0.96296 0.91877 0.83547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.88 18.54 41.84 0.78 -5.10 15 2 C 0.27 3.29 15.33 -22.47 -0.34 2.94 15 3 C 0.02 0.22 5.73 -106.96 -0.61 -0.39 15 4 C -0.12 -1.32 9.53 -39.11 -0.37 -1.69 15 5 C 0.01 0.07 6.31 -39.58 -0.25 -0.18 15 6 Cl -0.06 -0.73 28.95 -51.86 -1.50 -2.23 15 7 C -0.18 -2.64 8.81 -39.32 -0.35 -2.99 15 8 C 0.17 2.64 6.68 -39.28 -0.26 2.38 15 9 O -0.29 -5.88 10.12 -19.46 -0.20 -6.08 15 10 C 0.16 3.63 3.56 36.00 0.13 3.76 15 11 C -0.53 -14.39 9.99 -34.44 -0.34 -14.74 15 12 H 0.09 2.61 8.06 -52.49 -0.42 2.19 15 13 C 0.08 2.17 5.47 -17.82 -0.10 2.08 15 14 N -0.88 -25.47 13.96 55.43 0.77 -24.70 15 15 Si 0.87 19.41 27.47 -169.99 -4.67 14.74 15 16 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 18 H -0.26 -5.48 6.54 56.52 0.37 -5.11 15 19 C -0.11 -1.47 9.69 -39.00 -0.38 -1.85 15 20 H 0.14 1.25 8.06 -52.49 -0.42 0.82 15 21 H 0.15 2.23 6.28 -52.49 -0.33 1.90 15 22 H 0.02 0.51 6.71 -51.92 -0.35 0.16 15 23 H 0.02 0.41 7.08 -51.93 -0.37 0.04 15 24 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 25 H 0.15 1.79 8.06 -52.49 -0.42 1.37 15 LS Contribution 253.43 15.07 3.82 3.82 Total: -1.00 -27.84 253.43 -5.36 -33.20 By element: Atomic # 1 Polarization: -1.49 SS G_CDS: -1.48 Total: -2.97 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -2.88 Total: -10.68 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 1.55 Total: -29.80 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.20 Total: -6.08 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.67 Total: 14.74 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -27.84 -5.36 -33.20 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307436671.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.548 kcal (2) G-P(sol) polarization free energy of solvation -27.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds