Wall clock time and date at job start Sun Mar 29 2020 22:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39651 * 120.11385 * 113.85351 * 3 2 1 5 5 C 1.38084 * 119.94027 * 179.97438 * 4 3 2 6 6 Cl 1.73598 * 119.90305 * 180.02562 * 5 4 3 7 7 C 1.38399 * 120.18774 * 0.02562 * 5 4 3 8 8 C 1.38790 * 120.23926 * 0.02562 * 7 5 4 9 9 O 1.35910 * 119.97809 * 179.97438 * 8 7 5 10 10 C 1.42899 * 116.99593 * 0.02562 * 9 8 7 11 11 C 1.50697 * 109.47234 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99621 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00139 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99810 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00102 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47382 * 89.99882 * 15 13 11 17 17 H 1.48504 * 109.47039 * 209.99769 * 15 13 11 18 18 H 1.48498 * 109.46931 * 329.99551 * 15 13 11 19 19 C 1.38495 * 120.05203 * 0.02562 * 8 7 5 20 20 H 1.07995 * 120.02808 * 359.97438 * 4 3 2 21 21 H 1.07997 * 119.88188 * 180.02562 * 7 5 4 22 22 H 1.09008 * 109.47345 * 299.99708 * 10 9 8 23 23 H 1.09000 * 109.47306 * 59.99660 * 10 9 8 24 24 H 0.96999 * 120.00024 * 180.02562 * 14 13 11 25 25 H 1.07999 * 120.09023 * 179.72850 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 0.4895 -1.1048 5 6 4.6493 0.4889 -1.1008 6 17 5.5190 1.0974 -2.4744 7 6 5.3418 0.0046 -0.0048 8 6 4.6534 -0.4840 1.0969 9 8 5.3388 -0.9589 2.1702 10 6 6.7654 -0.9241 2.0959 11 6 7.3485 -1.4871 3.3663 12 1 6.6949 -1.8362 4.1521 13 6 8.7163 -1.5566 3.5255 14 7 9.2250 -2.0476 4.6345 15 14 9.8467 -0.9522 2.1668 16 1 10.1451 0.4874 2.3749 17 1 11.1121 -1.7290 2.1936 18 1 9.1815 -1.1349 0.8517 19 6 3.2685 -0.4891 1.1030 20 1 2.7306 0.8676 -1.9616 21 1 6.4218 0.0068 -0.0067 22 1 7.0998 -1.5211 1.2473 23 1 7.0977 0.1062 1.9686 24 1 10.1873 -2.0962 4.7467 25 1 2.7322 -0.8732 1.9581 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307436671.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:05 Heat of formation + Delta-G solvation = -10.830372 kcal Electronic energy + Delta-G solvation = -13378.412108 eV Core-core repulsion = 10768.668481 eV Total energy + Delta-G solvation = -2609.743628 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.030 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.26238 -39.01112 -37.84419 -36.99831 -34.97181 -32.33725 -31.70200 -30.00963 -25.77072 -23.98031 -23.53100 -20.41020 -19.14669 -17.79336 -17.41987 -17.02480 -16.71221 -16.27977 -15.83732 -15.17143 -14.79087 -14.47283 -14.24276 -14.09005 -13.87940 -13.23344 -13.20067 -12.94226 -12.61871 -12.50861 -12.05622 -11.87509 -11.67972 -11.47386 -10.87553 -10.02442 -9.33152 -8.40125 -6.51316 -0.48006 0.11598 0.93459 1.36685 1.38726 1.47702 1.49660 1.74836 2.27620 2.32186 2.66138 2.82651 2.92935 3.82775 3.92000 3.92827 4.05466 4.40363 4.43980 4.80502 4.91783 5.00673 5.04714 5.26238 5.34790 5.93095 6.30272 6.52741 6.65030 7.12389 8.76137 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.026079 B = 0.006785 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.415943 B = 4125.749692 C = 5184.021562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.286 3.714 3 C 0.027 3.973 4 C -0.093 4.093 5 C 0.004 3.996 6 Cl -0.048 7.048 7 C -0.180 4.180 8 C 0.134 3.866 9 O -0.319 6.319 10 C 0.176 3.824 11 C -0.554 4.554 12 H 0.038 0.962 13 C 0.020 3.980 14 N -0.936 5.936 15 Si 0.945 3.055 16 H -0.257 1.257 17 H -0.276 1.276 18 H -0.235 1.235 19 C -0.103 4.103 20 H 0.170 0.830 21 H 0.144 0.856 22 H 0.036 0.964 23 H 0.034 0.966 24 H 0.275 0.725 25 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.851 6.765 -15.343 18.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.029 4.029 3 C 0.023 3.977 4 C -0.114 4.114 5 C -0.023 4.023 6 Cl -0.019 7.019 7 C -0.200 4.200 8 C 0.087 3.913 9 O -0.233 6.233 10 C 0.102 3.898 11 C -0.592 4.592 12 H 0.056 0.944 13 C -0.179 4.179 14 N -0.575 5.575 15 Si 0.766 3.234 16 H -0.182 1.182 17 H -0.201 1.201 18 H -0.158 1.158 19 C -0.124 4.124 20 H 0.188 0.812 21 H 0.161 0.839 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.084 0.916 25 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.437 6.687 -15.174 18.605 hybrid contribution 1.428 -0.006 0.055 1.429 sum -7.009 6.681 -15.119 17.954 Atomic orbital electron populations 1.81289 1.12631 1.09374 1.08404 1.25272 0.91982 0.92812 0.92812 1.15228 0.83800 1.03426 0.95223 1.21026 0.91383 1.00318 0.98669 1.20339 0.92081 1.00261 0.89624 1.98391 1.76382 1.85844 1.41299 1.21519 1.01955 1.03287 0.93216 1.18960 0.91944 0.93454 0.86938 1.86156 1.22579 1.77293 1.37224 1.20806 0.74428 0.97155 0.97372 1.21009 0.92639 1.43507 1.01995 0.94406 1.25750 0.99201 0.94264 0.98674 1.70005 1.13621 1.45810 1.28033 0.85754 0.78303 0.79480 0.79874 1.18163 1.20092 1.15755 1.20541 0.90684 1.01743 0.99433 0.81217 0.83853 0.94654 0.94800 0.91567 0.83020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -11.58 18.54 19.00 0.35 -11.23 15 2 C 0.29 6.37 15.33 88.33 1.35 7.73 15 3 C 0.03 0.56 5.73 -21.38 -0.12 0.44 15 4 C -0.09 -1.70 9.53 22.57 0.22 -1.49 15 5 C 0.00 0.08 6.31 22.27 0.14 0.23 15 6 Cl -0.05 -0.94 28.95 -2.72 -0.08 -1.02 15 7 C -0.18 -4.86 8.81 22.44 0.20 -4.67 15 8 C 0.13 4.16 6.68 22.46 0.15 4.31 15 9 O -0.32 -13.10 10.12 -92.54 -0.94 -14.04 15 10 C 0.18 7.77 3.56 71.23 0.25 8.02 15 11 C -0.55 -30.98 9.99 25.60 0.26 -30.73 15 12 H 0.04 2.40 8.06 -2.91 -0.02 2.38 15 13 C 0.02 1.12 5.47 84.65 0.46 1.59 15 14 N -0.94 -55.83 13.96 21.45 0.30 -55.53 15 15 Si 0.95 39.33 27.47 68.60 1.88 41.21 15 16 H -0.26 -10.16 7.11 99.48 0.71 -9.45 15 17 H -0.28 -11.31 7.11 99.48 0.71 -10.60 15 18 H -0.23 -8.60 6.54 99.48 0.65 -7.95 15 19 C -0.10 -2.59 9.69 22.64 0.22 -2.37 15 20 H 0.17 2.17 8.06 -2.91 -0.02 2.14 15 21 H 0.14 3.98 6.28 -2.91 -0.02 3.97 15 22 H 0.04 1.47 6.71 -2.38 -0.02 1.45 15 23 H 0.03 1.39 7.08 -2.39 -0.02 1.37 15 24 H 0.28 15.07 8.31 -92.71 -0.77 14.30 15 25 H 0.15 3.60 8.06 -2.91 -0.02 3.58 15 Total: -1.00 -62.20 253.43 5.82 -56.38 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: 1.17 Total: 1.18 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 3.13 Total: -16.95 kcal Atomic # 7 Polarization: -67.42 SS G_CDS: 0.65 Total: -66.76 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.94 Total: -14.04 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 1.88 Total: 41.21 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -62.20 5.82 -56.38 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307436671.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.547 kcal (2) G-P(sol) polarization free energy of solvation -62.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds