Wall clock time and date at job start Sun Mar 29 2020 22:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99818 * 2 1 4 4 H 1.48507 * 109.46652 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47242 * 299.99850 * 3 2 1 6 6 H 1.48499 * 109.47269 * 60.00052 * 3 2 1 7 7 C 1.37881 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99334 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00314 * 359.97438 * 7 2 1 10 10 O 1.42105 * 106.40403 * 293.54303 * 9 7 2 11 11 O 1.42098 * 106.40145 * 66.46232 * 9 7 2 12 12 N 1.65606 * 107.21910 * 180.02562 * 9 7 2 13 13 C 1.46500 * 120.00055 * 64.99793 * 12 9 7 14 14 H 1.08997 * 110.01612 * 23.61314 * 13 12 9 15 15 C 1.53878 * 110.03014 * 145.00375 * 13 12 9 16 16 C 1.54265 * 106.59926 * 119.28416 * 15 13 12 17 17 C 1.54889 * 104.19524 * 23.60798 * 16 15 13 18 18 H 1.09009 * 110.75532 * 80.37201 * 17 16 15 19 19 F 1.39897 * 110.75716 * 203.74286 * 17 16 15 20 20 C 1.54264 * 110.03076 * 262.16997 * 13 12 9 21 21 H 0.96997 * 119.99726 * 0.02562 * 1 2 3 22 22 H 0.97002 * 119.99610 * 244.99753 * 12 9 7 23 23 H 1.08999 * 110.02571 * 238.57275 * 15 13 12 24 24 H 1.08999 * 110.03272 * 359.97438 * 15 13 12 25 25 H 1.08994 * 110.48421 * 142.28631 * 16 15 13 26 26 H 1.09001 * 110.48634 * 264.93148 * 16 15 13 27 27 H 1.08995 * 110.48715 * 335.78272 * 20 13 12 28 28 H 1.08997 * 110.48581 * 98.43093 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4519 -2.7956 1.2494 11 8 0.4510 -2.7950 -1.2500 12 7 2.2484 -3.9355 -0.0005 13 6 3.1395 -4.1089 1.1493 14 1 2.6871 -3.6744 2.0407 15 6 3.4214 -5.6044 1.3767 16 6 4.9449 -5.7937 1.2254 17 6 5.5332 -4.3923 1.5240 18 1 5.5901 -4.2181 2.5985 19 9 6.7910 -4.2456 0.9292 20 6 4.5014 -3.4415 0.8677 21 1 -0.4849 0.8400 -0.0004 22 1 2.3171 -4.5326 -0.7619 23 1 3.1066 -5.8954 2.3789 24 1 2.8949 -6.2012 0.6319 25 1 5.3122 -6.5232 1.9471 26 1 5.1920 -6.1026 0.2098 27 1 4.6769 -3.3706 -0.2057 28 1 4.5451 -2.4546 1.3283 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307519772.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:52 Heat of formation + Delta-G solvation = -160.254650 kcal Electronic energy + Delta-G solvation = -15510.814635 eV Core-core repulsion = 12601.699060 eV Total energy + Delta-G solvation = -2909.115575 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.44856 -37.90492 -35.18758 -33.95761 -33.13965 -32.45023 -28.52565 -26.39761 -26.09505 -20.86936 -20.32958 -19.06201 -17.63776 -16.54023 -16.36625 -15.77475 -14.95399 -14.66499 -14.36211 -14.06058 -13.91736 -13.34216 -13.12089 -12.28625 -12.02043 -11.77270 -11.41220 -11.23934 -11.19221 -10.72979 -10.61517 -10.53325 -10.44394 -10.29984 -10.20597 -10.16511 -9.25913 -9.02201 -8.54206 -6.70537 -5.32019 2.33679 3.05296 3.14089 3.21070 4.05565 4.38437 4.53573 4.62781 4.64558 4.89716 4.98592 5.34373 5.43510 5.54786 5.60744 5.75413 5.82597 5.89517 6.03451 6.16223 6.31750 6.41339 6.59819 6.88462 7.32363 7.88766 7.98742 8.89337 10.23736 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.028025 B = 0.009459 C = 0.007573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.861607 B = 2959.278972 C = 3696.396548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.919 3.081 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.019 5.019 8 H 0.104 0.896 9 S 2.712 3.288 10 O -1.008 7.008 11 O -1.008 7.008 12 N -1.129 6.129 13 C 0.157 3.843 14 H 0.100 0.900 15 C -0.129 4.129 16 C -0.146 4.146 17 C 0.081 3.919 18 H 0.093 0.907 19 F -0.215 7.215 20 C -0.168 4.168 21 H 0.290 0.710 22 H 0.402 0.598 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.308 -7.578 3.158 12.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.743 3.257 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.153 5.153 8 H 0.123 0.877 9 S 2.812 3.188 10 O -0.998 6.998 11 O -0.998 6.998 12 N -0.882 5.882 13 C 0.048 3.952 14 H 0.118 0.882 15 C -0.168 4.168 16 C -0.184 4.184 17 C 0.044 3.956 18 H 0.111 0.889 19 F -0.195 7.195 20 C -0.208 4.208 21 H 0.100 0.900 22 H 0.233 0.767 23 H 0.095 0.905 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.172 -7.516 3.311 11.586 hybrid contribution 1.115 1.023 -0.411 1.568 sum 9.287 -6.493 2.900 11.697 Atomic orbital electron populations 1.69911 1.06793 1.30598 1.40228 1.24748 0.94431 1.00821 0.88504 0.86153 0.80489 0.80510 0.78545 1.18586 1.19647 1.19645 1.30617 1.06188 1.11744 1.66709 0.87743 1.00480 0.72139 0.73355 0.72828 1.93358 1.72888 1.87561 1.45963 1.93374 1.73150 1.87655 1.45619 1.56135 1.54993 1.51014 1.26076 1.21080 0.89446 0.94851 0.89790 0.88165 1.22449 0.94810 0.96516 1.03022 1.22916 0.96188 0.96312 1.03007 1.22630 0.78681 0.96742 0.97532 0.88915 1.92777 1.43813 1.96795 1.86155 1.23579 0.94472 0.99654 1.03084 0.89970 0.76698 0.90548 0.90313 0.90749 0.90376 0.89326 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.68 13.19 55.43 0.73 -23.95 15 2 C 0.13 3.66 5.46 -17.81 -0.10 3.56 15 3 Si 0.92 20.40 29.54 -169.99 -5.02 15.38 15 4 H -0.26 -5.60 7.11 56.52 0.40 -5.20 15 5 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 7 C -1.02 -27.33 9.72 30.60 0.30 -27.03 15 8 H 0.10 2.55 7.18 -52.49 -0.38 2.17 15 9 S 2.71 70.19 5.00 -107.50 -0.54 69.65 15 10 O -1.01 -28.78 17.38 -57.17 -0.99 -29.77 15 11 O -1.01 -29.24 18.02 -57.17 -1.03 -30.27 15 12 N -1.13 -21.34 5.40 -3.94 -0.02 -21.37 15 13 C 0.16 2.51 3.57 -66.81 -0.24 2.28 15 14 H 0.10 1.71 7.54 -51.93 -0.39 1.32 15 15 C -0.13 -1.56 6.57 -25.61 -0.17 -1.73 15 16 C -0.15 -1.58 6.63 -25.07 -0.17 -1.74 15 17 C 0.08 1.00 4.71 -24.74 -0.12 0.88 15 18 H 0.09 0.97 8.14 -51.92 -0.42 0.54 15 19 F -0.21 -3.06 17.22 2.25 0.04 -3.03 15 20 C -0.17 -2.52 5.90 -25.07 -0.15 -2.66 15 21 H 0.29 7.59 8.31 -40.82 -0.34 7.26 15 22 H 0.40 6.55 8.67 -34.47 -0.30 6.25 15 23 H 0.08 0.82 8.14 -51.93 -0.42 0.40 15 24 H 0.08 0.92 7.75 -51.93 -0.40 0.51 15 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 26 H 0.08 0.84 8.14 -51.93 -0.42 0.42 15 27 H 0.09 1.38 8.05 -51.93 -0.42 0.96 15 28 H 0.09 1.34 7.96 -51.93 -0.41 0.93 15 LS Contribution 257.65 15.07 3.88 3.88 Total: -1.00 -34.28 257.65 -6.71 -40.99 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -3.13 Total: 4.93 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: -0.64 Total: -26.44 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.71 Total: -45.32 kcal Atomic # 8 Polarization: -58.02 SS G_CDS: -2.02 Total: -60.05 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.04 Total: -3.03 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 70.19 SS G_CDS: -0.54 Total: 69.65 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -34.28 -6.71 -40.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307519772.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.260 kcal (2) G-P(sol) polarization free energy of solvation -34.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds