Wall clock time and date at job start Sun Mar 29 2020 22:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99818 * 2 1 4 4 H 1.48507 * 109.46652 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47242 * 299.99850 * 3 2 1 6 6 H 1.48499 * 109.47269 * 60.00052 * 3 2 1 7 7 C 1.37881 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99334 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00314 * 359.97438 * 7 2 1 10 10 O 1.42105 * 106.40403 * 293.54303 * 9 7 2 11 11 O 1.42098 * 106.40145 * 66.46232 * 9 7 2 12 12 N 1.65606 * 107.21910 * 180.02562 * 9 7 2 13 13 C 1.46500 * 120.00055 * 64.99793 * 12 9 7 14 14 H 1.08997 * 110.01612 * 23.61314 * 13 12 9 15 15 C 1.53878 * 110.03014 * 145.00375 * 13 12 9 16 16 C 1.54265 * 106.59926 * 119.28416 * 15 13 12 17 17 C 1.54889 * 104.19524 * 23.60798 * 16 15 13 18 18 H 1.09009 * 110.75532 * 80.37201 * 17 16 15 19 19 F 1.39897 * 110.75716 * 203.74286 * 17 16 15 20 20 C 1.54264 * 110.03076 * 262.16997 * 13 12 9 21 21 H 0.96997 * 119.99726 * 0.02562 * 1 2 3 22 22 H 0.97002 * 119.99610 * 244.99753 * 12 9 7 23 23 H 1.08999 * 110.02571 * 238.57275 * 15 13 12 24 24 H 1.08999 * 110.03272 * 359.97438 * 15 13 12 25 25 H 1.08994 * 110.48421 * 142.28631 * 16 15 13 26 26 H 1.09001 * 110.48634 * 264.93148 * 16 15 13 27 27 H 1.08995 * 110.48715 * 335.78272 * 20 13 12 28 28 H 1.08997 * 110.48581 * 98.43093 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4519 -2.7956 1.2494 11 8 0.4510 -2.7950 -1.2500 12 7 2.2484 -3.9355 -0.0005 13 6 3.1395 -4.1089 1.1493 14 1 2.6871 -3.6744 2.0407 15 6 3.4214 -5.6044 1.3767 16 6 4.9449 -5.7937 1.2254 17 6 5.5332 -4.3923 1.5240 18 1 5.5901 -4.2181 2.5985 19 9 6.7910 -4.2456 0.9292 20 6 4.5014 -3.4415 0.8677 21 1 -0.4849 0.8400 -0.0004 22 1 2.3171 -4.5326 -0.7619 23 1 3.1066 -5.8954 2.3789 24 1 2.8949 -6.2012 0.6319 25 1 5.3122 -6.5232 1.9471 26 1 5.1920 -6.1026 0.2098 27 1 4.6769 -3.3706 -0.2057 28 1 4.5451 -2.4546 1.3283 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307519772.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:52 Heat of formation + Delta-G solvation = -187.206442 kcal Electronic energy + Delta-G solvation = -15511.983352 eV Core-core repulsion = 12601.699060 eV Total energy + Delta-G solvation = -2910.284292 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.49736 -39.08898 -37.35736 -36.13351 -35.19564 -33.86776 -29.60987 -28.19694 -27.56933 -21.89799 -21.53131 -21.01814 -19.48280 -18.33975 -17.60891 -17.21550 -16.79105 -16.07936 -15.94465 -15.46808 -15.36041 -14.89738 -14.26172 -13.99370 -13.51093 -13.36580 -13.03948 -12.98804 -12.54001 -12.48777 -12.42679 -12.28950 -11.83480 -11.81595 -11.54213 -11.44134 -11.25911 -10.95355 -10.19066 -8.74811 -7.46395 0.37358 1.32928 1.34717 1.51559 2.20817 2.58937 2.95585 3.41916 3.54433 3.69264 3.81575 3.98386 4.28869 4.34426 4.46371 4.51461 4.58574 4.76120 4.87882 4.94946 5.08350 5.27210 5.30399 5.38722 5.50449 5.93090 6.41846 6.80344 8.21895 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.028025 B = 0.009459 C = 0.007573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.861607 B = 2959.278972 C = 3696.396548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.988 3.012 4 H -0.248 1.248 5 H -0.262 1.262 6 H -0.259 1.259 7 C -1.036 5.036 8 H 0.122 0.878 9 S 2.718 3.282 10 O -1.043 7.043 11 O -1.048 7.048 12 N -1.113 6.113 13 C 0.144 3.856 14 H 0.085 0.915 15 C -0.123 4.123 16 C -0.136 4.136 17 C 0.083 3.917 18 H 0.117 0.883 19 F -0.224 7.224 20 C -0.173 4.173 21 H 0.298 0.702 22 H 0.415 0.585 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.363 -7.950 3.744 14.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.806 3.194 4 H -0.171 1.171 5 H -0.186 1.186 6 H -0.183 1.183 7 C -1.169 5.169 8 H 0.140 0.860 9 S 2.819 3.181 10 O -1.033 7.033 11 O -1.038 7.038 12 N -0.872 5.872 13 C 0.036 3.964 14 H 0.103 0.897 15 C -0.162 4.162 16 C -0.174 4.174 17 C 0.046 3.954 18 H 0.135 0.865 19 F -0.205 7.205 20 C -0.213 4.213 21 H 0.108 0.892 22 H 0.250 0.750 23 H 0.113 0.887 24 H 0.104 0.896 25 H 0.122 0.878 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.227 -7.917 3.892 13.507 hybrid contribution 0.492 1.063 -0.584 1.309 sum 10.719 -6.853 3.308 13.146 Atomic orbital electron populations 1.70002 1.08755 1.32182 1.41696 1.25982 0.95309 1.05305 0.87627 0.85131 0.79558 0.75393 0.79288 1.17051 1.18645 1.18339 1.30963 1.07242 1.12415 1.66305 0.85963 0.99912 0.72653 0.74094 0.71439 1.93305 1.74563 1.88293 1.47112 1.93309 1.75045 1.88463 1.47004 1.55508 1.54385 1.49527 1.27757 1.21401 0.89032 0.98085 0.87846 0.89665 1.22439 0.96166 0.93206 1.04387 1.22893 0.94605 0.95822 1.04091 1.22745 0.77401 0.96854 0.98367 0.86519 1.92760 1.44406 1.96874 1.86492 1.23551 0.94907 1.00015 1.02811 0.89196 0.75007 0.88655 0.89621 0.87829 0.90227 0.90184 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.18 13.19 21.45 0.28 -52.90 15 2 C 0.07 3.89 5.46 84.65 0.46 4.35 15 3 Si 0.99 41.07 29.54 68.60 2.03 43.10 15 4 H -0.25 -9.59 7.11 99.48 0.71 -8.89 15 5 H -0.26 -10.41 7.11 99.48 0.71 -9.71 15 6 H -0.26 -10.17 7.11 99.48 0.71 -9.47 15 7 C -1.04 -55.81 9.72 67.74 0.66 -55.15 15 8 H 0.12 5.91 7.18 -2.91 -0.02 5.89 15 9 S 2.72 143.38 5.00 -56.49 -0.28 143.10 15 10 O -1.04 -61.11 17.38 -128.00 -2.22 -63.33 15 11 O -1.05 -62.45 18.02 -128.00 -2.31 -64.76 15 12 N -1.11 -41.77 5.40 -166.37 -0.90 -42.67 15 13 C 0.14 4.44 3.57 45.72 0.16 4.60 15 14 H 0.09 2.89 7.54 -2.39 -0.02 2.87 15 15 C -0.12 -2.63 6.57 31.32 0.21 -2.43 15 16 C -0.14 -2.44 6.63 31.67 0.21 -2.23 15 17 C 0.08 1.82 4.71 31.89 0.15 1.97 15 18 H 0.12 2.03 8.14 -2.38 -0.02 2.01 15 19 F -0.22 -5.85 17.22 44.97 0.77 -5.08 15 20 C -0.17 -4.94 5.90 31.67 0.19 -4.75 15 21 H 0.30 15.89 8.31 -92.71 -0.77 15.12 15 22 H 0.42 13.28 8.67 -96.74 -0.84 12.44 15 23 H 0.09 1.73 8.14 -2.39 -0.02 1.71 15 24 H 0.09 1.75 7.75 -2.39 -0.02 1.73 15 25 H 0.10 1.34 8.14 -2.39 -0.02 1.32 15 26 H 0.08 1.44 8.14 -2.39 -0.02 1.42 15 27 H 0.08 2.40 8.05 -2.39 -0.02 2.39 15 28 H 0.08 2.33 7.96 -2.39 -0.02 2.31 15 Total: -1.00 -74.80 257.65 -0.25 -75.05 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.34 Total: 21.13 kcal Atomic # 6 Polarization: -55.69 SS G_CDS: 2.04 Total: -53.65 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -0.62 Total: -95.57 kcal Atomic # 8 Polarization: -123.56 SS G_CDS: -4.53 Total: -128.09 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.77 Total: -5.08 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 16 Polarization: 143.38 SS G_CDS: -0.28 Total: 143.10 kcal Total: -74.80 -0.25 -75.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307519772.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.152 kcal (2) G-P(sol) polarization free energy of solvation -74.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds