Wall clock time and date at job start Sun Mar 29 2020 22:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99788 * 2 1 4 4 C 1.50702 * 109.46939 * 293.95226 * 3 2 1 5 5 H 1.07998 * 119.99887 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99667 * 179.97438 * 4 3 2 7 7 N 1.31520 * 120.00476 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99670 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47240 * 0.02562 * 8 6 4 10 10 H 1.48509 * 109.46692 * 120.00506 * 8 6 4 11 11 H 1.48500 * 109.47483 * 240.00137 * 8 6 4 12 12 C 1.46901 * 110.99975 * 123.94949 * 2 1 3 13 13 C 1.53000 * 109.46769 * 66.05138 * 12 2 1 14 14 H 1.08995 * 115.55630 * 29.32522 * 13 12 2 15 15 C 1.53003 * 117.49371 * 243.61836 * 13 12 2 16 16 C 1.53001 * 117.49608 * 174.99911 * 13 12 2 17 17 Cl 1.80304 * 117.49873 * 214.97657 * 16 13 12 18 18 Cl 1.80297 * 117.49938 * 359.97410 * 16 13 12 19 19 H 1.09001 * 109.47121 * 296.04690 * 1 2 3 20 20 H 1.09005 * 109.47342 * 56.04784 * 1 2 3 21 21 H 1.08999 * 109.46894 * 176.04703 * 1 2 3 22 22 H 1.09003 * 109.47188 * 53.95311 * 3 2 1 23 23 H 1.08993 * 109.47221 * 173.95234 * 3 2 1 24 24 H 0.96995 * 119.99798 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.47401 * 306.04845 * 12 2 1 26 26 H 1.09001 * 109.46874 * 186.04858 * 12 2 1 27 27 H 1.08998 * 117.50656 * 0.02562 * 15 13 12 28 28 H 1.09001 * 117.49674 * 145.02590 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0739 1.5114 -2.0485 6 6 2.0267 3.3495 -1.5285 7 7 2.7118 4.0020 -0.6150 8 14 1.5829 4.1867 -3.1383 9 1 0.8157 3.2441 -3.9915 10 1 0.7549 5.3877 -2.8598 11 1 2.8247 4.5944 -3.8432 12 6 1.9954 -0.7659 1.1377 13 6 1.6315 -2.2425 0.9704 14 1 1.5326 -2.5888 -0.0584 15 6 0.7060 -2.8650 2.0178 16 6 2.1920 -3.2289 1.9970 17 17 2.6379 -4.8753 1.4125 18 17 3.2313 -2.5622 3.3108 19 1 -0.3633 0.4513 0.9233 20 1 -0.3634 0.5740 -0.8525 21 1 -0.3633 -1.0252 -0.0708 22 1 1.5610 1.9274 0.8309 23 1 3.0796 1.3445 0.1083 24 1 2.9863 4.9181 -0.7770 25 1 1.5611 -0.3871 2.0629 26 1 3.0797 -0.6609 1.1757 27 1 0.3561 -2.2225 2.8257 28 1 -0.0020 -3.6209 1.6781 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307947812.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:24 Heat of formation + Delta-G solvation = -4.991864 kcal Electronic energy + Delta-G solvation = -12754.251604 eV Core-core repulsion = 10278.161398 eV Total energy + Delta-G solvation = -2476.090206 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 237.038 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.62757 -37.73309 -37.00744 -36.15825 -34.50047 -29.65748 -28.42438 -25.90141 -23.29488 -22.59125 -21.38616 -18.52419 -17.52763 -16.86400 -16.24052 -15.90749 -15.46812 -14.80727 -14.00166 -13.92715 -13.88118 -13.45527 -13.05495 -12.80984 -12.78116 -12.56786 -12.34096 -12.28707 -12.13762 -11.91126 -11.88650 -11.30959 -11.17030 -10.70069 -10.61358 -9.04823 -8.19655 -6.29600 0.18141 1.19820 1.42430 1.43454 1.56777 2.22486 2.41818 3.00871 3.13598 3.34227 3.63897 4.01892 4.28013 4.55478 4.58667 4.66134 4.73075 4.82622 5.05659 5.13167 5.20501 5.32290 5.66290 6.05234 6.31262 6.61084 6.87055 7.40284 8.91789 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.044946 B = 0.005256 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.820453 B = 5325.982015 C = 5547.390973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.545 5.545 3 C 0.206 3.794 4 C -0.521 4.521 5 H 0.066 0.934 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.970 3.030 9 H -0.261 1.261 10 H -0.279 1.279 11 H -0.280 1.280 12 C 0.086 3.914 13 C -0.106 4.106 14 H 0.137 0.863 15 C -0.120 4.120 16 C -0.003 4.003 17 Cl -0.099 7.099 18 Cl -0.108 7.108 19 H 0.012 0.988 20 H 0.056 0.944 21 H 0.086 0.914 22 H -0.036 1.036 23 H 0.001 0.999 24 H 0.264 0.736 25 H 0.035 0.965 26 H 0.063 0.937 27 H 0.126 0.874 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.379 -15.321 5.471 16.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.269 5.269 3 C 0.080 3.920 4 C -0.560 4.560 5 H 0.085 0.915 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.185 1.185 10 H -0.205 1.205 11 H -0.206 1.206 12 C -0.042 4.042 13 C -0.125 4.125 14 H 0.155 0.845 15 C -0.157 4.157 16 C -0.055 4.055 17 Cl -0.072 7.072 18 Cl -0.081 7.081 19 H 0.031 0.969 20 H 0.075 0.925 21 H 0.104 0.896 22 H -0.018 1.018 23 H 0.020 0.980 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.144 0.856 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.019 -15.470 5.137 16.789 hybrid contribution 0.193 1.107 0.305 1.165 sum -3.826 -14.363 5.442 15.829 Atomic orbital electron populations 1.22260 0.87021 1.01736 0.99830 1.61990 1.08680 1.15172 1.41081 1.19390 0.93634 0.83765 0.95189 1.21510 1.34726 0.97406 1.02334 0.91543 1.25929 0.95050 0.98144 1.00676 1.70098 1.39460 1.11885 1.36207 0.85325 0.78009 0.78220 0.79001 1.18506 1.20477 1.20610 1.21617 0.99762 0.90755 0.92102 1.23157 0.99543 0.92389 0.97435 0.84479 1.24261 0.88442 1.02413 1.00608 1.26953 0.95879 0.86642 0.95998 1.98737 1.94207 1.25756 1.88503 1.98746 1.71628 1.85350 1.52403 0.96944 0.92518 0.89592 1.01811 0.98042 0.92731 0.94687 0.91843 0.85557 0.83646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.40 9.19 127.69 1.17 2.58 15 2 N -0.55 -22.55 4.75 -927.03 -4.41 -26.95 15 3 C 0.21 10.91 4.72 85.56 0.40 11.31 15 4 C -0.52 -29.22 8.46 25.60 0.22 -29.00 15 5 H 0.07 3.62 7.12 -2.91 -0.02 3.60 15 6 C 0.00 -0.01 5.46 84.65 0.46 0.45 15 7 N -0.94 -56.30 13.29 21.45 0.28 -56.01 15 8 Si 0.97 43.92 29.54 68.60 2.03 45.95 15 9 H -0.26 -11.27 7.11 99.48 0.71 -10.56 15 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 15 12 C 0.09 2.91 4.33 86.30 0.37 3.28 15 13 C -0.11 -2.65 4.64 -10.79 -0.05 -2.70 15 14 H 0.14 3.45 8.14 -2.39 -0.02 3.43 15 15 C -0.12 -2.19 9.86 30.60 0.30 -1.89 15 16 C 0.00 -0.07 3.62 30.60 0.11 0.04 15 17 Cl -0.10 -2.18 29.29 -2.72 -0.08 -2.26 15 18 Cl -0.11 -2.76 28.23 -2.72 -0.08 -2.84 15 19 H 0.01 0.43 8.14 -2.39 -0.02 0.41 15 20 H 0.06 2.21 6.76 -2.38 -0.02 2.20 15 21 H 0.09 2.35 7.28 -2.39 -0.02 2.33 15 22 H -0.04 -2.05 8.12 -2.39 -0.02 -2.07 15 23 H 0.00 0.08 7.93 -2.39 -0.02 0.06 15 24 H 0.26 14.89 8.31 -92.71 -0.77 14.12 15 25 H 0.04 1.17 7.85 -2.39 -0.02 1.15 15 26 H 0.06 2.35 7.81 -2.39 -0.02 2.33 15 27 H 0.13 2.16 8.03 -2.39 -0.02 2.14 15 28 H 0.15 1.91 8.14 -2.39 -0.02 1.89 15 Total: -1.00 -62.25 270.34 1.88 -60.37 By element: Atomic # 1 Polarization: -3.46 SS G_CDS: 1.14 Total: -2.32 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 2.99 Total: -15.93 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -4.12 Total: -82.97 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 17 Polarization: -4.94 SS G_CDS: -0.16 Total: -5.10 kcal Total: -62.25 1.88 -60.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307947812.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.376 kcal (2) G-P(sol) polarization free energy of solvation -62.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds