Wall clock time and date at job start Sun Mar 29 2020 21:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28723 * 125.86880 * 2 1 4 4 N 1.28634 * 110.17470 * 179.82054 * 3 2 1 5 5 C 1.33764 * 108.89019 * 0.44866 * 4 3 2 6 6 C 1.35318 * 125.87048 * 180.31186 * 2 1 3 7 7 C 1.50699 * 126.90820 * 0.02562 * 6 2 1 8 8 N 1.46898 * 109.47075 * 275.00247 * 7 6 2 9 9 C 1.46908 * 110.99887 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.46973 * 185.34913 * 9 8 7 11 11 C 1.50699 * 115.54866 * 65.05175 * 10 9 8 12 12 H 1.07995 * 120.00235 * 265.43899 * 11 10 9 13 13 C 1.37881 * 120.00035 * 85.44611 * 11 10 9 14 14 N 1.31521 * 119.99754 * 353.59146 * 13 11 10 15 15 Si 1.86799 * 120.00290 * 173.59344 * 13 11 10 16 16 H 1.48505 * 109.46751 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47061 * 119.99513 * 15 13 11 18 18 H 1.48486 * 109.47454 * 239.99819 * 15 13 11 19 19 C 1.53002 * 117.50123 * 279.37706 * 10 9 8 20 20 C 1.53005 * 117.49545 * 210.71836 * 10 9 8 21 21 H 1.09004 * 109.47107 * 269.69417 * 1 2 3 22 22 H 1.09003 * 109.46947 * 29.68851 * 1 2 3 23 23 H 1.09000 * 109.47277 * 149.69033 * 1 2 3 24 24 H 1.08001 * 126.75604 * 179.71424 * 5 4 3 25 25 H 1.09000 * 109.47088 * 35.00665 * 7 6 2 26 26 H 1.09005 * 109.46940 * 155.00078 * 7 6 2 27 27 H 1.00897 * 111.00490 * 303.95151 * 8 7 6 28 28 H 1.09002 * 109.47166 * 305.35254 * 9 8 7 29 29 H 1.08997 * 109.46759 * 65.34757 * 9 8 7 30 30 H 0.97003 * 119.99606 * 180.02562 * 14 13 11 31 31 H 1.08994 * 117.49520 * 0.02562 * 19 10 9 32 32 H 1.09003 * 117.49721 * 145.02235 * 19 10 9 33 33 H 1.09001 * 117.49700 * 214.98151 * 20 10 9 34 34 H 1.08997 * 117.50020 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2192 1.0431 0.0000 4 7 3.4576 0.6952 0.0038 5 6 3.5322 -0.6404 -0.0035 6 6 2.2579 -1.0965 -0.0060 7 6 1.8117 -2.5359 -0.0143 8 7 1.5509 -2.9757 1.3628 9 6 1.1134 -4.3778 1.3937 10 6 0.7246 -4.7593 2.8234 11 6 -0.4702 -4.0345 3.3874 12 1 -0.3303 -3.1451 3.9838 13 6 -1.7421 -4.5069 3.1421 14 7 -1.9215 -5.5134 2.3147 15 14 -3.2105 -3.7175 3.9848 16 1 -2.7436 -2.6123 4.8600 17 1 -4.1386 -3.1776 2.9590 18 1 -3.9164 -4.7344 4.8048 19 6 1.8542 -5.1187 3.7907 20 6 0.9333 -6.2144 3.2478 21 1 -0.3633 -0.0055 1.0277 22 1 -0.3633 0.8928 -0.5090 23 1 -0.3634 -0.8872 -0.5186 24 1 4.4322 -1.2374 -0.0070 25 1 0.9003 -2.6304 -0.6048 26 1 2.5940 -3.1562 -0.4519 27 1 2.3623 -2.8376 1.9464 28 1 0.2527 -4.5045 0.7370 29 1 1.9265 -5.0196 1.0547 30 1 -2.8164 -5.8455 2.1418 31 1 2.8743 -5.0830 3.4086 32 1 1.7330 -4.8312 4.8352 33 1 0.2067 -6.6473 3.9354 34 1 1.3472 -6.8999 2.5084 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308924006.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:28 Heat of formation + Delta-G solvation = 124.569262 kcal Electronic energy + Delta-G solvation = -16601.725380 eV Core-core repulsion = 13958.821559 eV Total energy + Delta-G solvation = -2642.903821 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.05231 -37.20203 -35.04272 -34.21930 -31.91895 -30.99369 -27.82048 -26.59607 -25.35276 -23.31649 -22.31627 -21.12241 -20.53134 -19.07572 -17.17000 -16.43627 -16.17902 -15.15246 -14.56777 -14.38720 -14.14359 -13.89021 -13.46458 -13.10546 -12.87305 -12.81283 -11.97441 -11.75661 -11.37385 -11.33466 -11.01440 -10.74872 -10.65753 -10.49984 -10.23059 -9.89317 -9.56474 -9.05663 -8.85489 -8.45073 -8.12568 -7.76336 -6.03327 -4.04850 1.75268 2.58073 2.72417 3.25902 3.35300 3.39882 4.40304 4.49482 4.65496 4.82531 5.12182 5.13547 5.20600 5.26995 5.40166 5.52754 5.63437 5.73441 6.00209 6.11741 6.23998 6.30795 6.41161 6.52097 6.68377 6.73569 6.77357 7.07062 7.41820 7.45475 7.75289 7.90022 7.95382 8.48225 8.67662 8.95111 9.58601 11.06451 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.024532 B = 0.007235 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.071135 B = 3869.259848 C = 4606.054927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.276 5.276 3 N -0.097 5.097 4 N -0.278 5.278 5 C -0.057 4.057 6 C 0.003 3.997 7 C 0.127 3.873 8 N -0.666 5.666 9 C 0.108 3.892 10 C 0.050 3.950 11 C -0.469 4.469 12 H 0.059 0.941 13 C 0.067 3.933 14 N -0.885 5.885 15 Si 0.886 3.114 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.286 1.286 19 C -0.215 4.215 20 C -0.157 4.157 21 H 0.099 0.901 22 H 0.094 0.906 23 H 0.100 0.900 24 H 0.185 0.815 25 H 0.083 0.917 26 H 0.051 0.949 27 H 0.336 0.664 28 H 0.078 0.922 29 H -0.001 1.001 30 H 0.257 0.743 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.735 4.233 -5.621 8.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.069 5.069 3 N -0.077 5.077 4 N -0.143 5.143 5 C -0.215 4.215 6 C -0.131 4.131 7 C -0.004 4.004 8 N -0.297 5.297 9 C -0.020 4.020 10 C 0.050 3.950 11 C -0.507 4.507 12 H 0.077 0.923 13 C -0.134 4.134 14 N -0.523 5.523 15 Si 0.714 3.286 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.212 1.212 19 C -0.253 4.253 20 C -0.195 4.195 21 H 0.118 0.882 22 H 0.113 0.887 23 H 0.119 0.881 24 H 0.202 0.798 25 H 0.101 0.899 26 H 0.069 0.931 27 H 0.153 0.847 28 H 0.096 0.904 29 H 0.017 0.983 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.938 5.938 -5.693 9.120 hybrid contribution -0.242 -1.404 0.282 1.453 sum 3.697 4.534 -5.411 7.969 Atomic orbital electron populations 1.22282 0.72407 1.05142 1.05940 1.47138 1.09528 1.04381 1.45889 1.78241 0.96591 1.12049 1.20821 1.75007 1.09835 1.12524 1.16898 1.23309 0.97100 0.92042 1.09067 1.22261 0.90893 0.92074 1.07850 1.20359 1.00387 0.86092 0.93540 1.60345 1.39421 1.23728 1.06216 1.21579 0.96973 0.84106 0.99388 1.18808 0.93346 0.93627 0.89260 1.20342 0.88761 1.10434 1.31173 0.92282 1.24937 0.98540 0.95040 0.94932 1.70015 1.21623 1.26135 1.34561 0.86635 0.82964 0.79367 0.79604 1.19809 1.21229 1.21179 1.23004 0.94275 1.08008 0.99992 1.22525 1.01321 0.92825 1.02851 0.88233 0.88719 0.88126 0.79812 0.89909 0.93084 0.84650 0.90355 0.98262 0.93328 0.92095 0.90508 0.90038 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 11.21 59.84 0.67 1.63 16 2 N -0.28 -4.08 3.74 -63.79 -0.24 -4.32 16 3 N -0.10 -1.63 13.17 60.35 0.79 -0.84 16 4 N -0.28 -4.70 12.41 30.23 0.38 -4.32 16 5 C -0.06 -0.82 11.99 -17.74 -0.21 -1.03 16 6 C 0.00 0.04 6.51 -82.08 -0.53 -0.49 16 7 C 0.13 1.79 5.90 -4.98 -0.03 1.76 16 8 N -0.67 -11.58 6.37 -115.05 -0.73 -12.31 16 9 C 0.11 2.16 5.51 -3.82 -0.02 2.14 16 10 C 0.05 1.15 1.55 -155.66 -0.24 0.91 16 11 C -0.47 -12.13 8.74 -34.44 -0.30 -12.43 16 12 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 13 C 0.07 1.76 5.39 -17.82 -0.10 1.66 16 14 N -0.89 -23.93 12.92 55.43 0.72 -23.21 16 15 Si 0.89 20.49 29.54 -169.99 -5.02 15.46 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 C -0.22 -4.46 9.96 -26.69 -0.27 -4.73 16 20 C -0.16 -3.52 9.41 -26.69 -0.25 -3.77 16 21 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 22 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.10 1.05 7.22 -51.93 -0.38 0.67 16 24 H 0.18 2.06 8.06 -52.49 -0.42 1.64 16 25 H 0.08 1.14 7.32 -51.93 -0.38 0.76 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.34 5.71 8.78 -39.29 -0.34 5.36 16 28 H 0.08 1.75 8.13 -51.93 -0.42 1.32 16 29 H 0.00 -0.01 8.09 -51.93 -0.42 -0.43 16 30 H 0.26 6.69 8.31 -40.82 -0.34 6.36 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 296.35 15.07 4.47 4.47 Total: -1.00 -29.38 296.35 -5.79 -35.17 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -4.87 Total: 4.25 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -1.28 Total: -14.35 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.91 Total: -45.00 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.38 -5.79 -35.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308924006.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.741 kcal (2) G-P(sol) polarization free energy of solvation -29.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds