Wall clock time and date at job start Sun Mar 29 2020 21:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28723 * 125.86880 * 2 1 4 4 N 1.28634 * 110.17470 * 179.82054 * 3 2 1 5 5 C 1.33764 * 108.89019 * 0.44866 * 4 3 2 6 6 C 1.35318 * 125.87048 * 180.31186 * 2 1 3 7 7 C 1.50699 * 126.90820 * 0.02562 * 6 2 1 8 8 N 1.46898 * 109.47075 * 275.00247 * 7 6 2 9 9 C 1.46908 * 110.99887 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.46973 * 185.34913 * 9 8 7 11 11 C 1.50699 * 115.54866 * 65.05175 * 10 9 8 12 12 H 1.07995 * 120.00235 * 265.43899 * 11 10 9 13 13 C 1.37881 * 120.00035 * 85.44611 * 11 10 9 14 14 N 1.31521 * 119.99754 * 353.59146 * 13 11 10 15 15 Si 1.86799 * 120.00290 * 173.59344 * 13 11 10 16 16 H 1.48505 * 109.46751 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47061 * 119.99513 * 15 13 11 18 18 H 1.48486 * 109.47454 * 239.99819 * 15 13 11 19 19 C 1.53002 * 117.50123 * 279.37706 * 10 9 8 20 20 C 1.53005 * 117.49545 * 210.71836 * 10 9 8 21 21 H 1.09004 * 109.47107 * 269.69417 * 1 2 3 22 22 H 1.09003 * 109.46947 * 29.68851 * 1 2 3 23 23 H 1.09000 * 109.47277 * 149.69033 * 1 2 3 24 24 H 1.08001 * 126.75604 * 179.71424 * 5 4 3 25 25 H 1.09000 * 109.47088 * 35.00665 * 7 6 2 26 26 H 1.09005 * 109.46940 * 155.00078 * 7 6 2 27 27 H 1.00897 * 111.00490 * 303.95151 * 8 7 6 28 28 H 1.09002 * 109.47166 * 305.35254 * 9 8 7 29 29 H 1.08997 * 109.46759 * 65.34757 * 9 8 7 30 30 H 0.97003 * 119.99606 * 180.02562 * 14 13 11 31 31 H 1.08994 * 117.49520 * 0.02562 * 19 10 9 32 32 H 1.09003 * 117.49721 * 145.02235 * 19 10 9 33 33 H 1.09001 * 117.49700 * 214.98151 * 20 10 9 34 34 H 1.08997 * 117.50020 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2192 1.0431 0.0000 4 7 3.4576 0.6952 0.0038 5 6 3.5322 -0.6404 -0.0035 6 6 2.2579 -1.0965 -0.0060 7 6 1.8117 -2.5359 -0.0143 8 7 1.5509 -2.9757 1.3628 9 6 1.1134 -4.3778 1.3937 10 6 0.7246 -4.7593 2.8234 11 6 -0.4702 -4.0345 3.3874 12 1 -0.3303 -3.1451 3.9838 13 6 -1.7421 -4.5069 3.1421 14 7 -1.9215 -5.5134 2.3147 15 14 -3.2105 -3.7175 3.9848 16 1 -2.7436 -2.6123 4.8600 17 1 -4.1386 -3.1776 2.9590 18 1 -3.9164 -4.7344 4.8048 19 6 1.8542 -5.1187 3.7907 20 6 0.9333 -6.2144 3.2478 21 1 -0.3633 -0.0055 1.0277 22 1 -0.3633 0.8928 -0.5090 23 1 -0.3634 -0.8872 -0.5186 24 1 4.4322 -1.2374 -0.0070 25 1 0.9003 -2.6304 -0.6048 26 1 2.5940 -3.1562 -0.4519 27 1 2.3623 -2.8376 1.9464 28 1 0.2527 -4.5045 0.7370 29 1 1.9265 -5.0196 1.0547 30 1 -2.8164 -5.8455 2.1418 31 1 2.8743 -5.0830 3.4086 32 1 1.7330 -4.8312 4.8352 33 1 0.2067 -6.6473 3.9354 34 1 1.3472 -6.8999 2.5084 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308924006.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:28 Heat of formation + Delta-G solvation = 104.805505 kcal Electronic energy + Delta-G solvation = -16602.582401 eV Core-core repulsion = 13958.821559 eV Total energy + Delta-G solvation = -2643.760842 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.19789 -38.83049 -36.40051 -35.36980 -33.88418 -32.24649 -28.87553 -28.05116 -27.15374 -24.72846 -23.45847 -22.82323 -21.70182 -20.84778 -18.40979 -17.84022 -17.55602 -16.74760 -16.32452 -15.64754 -15.41624 -15.31839 -14.91189 -14.49326 -14.11500 -13.76778 -13.51869 -13.18302 -13.00985 -12.87723 -12.63432 -12.52788 -12.30878 -11.98693 -11.83529 -11.33844 -11.01330 -10.71440 -10.37221 -10.22179 -9.86894 -9.10677 -8.02457 -6.07789 0.60401 1.40926 1.46247 1.54293 1.54941 1.58408 2.48521 3.26648 3.28965 3.50295 3.68410 3.79382 4.02298 4.13671 4.29059 4.41165 4.54951 4.59506 4.62896 4.70665 4.78073 4.83151 4.98320 5.03641 5.09558 5.24712 5.32628 5.64578 5.67837 5.77203 5.90791 6.29640 6.49821 6.67678 6.95504 7.51060 7.57470 9.06413 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.024532 B = 0.007235 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.071135 B = 3869.259848 C = 4606.054927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.275 5.275 3 N -0.121 5.121 4 N -0.306 5.306 5 C -0.053 4.053 6 C -0.001 4.001 7 C 0.135 3.865 8 N -0.677 5.677 9 C 0.125 3.875 10 C 0.026 3.974 11 C -0.478 4.478 12 H 0.043 0.957 13 C 0.027 3.973 14 N -0.909 5.909 15 Si 0.938 3.062 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.288 1.288 19 C -0.192 4.192 20 C -0.166 4.166 21 H 0.092 0.908 22 H 0.117 0.883 23 H 0.111 0.889 24 H 0.215 0.785 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.340 0.660 28 H 0.051 0.949 29 H 0.018 0.982 30 H 0.256 0.744 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.485 4.307 -6.097 9.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.069 5.069 3 N -0.100 5.100 4 N -0.170 5.170 5 C -0.212 4.212 6 C -0.135 4.135 7 C 0.005 3.995 8 N -0.309 5.309 9 C -0.004 4.004 10 C 0.025 3.975 11 C -0.516 4.516 12 H 0.061 0.939 13 C -0.172 4.172 14 N -0.548 5.548 15 Si 0.765 3.235 16 H -0.199 1.199 17 H -0.207 1.207 18 H -0.214 1.214 19 C -0.229 4.229 20 C -0.204 4.204 21 H 0.110 0.890 22 H 0.136 0.864 23 H 0.129 0.871 24 H 0.231 0.769 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.158 0.842 28 H 0.070 0.930 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.688 6.037 -6.168 9.822 hybrid contribution -0.462 -1.431 0.456 1.571 sum 4.226 4.607 -5.712 8.468 Atomic orbital electron populations 1.22516 0.70969 1.06908 1.05951 1.47419 1.10468 1.04182 1.44854 1.78196 0.96937 1.12894 1.22018 1.74978 1.10141 1.13949 1.17980 1.23860 0.98265 0.91425 1.07663 1.22391 0.91003 0.92120 1.08034 1.20349 1.01435 0.85984 0.91781 1.60185 1.40118 1.22189 1.08389 1.21195 0.96586 0.85897 0.96721 1.18957 0.93643 0.93565 0.91349 1.20524 0.90236 1.10026 1.30801 0.93852 1.25475 1.00552 0.95624 0.95541 1.70095 1.21884 1.27201 1.35613 0.85829 0.80529 0.78419 0.78725 1.19922 1.20667 1.21412 1.22988 0.95126 1.05542 0.99253 1.22445 1.01733 0.93120 1.03084 0.88973 0.86437 0.87052 0.76865 0.89697 0.90514 0.84216 0.93005 0.96428 0.93482 0.89019 0.91177 0.92768 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.66 11.21 127.77 1.43 3.09 16 2 N -0.28 -7.75 3.74 -355.73 -1.33 -9.08 16 3 N -0.12 -3.95 13.17 37.02 0.49 -3.46 16 4 N -0.31 -9.98 12.41 -58.26 -0.72 -10.71 16 5 C -0.05 -1.41 11.99 83.73 1.00 -0.41 16 6 C 0.00 -0.04 6.51 41.35 0.27 0.23 16 7 C 0.14 3.44 5.90 85.56 0.50 3.94 16 8 N -0.68 -22.10 6.37 -517.92 -3.30 -25.40 16 9 C 0.12 4.79 5.51 86.30 0.48 5.26 16 10 C 0.03 1.14 1.55 -52.93 -0.08 1.06 16 11 C -0.48 -24.62 8.74 25.60 0.22 -24.40 16 12 H 0.04 2.32 7.82 -2.91 -0.02 2.30 16 13 C 0.03 1.43 5.39 84.65 0.46 1.88 16 14 N -0.91 -49.22 12.92 21.45 0.28 -48.95 16 15 Si 0.94 42.09 29.54 68.60 2.03 44.12 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 19 C -0.19 -7.56 9.96 30.62 0.30 -7.25 16 20 C -0.17 -7.28 9.41 30.62 0.29 -6.99 16 21 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 22 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.11 2.15 7.22 -2.39 -0.02 2.13 16 24 H 0.21 4.08 8.06 -2.91 -0.02 4.05 16 25 H 0.08 2.14 7.32 -2.39 -0.02 2.13 16 26 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.34 10.66 8.78 -89.70 -0.79 9.87 16 28 H 0.05 2.26 8.13 -2.39 -0.02 2.24 16 29 H 0.02 0.61 8.09 -2.39 -0.02 0.59 16 30 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 31 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.05 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -61.94 296.35 2.62 -59.32 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.31 Total: 17.74 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 4.88 Total: -23.58 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -4.59 Total: -97.59 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -61.94 2.62 -59.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308924006.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.121 kcal (2) G-P(sol) polarization free energy of solvation -61.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds