Wall clock time and date at job start Sun Mar 29 2020 21:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46493 * 120.00145 * 2 1 4 4 C 1.38532 * 119.99603 * 179.97438 * 2 1 3 5 5 C 1.39679 * 120.48720 * 4.99990 * 4 2 1 6 6 C 1.38093 * 118.49077 * 179.70011 * 5 4 2 7 7 N 1.32513 * 119.28969 * 0.27694 * 6 5 4 8 8 C 1.32475 * 120.93520 * 0.02562 * 7 6 5 9 9 N 1.38397 * 119.17944 * 179.97438 * 8 7 6 10 10 C 1.46503 * 119.99678 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.46707 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47200 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99436 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00405 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99622 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00211 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47012 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47276 * 119.99890 * 16 14 12 19 19 H 1.48503 * 109.46890 * 240.00153 * 16 14 12 20 20 N 1.32464 * 121.64270 * 359.97438 * 8 7 6 21 21 H 1.08998 * 109.47025 * 270.00446 * 1 2 3 22 22 H 1.08999 * 109.46971 * 30.00203 * 1 2 3 23 23 H 1.08990 * 109.47115 * 150.00453 * 1 2 3 24 24 H 1.09008 * 109.47079 * 270.00056 * 3 2 1 25 25 H 1.09000 * 109.47588 * 29.99887 * 3 2 1 26 26 H 1.08999 * 109.47683 * 150.00032 * 3 2 1 27 27 H 1.08002 * 120.75848 * 359.97438 * 5 4 2 28 28 H 1.07998 * 120.35376 * 180.25515 * 6 5 4 29 29 H 0.97001 * 119.99796 * 179.97438 * 9 8 7 30 30 H 1.08994 * 109.47481 * 299.99557 * 10 9 8 31 31 H 1.09000 * 109.47462 * 59.99999 * 10 9 8 32 32 H 1.08996 * 109.47691 * 300.00133 * 11 10 9 33 33 H 1.09002 * 109.47264 * 60.00150 * 11 10 9 34 34 H 0.97005 * 119.99855 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1576 -1.1998 0.0005 5 6 1.4734 -2.4130 -0.1038 6 6 2.2053 -3.5840 -0.1054 7 7 3.5251 -3.5237 -0.0031 8 6 4.1476 -2.3590 0.1007 9 7 5.5274 -2.3384 0.2062 10 6 6.2812 -3.5946 0.2015 11 6 7.7758 -3.2929 0.3288 12 6 8.5512 -4.5851 0.3246 13 1 8.0301 -5.5273 0.2392 14 6 9.9258 -4.5647 0.4298 15 7 10.5602 -3.4174 0.5342 16 14 10.8870 -6.1664 0.4239 17 1 9.9458 -7.3080 0.2971 18 1 11.8311 -6.1729 -0.7223 19 1 11.6481 -6.2915 1.6929 20 7 3.4824 -1.2135 0.1061 21 1 -0.3633 0.0001 1.0276 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8899 -0.5137 24 1 2.3792 1.5833 -1.0277 25 1 1.6085 2.0284 0.5138 26 1 3.1500 1.1384 0.5138 27 1 0.3967 -2.4347 -0.1859 28 1 1.7074 -4.5387 -0.1888 29 1 5.9954 -1.4921 0.2824 30 1 5.9623 -4.2129 1.0405 31 1 6.0964 -4.1258 -0.7322 32 1 8.0946 -2.6748 -0.5105 33 1 7.9610 -2.7615 1.2623 34 1 11.5273 -3.4030 0.6086 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308933982.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:05 Heat of formation + Delta-G solvation = 60.788806 kcal Electronic energy + Delta-G solvation = -15907.754179 eV Core-core repulsion = 13262.084629 eV Total energy + Delta-G solvation = -2645.669550 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.52299 -37.28813 -35.45025 -33.14246 -32.58362 -30.71206 -29.06419 -27.93885 -25.84809 -24.55020 -22.93396 -21.58917 -20.54813 -17.84034 -17.29293 -16.37361 -15.65411 -15.50787 -14.89757 -14.55903 -14.46684 -14.44113 -13.64364 -13.38535 -13.29110 -12.75393 -12.38921 -12.22058 -12.11778 -11.17338 -11.14375 -10.85331 -10.57231 -10.55116 -10.36394 -9.79300 -9.55915 -9.23594 -8.68103 -8.41080 -8.08595 -7.43061 -6.04946 -4.07520 1.66686 1.81786 2.76861 3.31300 3.38489 3.43279 3.62953 4.39051 4.45103 4.63660 4.83981 5.00911 5.09694 5.29785 5.32134 5.34832 5.41499 5.52104 5.62120 5.81197 5.88033 6.34678 6.45959 6.46738 6.67683 6.84221 7.22709 7.46562 7.62854 7.69161 7.69549 7.94775 8.10415 8.33448 8.93134 8.99710 9.56893 11.06886 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.054835 B = 0.004220 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.495696 B = 6633.714302 C = 7112.000704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.613 5.613 3 C 0.098 3.902 4 C 0.471 3.529 5 C -0.367 4.367 6 C 0.215 3.785 7 N -0.600 5.600 8 C 0.602 3.398 9 N -0.687 5.687 10 C 0.140 3.860 11 C 0.010 3.990 12 C -0.518 4.518 13 H 0.061 0.939 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.284 1.284 20 N -0.632 5.632 21 H 0.051 0.949 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.132 0.868 28 H 0.159 0.841 29 H 0.409 0.591 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.987 6.701 -1.200 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.328 5.328 3 C -0.045 4.045 4 C 0.226 3.774 5 C -0.398 4.398 6 C 0.050 3.950 7 N -0.327 5.327 8 C 0.244 3.756 9 N -0.321 5.321 10 C 0.018 3.982 11 C -0.027 4.027 12 C -0.557 4.557 13 H 0.079 0.921 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.210 1.210 20 N -0.366 5.366 21 H 0.070 0.930 22 H 0.088 0.912 23 H 0.092 0.908 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.150 0.850 28 H 0.176 0.824 29 H 0.246 0.754 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.753 6.746 -1.102 19.960 hybrid contribution -0.177 -0.349 -0.036 0.393 sum -18.931 6.396 -1.138 20.014 Atomic orbital electron populations 1.21684 0.78427 1.02996 1.01497 1.46121 1.05136 1.03200 1.78331 1.21577 0.97887 0.83772 1.01303 1.18073 0.87580 0.85841 0.85876 1.21685 1.01485 0.92888 1.23724 1.22544 0.88454 0.97593 0.86458 1.68046 1.10728 1.27292 1.26661 1.19112 0.87299 0.83455 0.85729 1.44794 1.00230 1.11437 1.75590 1.21692 0.92931 0.82824 1.00790 1.19351 0.87519 0.98035 0.97820 1.21075 0.91495 0.92516 1.50603 0.92114 1.25006 0.97854 0.96439 0.95091 1.69976 1.08478 1.24758 1.50103 0.86456 0.79918 0.83609 0.77567 1.19553 1.20981 1.20987 1.67246 1.07429 1.30308 1.31636 0.93021 0.91186 0.90826 0.93465 0.92024 0.89970 0.85022 0.82374 0.75433 0.92573 0.92580 0.95959 0.95961 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.72 10.30 59.85 0.62 1.34 16 2 N -0.61 -7.14 3.38 -189.50 -0.64 -7.78 16 3 C 0.10 1.00 10.51 59.84 0.63 1.63 16 4 C 0.47 7.07 7.39 -154.84 -1.14 5.92 16 5 C -0.37 -4.85 9.32 -39.10 -0.36 -5.21 16 6 C 0.22 3.12 11.28 -17.31 -0.20 2.92 16 7 N -0.60 -11.12 9.58 -14.02 -0.13 -11.26 16 8 C 0.60 11.60 8.43 -322.88 -2.72 8.88 16 9 N -0.69 -13.68 5.70 -62.32 -0.36 -14.03 16 10 C 0.14 3.09 5.58 -4.04 -0.02 3.07 16 11 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 12 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 13 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 16 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 N -0.63 -11.19 9.24 -13.16 -0.12 -11.31 16 21 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 22 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 23 H 0.07 0.50 6.04 -51.93 -0.31 0.18 16 24 H 0.05 0.47 8.14 -51.92 -0.42 0.04 16 25 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 26 H 0.08 1.01 7.33 -51.93 -0.38 0.63 16 27 H 0.13 1.30 6.15 -52.49 -0.32 0.98 16 28 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.41 7.74 8.59 -40.82 -0.35 7.39 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 291.73 15.07 4.40 4.40 Total: -1.00 -32.41 291.73 -9.60 -42.01 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -4.71 Total: 1.99 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -3.75 Total: 5.31 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -0.52 Total: -70.30 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.41 -9.60 -42.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308933982.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.802 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds